MS023001 (gene) Bitter gourd (TR) v1

Overview


Name	MS023001
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	DNA polymerase delta small subunit
Location	scaffold357: 448861 .. 457431 (-)
RNA-Seq Expression	MS023001
Synteny	MS023001

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAATCGACTCAGAGAAGAATTTCCAGCGCAAGCAGTGTTCCTATCAAATATCGGTATCTCTCACCCTCTTCTGTTTCTTAGTTCGTTTTTCATATCCCCAAAAGTTGTGGCTTTCCCGCCTTTTTTTTCGGCCCAGCTCGGCTACTTTGGAAATGCGAGGAATTTTATTTGCTTTGCTTCGTTTTCGTATTCTGAGTTAACCAAGGTTGAGGAAGGCCGGAAAAGGGACGGGAATTGGGAACCTTTAACCTTTTTTTTTTTTTTTTGTCTTAAGTGGGATTTATTAATTGTAGGATGAGCAATACAATATTCAGAACGAGACGTACAGGGGCCAGCTATTTAGTCATATTTACTTTGCTCGACTCCACTTGATGAGAACGATTCTCTTATCACTTGTCTCTAAGTGGAAACCTCATTCACCTGGTATTCGTTTTCCCCCTTTCAATTTGTATGTCATAAGCGAGCGTCTGCTCTTTTTTCTTTCTATTGTAAGTTTCTGTTATGTTCGTTTTTTCCTTTATTTTGTTATCCCAAGAACATTTCCTGTAAATTGTGGTGAGCTGTAGTTTGATTTAGCTATTTGATGCCATGAGAATTCATGATGGAAGTAGATTTTGTTGCGCGATGAGTGGGTACATAATAATTCCTGGTTTTGTGGTCCTTCAATCTGTTTTGGTCCTTTTTGGCGACTTTTGGCATCTTAACACATTCAAAAGGTTAGTGTTTTTATTGGAGTGGTTGAATTCAATTTAGGGTGGATTTAATTAATCCTTACTTTGAATTGCTTTTTAGTTATTCGTCATACATTGTAAGTTGTGACTGTTTAAGCATTGTACTTTAAATCACAATTCAAGGTTGAAGCAATTTCAAGAGGAATAGGTTTTATGGAGTAGTTAAAAAATTGTCTTCAACACAATGTCTTGCAGTTTGTACTATAATAGAATTGGAGGAAGGCAAGGAATGCATCATTATAGGAACCGTCTACAAGCATATGAAACTTAAACCTACCATTCTGGATGAGTATTCAAAGGAGGTAATATACTTCAAAGTTCAAACAAATATGTGAACTACCCTCTTTACGGCTCTCTTATGGTTTTGGTGTTATGGGATTGGATTGAGACACTTAAATGGAATGTACAGAGATCTGCCACCCCACTTGTTAAGCCTCATAACTTTATGCACCCAGATGATCAACTAGTTTTGGAAGACGAAGGTGGGAGAGTCAAGCTTTCTGGGGCCGTGCTACCTTCTGTATATGTTACAGGTCCGTTCACACAGCCTCAAGGAATTGCATAAAATTATGACAAATTTTTAAAGCATGTTGATACATGTTGTACCTATTCATCCTTGAACTTACTTCTCTTTTAACTTAGTATGAGTTGATCCACGTTGTATTTGTTGTTGCAACAAATGTATTGTTTGTCGTCAGATATCGTGCATGCAAATTGTAACTCGAGCAGCTATTATTATTTGTTTAAAATCATATTCTGCTGTATGGAAAATTAACTCTTATATTTAAGGAATTGCATAAAGTTATCAATTTTTTTGAGCATGTTGATGTATTTTCTAATACGCGTGCCAGGGATTGTTATTTGTTGCTTCAACAAATGTATTGTTTGTCTTCACATGTTGTGCATGCAAATTATAACTCGAACAACTATGATTATTTGTTTAAAAGCATGTTCTGCTGTATGGAAAATTAACTTTTTTTTTCTTATAAGAAACATGTGTATATATTACTCACAAAAAAGAGGTACAGCACAAAGGGCAGGGGGCAGAGGAAGACCCAAAAATTAACTGTTTTATTCAAGGAATTGCATAAAGTTATCAATTTTTTGAGTATGTTGATGTATTTTCTAATACGTGTGCCAGGGATTGTTGTTGCATTGCATGGAAAGGAAACTTGCGTCGGTGACTTTTTGGTTTTGGACATCCTAGAAGCTGGCTTGCCACCGCAGATAGAGCTGCCACTCATATCAAGTAATATGTGATTAACCTCCCGCTTCCTTATTTACTGTCTCCATCTTTTTAAATTTGTCCAAGAGTATTTTTTTTGGGGATAAGAAACAGACTTTTCATTAAAACAGGAACAACAAAAAACAGCCCAAGGACAAGGGACAAGGTATCCCTTTCCAAAATAACACTAATAGAGAAGAGTTCTCCAATCTCGAGTGATTTGAGAGAGGCTGTAATTACAAAAGAATTCCTGTTCCTATAACACCACCATAATGCCATAATATGAACACCGTCACAAAAAGAATCAAAAGAAATCGCCTTGTCCTCAAAGGATCGCATATTACTTTCTAGCCACAACTGCCATAGGAAGGATCTGGAGGCACAGTCCCACAACTCTTCACAATTGCCTTGAGCATAAATTTGTCCAAGAGTATTGAATTATAATGAAGTGAGAGAGAGGGTTACTTGTGTATTTCTGTTATGCTTTAATGTAACCAGTTGCTGCCAGATTAATTTTTTGTTTGTTTAAAGTAGTTGAGGGTTCATTATTGTGTTATATATTAGTTTATGGGTAGAGCTTATAAGAGAATGTCAGCATTTTGGAGCCTTGGGGTGTATAGATAAGAGTGATGTTTGTCTGATCGATATTTTTCTACTATCAATTGCAACATATTTTGTGCGGTTGTGGTGGATAGAGAAATAGCCATGGGCCATAGCTCTGAATTCACTTCTGCACTACTTCTTGAGACTACTAGCTGTTTCTCTGAATTCACTTTTGTATTGCTCCTCGAGACCATAGGCTATGCTATTTCTTACCGTGAAGATTATGAGGGCTATTTCTTGGGTTCACTTCATGGTAACCTGAAGGTTATTAAACATTTATGGGGAAAGTTTCTGGCAAACTAGGTAAATGGTATAGTTACCTGTTGTTAAAAGGGGGTAGGATTATAGGCACAAAAAATTCTTTTGTTAAAGGGGGAAGGATTATAGGCACATCTATCGATATGTTTTGTAATAGTGTTCAGTTACACTCTTCTTGGTGGTGCTATAGCCACAAATTTTTTTTTTTCTAATTACGGCCTCTCTATGATTTTGCAAGATTGGAGATCAATTCTTGTCTAGTTTTTGGGAGGGGGNATTATTCTTACTAGGCTGTTCCTCCCTAACTTACCTCCCTAATTATTTCATGTTAGTGTTCAAGATTCTTATCAAGGTTGCAATAACCATCCATAAGATTTTAGAGATTTTCTTCGCCAAAGGGCCTAAGATAAATAATGGTTAACGAGGGAGTAACTGTATCCTCAGAAGAATACGACCCCCCAAGTGATTATGACACTTAATGAGGGGGAGTAAGATGCTCTATCGTATAACGTTTTTAATAATAAAAAGTGGGAAGAGCTTTCCCATCTTTCTTCTGGCCGCATGGAAAATTGGCTTTTGGAAGGAGATTTTAACTCCATCCTTTGGTCCAAGAAAAAATCAAATTACAGAAGGCCCTCCAGAAACATATCCCTATTTAACGACTTTATTGAACATGCTGGCTTCCAAGAAATCCCTCTTTCAAATGGTCTTTGTACTTGGCCTGACTTTAGAGACACTCCTTCCCTCACACTGATCGACCAATTTTTGGCAATAAAGGATTTCCTCAAAAAGTTTCATAATCCTATTGTTAAAACGTTAGACTATCCCACTTCTTACCATTTCTATCTCCACCTTTCTTTTGGCTTAAACAAATGGGGTCCCACGCCTTTTCGCTTTGAGAATATGTGGCTGCAGCACCGGTCTTTTCCCTATTTGGTGGAGTATTGGTGGACAAACACACCATTGAGAGGCTGGCCGGGTCACGGCTTCATCCAAAAGTTTGGTTTAAAGATTGTGATAAAAGCTTGGAGCAAGACTACCAGCAACATTGTACAACAAAAGAATCAGCTCAGCTAGAACTCTCTATTTTTGATGATTTGGAGGAATCATGCAATCTTCAACCAGTTCAAAATGCTCGTAGGAAATCTATTAAAACACAGCTACTTTCTGTAGCAGAAAAGGAGGAGATTATGTGGAGACAACGGTGTAATTCCAGATGGCTTAACAAAGGGGACCACAACACTTCCTTTTTCCACCGAATTATGGCAGCCAAAAGAAGAAGAAGCACTATTACAGAGGTTATTTCCGAATCTGGTAGGAGCCTTTTGAATGAAACTGAAATTGAAGGAGGATTTCTTTCCTTTTCCGACAGATTTTACACCAAGAAGATTGGCAATACATTCCTCCCTCACCCAATTGACTGGAGCCCAATCTCCTCTCAACAGAGTACAAATATTGAAAGGCCCTTCATGGAGGAAGAAGTTTGGAAGGCGGTCAAAGATTTAGGCACAAACAAAACCTTGGGACTCAATGGCTTCAGTGTTGAATTCTACAAAAAGTTTTGGAACACCATCAAACCAAACATTATAAGGGTGTTCCAGGACTTTTTCAAGAATGGTATCATAAACTGAAGCCTTAATGAGACTTGTCTCATACCAAAGAAAGTGGATGCCCCAAAAATTGGGGATTTTCGTCCGATCAATCTCATATCATGTATGTACAAAATTATTGCCAGAGTCCTCTCGGAAAGACTCAAAGCTCTGTTGCCTCTAACAATCACAGAATTCGAATATGCTTTTGTTGCATATAAACAAATCCTTGATGCATGCCTAATAGCAAATTAGCTCATTGATGATTGGAATAGAAAGAAGAGAAAAGGTGTGGTTATCAAGACATTGAAAAAGCTTTTGACAAAGTCGATTGGGACTTTCTAGATGAGATTCTTGCATCAAAGGGCTTTGGTCCTATTTGGAGAAAATGGATTACGGTTGCATTTCTCGACAAACTTCTCTGTGATCATCAATGGTCGGCCTTGGATTACCCTTCCTCTTCGTTATAGTGGTAGATGTTTTCAGCAGATTGCTCTCCCATGCAGCAAGCAGGAACTTTATTAAAGGCTTTGATGTTGGTAATAACTCCATAGATATTCATCATCTTCAATTTGCACATGACACCATTCTATTCTCCACCTTCGAAGATCGCTCTCTTACTAATATGTTCAACCTAGTTCGTCTCTTTGAAGAAGCATCGGTGTTGAATATCAATCATCAGAAATCAGAAATATGGGGATTAATCTAGAAGACCAAGAGCTGGAACTTTTTTAACTACGAAATTTGTATGCAAAAGAGGTTCTTGGCCAAATTCCTATCTTGGTTTGCCTCTCAATCAAAAGCATGGATCCCTCTCTTTTCGGGATCCACTGATTGAGAAAGTAAAGAAACGCCTACACTCATGGAAAAATTCCTATATCTCCAAAGGTGGGCGACGCACCCTCATACAAGCTACCCTAAGTAACCTCCCCACTTTTTATATGTCCTTATTTTCCATGCCAACAAAAGTTGCAGCATCCCTTGACAGCACCATCAAAACTTTGGAAAGGAAATAACGAAAAGAAAAGCTCACATTTAGTGAAGTGGGAGACTGTCGTTCGGCCTTTGGAGGAAGGAGGCCTTGGTTTTTACAATGTGAAACAGAAAAATAGAGTGCTGCTTTCAAAGTGGTTTGGAGATATATGAATTAGATGAATGCCCTTTGGAGGAGAGTATTATGCTAAATATGGGAGATCCCCGAGGCACAACAGACTGGGTTTTTCATCCTTAGCAAGGCCCTTGGAAAGCCATTCTAAGACAACAGGACTTCGTTTTTGACAGACTATCTTACAAGATTGATAATGGTTGCAACATCTCCTTTTGGAAGGAACCGTGGCTGAATGGGGACCTCTTATACGACAAATATCCTTTGCTCTGTGTTGTCTTCAGCAAAAGAGGCTGTGGTTAACGAGCTTTGGAATGAAGATCAGGGCAGCTGGAATTTGAAGTTTAGAAGGAACTTTAAACAGGAAAGAATTGAGGAGTGAGCAGTCTTTTCACAACATCTCTCTTCTTTCACATTCATACATGTTGCAGATGTTTTCCTTTGGAACCTTGAACTAGGAGGTCACTTCACCACAAAGTCCCTCATGAAAGACCTTTGTCAACGGCACACATCCCCGCCAACCAGCCTATATGAAGTTGTATGGAAGGATTCTCATCCCAAAAAGATAAAACTCTTAATTTGGAAGTTGAGCCATAAAACAATCAACACAAATGATAAGTTACAATGGAAATTCCCCGATCTATCTGTCTCTCCATAATGGTGTTCGATTTGCAAGGCTGATTTAGAATCCCCAAAAAAAAAAAAAGAGCACCTTTTTGTCTCTTGTGACTATGCTGCACGTTTTTGGGTCTTTGTACTCTCGAATTTCGACTGGTATATTGCCCTTCCAATCAACCCATTTCTTTTGATCGAGGCTTCTCTTGGGGGATACCCCTTTAAAAAGGAAAGAAAAAGCTTCTTTGGATGTCATCAGAGCCTTCTTTTGGATAACTTAGAGACAGAAGAATCAGTGCATTTTTAATGGAAAAGAACCCTCCTTTGATAAGTTTTTAGAAGCCATTATATTTTGGTTGTTTCTTGGTGTAAATGTCCCCCTTTTTTCACAACTATAGCATTTCTTCTCTCATGTTCAATGGAAAAGCTTTCTGTAATCCCTTTTATTGGCAACTTTTGTAATTTCATATCATCCATGAAATTATTTCTTTCTCTAAAAAAAGAACAAATTTCGCAGGAGAAGATAAGTACGTGGTTTTTGTGTCAGGCCTAAGTATTGGGAGCAGCATCTCTAATCCTCTTCAGTTTCAGCTCCTTGTTGATCATATAACAGGACATTTAGGGGATGAGAAGGTTGGTTTCATCTTTATTTCTCTCTATAGATATTTATCATAATTTGCTAACTTCTTAGAACCATAAACTGAACAGGAACAAGGGATTGCAGCTCAAATAGTTCATGTTGTCATCTGTGGGAATTCTGTTGAAATTCCTTCTGCAGTTCTAAATGGTCAGGTCTGTTTCAATCTGTTAAAGATTTTGCTGAGATCAGTTTAATTCCTTCATCGAGTGTAGTATCTTTTTTGCTATTACTGATACTTATGAGTGTAAAAGAATTGAAAGGCTGATCTTTTTGAAATCTTAGAAGAGCCTTGAATGGAACAACTCCATTTATGGTTGTCCCAATTATAACTTAATATTATTTTTTTTAAACAAATTAGAACTTACTATGGTTCTCATTTAACAGTGCTATTTAATTGTTTCTGTGGAAGAAATTGGCTACAAGATGCCGGTACATATGTTTTGGGACAACTAACACCAACGTGACCATGAAACATATGTGTGTATCTGATGTTTTCTTAGGAGTATTGTTAAGGGCAGTCTATGCTAAAATTAAATCACACAATTTTCTACTTTCGAGAAGAAAACCACAAAAATTAACGTGAAGTTTGATAGATAAGGATTGGGAAAATTAGGATTTTCCAGTATTCCATTATTTTCTCTACACACTCTAGTAATATCAGTGATGTTAAGCTTTTGGCTGATGCATACTGTATTCTCTGCAGCATTTATCTACGAAGGATCGAACGAAGCTGATAGAACCTCTTAAAGAGCTAGATATCCTATTGAATCAGGTTCTTATCCAATTGATTCTCAGTTCAACTTTTTATCAAATTTATTTCCCTTTGTCCTCAAATCCTGTCACCTGATTGTAAATCTGCTGTCCTTTTCATTAGCTTGCTGCAGGCGTACCTGTTGACATCATGCCAGGTTCCAGTGACCCAGCCACCTTTTCCTTGCCCCAGCAGGTATTTCTGTTTTTATATTTTTTTTGGTTCATATCAGTTTGGTTTGTCAATAATGTCCTTTTCTTTGCAGCCTTTACACAATTGCCTTTTTCCTGGATCGTCAGCTTACAACACTCTTAGGGCTTGCTCTAACCCTCATTGCTTTGAGCTCGATAATTTCAGGTAACTTGAAAATGTTGGCTCGATAGTGTAAGTGTGAACTTGAGTCCCCCACACTTCAATCGGCGGTTTTTTTGTTTTAGGTTTCTTGGAACATCGGGTCAGAACATAGATGATCTTGAGAAGTACTCAGAGGCTAAAGATAAGCTTGAATTTATGGAGAGGACACTGAGATGGAGGCATCTGGCACCAACTGCTCCAAATACTCTTGGTACATTTCCCATTTTTATTTTTGATTTTCCTTGTTTCAAATTTTCAGTTGGTGGATAGGCCACTTGAAACAATCTCTTCTTGAATAGCCATTCCACCATTTAGCTGCACAGCTTAAATTGCAGACAAGTTTATCAAAGTTTTGCAATAATATACAACTTTACCAAATTAGTATTTATGTTATTTGAATCTTGCAGGGTGTTATCCTTTCACGGACCGAGATCCTTTCCTGATTGAGAGCTGTCCTCATGTTTATTTTGTTGGCAATCAGGACAAGTTCGATACTCGCTTAATGAAGGGTATTCTTTTTTTTCTTTAAAACTCCTATATTGACAAGTATAATTTCTGATTTGCTTCTCCTAAAGACTAAATAAATGAGGTAATATATTGTCATATATATATATTTTTAATCCAGGACCTGAAGGGCAGATGGTAAGACTCATTTCGATTCCAAGATTTTGTGAGAAGGGAACTGCCGTAATGGTA

mRNA sequence

ATGGGAATCGACTCAGAGAAGAATTTCCAGCGCAAGCAGTGTTCCTATCAAATATCGGATGAGCAATACAATATTCAGAACGAGACGTACAGGGGCCAGCTATTTAGTCATATTTACTTTGCTCGACTCCACTTGATGAGAACGATTCTCTTATCACTTGTCTCTAAGTGGAAACCTCATTCACCTGTTTGTACTATAATAGAATTGGAGGAAGGCAAGGAATGCATCATTATAGGAACCGTCTACAAGCATATGAAACTTAAACCTACCATTCTGGATGAGTATTCAAAGGAGAGATCTGCCACCCCACTTGTTAAGCCTCATAACTTTATGCACCCAGATGATCAACTAGTTTTGGAAGACGAAGGTGGGAGAGTCAAGCTTTCTGGGGCCGTGCTACCTTCTGTATATGTTACAGGGATTGTTGTTGCATTGCATGGAAAGGAAACTTGCGTCGGTGACTTTTTGGTTTTGGACATCCTAGAAGCTGGCTTGCCACCGCAGATAGAGCTGCCACTCATATCAAGAGAAGATAAGTACGTGGTTTTTGTGTCAGGCCTAAGTATTGGGAGCAGCATCTCTAATCCTCTTCAGTTTCAGCTCCTTGTTGATCATATAACAGGACATTTAGGGGATGAGAAGGAACAAGGGATTGCAGCTCAAATAGTTCATGTTGTCATCTGTGGGAATTCTGTTGAAATTCCTTCTGCAGTTCTAAATGGTCAGCATTTATCTACGAAGGATCGAACGAAGCTGATAGAACCTCTTAAAGAGCTAGATATCCTATTGAATCAGCTTGCTGCAGGCGTACCTGTTGACATCATGCCAGGTTCCAGTGACCCAGCCACCTTTTCCTTGCCCCAGCAGCCTTTACACAATTGCCTTTTTCCTGGATCGTCAGCTTACAACACTCTTAGGGCTTGCTCTAACCCTCATTGCTTTGAGCTCGATAATTTCAGTCCCCCACACTTCAATCGGCGGTTTTTTTGTTTTAGGTTTCTTGGAACATCGGGTCAGAACATAGATGATCTTGAGAAGTACTCAGAGGCTAAAGATAAGCTTGAATTTATGGAGAGGACACTGAGATGGAGGCATCTGGCACCAACTGCTCCAAATACTCTTGGGTGTTATCCTTTCACGGACCGAGATCCTTTCCTGATTGAGAGCTGTCCTCATGTTTATTTTGTTGGCAATCAGGACAAGTTCGATACTCGCTTAATGAAGGGACCTGAAGGGCAGATGGTAAGACTCATTTCGATTCCAAGATTTTGTGAGAAGGGAACTGCCGTAATGGTA

Coding sequence (CDS)

ATGGGAATCGACTCAGAGAAGAATTTCCAGCGCAAGCAGTGTTCCTATCAAATATCGGATGAGCAATACAATATTCAGAACGAGACGTACAGGGGCCAGCTATTTAGTCATATTTACTTTGCTCGACTCCACTTGATGAGAACGATTCTCTTATCACTTGTCTCTAAGTGGAAACCTCATTCACCTGTTTGTACTATAATAGAATTGGAGGAAGGCAAGGAATGCATCATTATAGGAACCGTCTACAAGCATATGAAACTTAAACCTACCATTCTGGATGAGTATTCAAAGGAGAGATCTGCCACCCCACTTGTTAAGCCTCATAACTTTATGCACCCAGATGATCAACTAGTTTTGGAAGACGAAGGTGGGAGAGTCAAGCTTTCTGGGGCCGTGCTACCTTCTGTATATGTTACAGGGATTGTTGTTGCATTGCATGGAAAGGAAACTTGCGTCGGTGACTTTTTGGTTTTGGACATCCTAGAAGCTGGCTTGCCACCGCAGATAGAGCTGCCACTCATATCAAGAGAAGATAAGTACGTGGTTTTTGTGTCAGGCCTAAGTATTGGGAGCAGCATCTCTAATCCTCTTCAGTTTCAGCTCCTTGTTGATCATATAACAGGACATTTAGGGGATGAGAAGGAACAAGGGATTGCAGCTCAAATAGTTCATGTTGTCATCTGTGGGAATTCTGTTGAAATTCCTTCTGCAGTTCTAAATGGTCAGCATTTATCTACGAAGGATCGAACGAAGCTGATAGAACCTCTTAAAGAGCTAGATATCCTATTGAATCAGCTTGCTGCAGGCGTACCTGTTGACATCATGCCAGGTTCCAGTGACCCAGCCACCTTTTCCTTGCCCCAGCAGCCTTTACACAATTGCCTTTTTCCTGGATCGTCAGCTTACAACACTCTTAGGGCTTGCTCTAACCCTCATTGCTTTGAGCTCGATAATTTCAGTCCCCCACACTTCAATCGGCGGTTTTTTTGTTTTAGGTTTCTTGGAACATCGGGTCAGAACATAGATGATCTTGAGAAGTACTCAGAGGCTAAAGATAAGCTTGAATTTATGGAGAGGACACTGAGATGGAGGCATCTGGCACCAACTGCTCCAAATACTCTTGGGTGTTATCCTTTCACGGACCGAGATCCTTTCCTGATTGAGAGCTGTCCTCATGTTTATTTTGTTGGCAATCAGGACAAGTTCGATACTCGCTTAATGAAGGGACCTGAAGGGCAGATGGTAAGACTCATTTCGATTCCAAGATTTTGTGAGAAGGGAACTGCCGTAATGGTA

Protein sequence

MGIDSEKNFQRKQCSYQISDEQYNIQNETYRGQLFSHIYFARLHLMRTILLSLVSKWKPHSPVCTIIELEEGKECIIIGTVYKHMKLKPTILDEYSKERSATPLVKPHNFMHPDDQLVLEDEGGRVKLSGAVLPSVYVTGIVVALHGKETCVGDFLVLDILEAGLPPQIELPLISREDKYVVFVSGLSIGSSISNPLQFQLLVDHITGHLGDEKEQGIAAQIVHVVICGNSVEIPSAVLNGQHLSTKDRTKLIEPLKELDILLNQLAAGVPVDIMPGSSDPATFSLPQQPLHNCLFPGSSAYNTLRACSNPHCFELDNFSPPHFNRRFFCFRFLGTSGQNIDDLEKYSEAKDKLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLIESCPHVYFVGNQDKFDTRLMKGPEGQMVRLISIPRFCEKGTAVMV

Homology

[Close]

BLAST of MS023001 vs. NCBI nr
Match: XP_022158343.1 (DNA polymerase delta small subunit [Momordica charantia])

HSP 1 Score: 843.6 bits (2178), Expect = 7.7e-241
Identity = 415/432 (96.06%), Postives = 419/432 (96.99%), Query Frame = 0


Query: 1   MGIDSEKNFQRKQCSYQISDEQYNIQNETYRGQLFSHIYFARLHLMRTILLSLVSKWKPH 60
           MGIDSEKNFQRKQCSYQISDEQYNIQNETYRGQLFSHIYFARLHLMRTILLSLVSKWKPH
Sbjct: 1   MGIDSEKNFQRKQCSYQISDEQYNIQNETYRGQLFSHIYFARLHLMRTILLSLVSKWKPH 60

Query: 61  SPVCTIIELEEGKECIIIGTVYKHMKLKPTILDEYSKERSATPLVKPHNFMHPDDQLVLE 120
           SPVCTIIELEEGKECIIIGTVYKHMKLKPTILDEYSKERSATPLVKPHNFMHPDDQLVLE
Sbjct: 61  SPVCTIIELEEGKECIIIGTVYKHMKLKPTILDEYSKERSATPLVKPHNFMHPDDQLVLE 120

Query: 121 DEGGRVKLSGAVLPSVYVTGIVVALHGKETCVGDFLVLDILEAGLPPQIELPLISREDKY 180
           DEGGRVKLSGAVLPSVYVTGIVVALHGKETCVGDFLVLDILEAGLPPQIE PLISREDKY
Sbjct: 121 DEGGRVKLSGAVLPSVYVTGIVVALHGKETCVGDFLVLDILEAGLPPQIEQPLISREDKY 180

Query: 181 VVFVSGLSIGSSISNPLQFQLLVDHITGHLGDEKEQGIAAQIVHVVICGNSVEIPSAVLN 240
           VVFVSGLSIGSSISNPLQFQLLVDHITGHLGDEKEQGIAAQIVHVVICGNSVEIPSAVLN
Sbjct: 181 VVFVSGLSIGSSISNPLQFQLLVDHITGHLGDEKEQGIAAQIVHVVICGNSVEIPSAVLN 240

Query: 241 GQHLSTKDRTKLIEPLKELDILLNQLAAGVPVDIMPGSSDPATFSLPQQPLHNCLFPGSS 300
           GQ+LSTKD+TKLIEPLKELDILLNQLAAGVPVDIMPGSSDPATFSLPQQPLHNCLFPGSS
Sbjct: 241 GQYLSTKDQTKLIEPLKELDILLNQLAAGVPVDIMPGSSDPATFSLPQQPLHNCLFPGSS 300

Query: 301 AYNTLRACSNPHCFELDNFSPPHFNRRFFCFRFLGTSGQNIDDLEKYSEAKDKLEFMERT 360
           AYNTLRACSNPHCFELDN            FRFLGTSGQNIDDLEKYSEAKDKLEFMERT
Sbjct: 301 AYNTLRACSNPHCFELDN------------FRFLGTSGQNIDDLEKYSEAKDKLEFMERT 360

Query: 361 LRWRHLAPTAPNTLGCYPFTDRDPFLIESCPHVYFVGNQDKFDTRLMKGPEGQMVRLISI 420
           LRWRHLAPTAPNTLGCYPFTDRDPFLIESCPHVYFVGNQDKFDTRL+KGPEGQMVRLISI
Sbjct: 361 LRWRHLAPTAPNTLGCYPFTDRDPFLIESCPHVYFVGNQDKFDTRLIKGPEGQMVRLISI 420

Query: 421 PRFCEKGTAVMV 433
           PRFCEKGTAVM+
Sbjct: 421 PRFCEKGTAVML 420

[Close]

BLAST of MS023001 vs. NCBI nr
Match: XP_038906226.1 (DNA polymerase delta small subunit isoform X3 [Benincasa hispida])

HSP 1 Score: 763.5 bits (1970), Expect = 1.0e-216
Identity = 370/433 (85.45%), Postives = 392/433 (90.53%), Query Frame = 0


Query: 1   MGIDSEKNFQRKQCSYQISDEQYNIQNETYRGQLFSHIYFARLHLMRTILLSLVSKWKPH 60
           M IDS KN QRKQC+Y+I DEQY IQ ETY+GQ +SHIYFARLHLMRTIL SLVSKWKPH
Sbjct: 1   MEIDSLKNLQRKQCTYEILDEQYKIQKETYKGQQYSHIYFARLHLMRTILHSLVSKWKPH 60

Query: 61  SPVCTIIELEEGKECIIIGTVYKHMKLKPTILDEYSKERSATPLVKPHNFMHPDDQLVLE 120
            PVCT++ LEEGKEC+I+GTVYKHMKLKPTILDEYSKERSA PLV+PHNFMHPDD LVLE
Sbjct: 61  LPVCTVLGLEEGKECVIVGTVYKHMKLKPTILDEYSKERSANPLVRPHNFMHPDDHLVLE 120

Query: 121 DEGGRVKLSGAV-LPSVYVTGIVVALHGKETCVGDFLVLDILEAGLPPQIELPLISREDK 180
           DE GRVKLSGAV LPSVYVTGIV+AL GKETCVGDFLVLDILEAGLPPQIE PLIS EDK
Sbjct: 121 DESGRVKLSGAVLLPSVYVTGIVLALRGKETCVGDFLVLDILEAGLPPQIERPLISSEDK 180

Query: 181 YVVFVSGLSIGSSISNPLQFQLLVDHITGHLGDEKEQGIAAQIVHVVICGNSVEIPSAVL 240
           YV+FVSG+SIGSSISNPLQFQLLVDHITGHLGDEKEQGIAAQIVHVVICGNSVEIP  +L
Sbjct: 181 YVIFVSGISIGSSISNPLQFQLLVDHITGHLGDEKEQGIAAQIVHVVICGNSVEIPRGIL 240

Query: 241 NGQHLSTKDRTKLIEPLKELDILLNQLAAGVPVDIMPGSSDPATFSLPQQPLHNCLFPGS 300
           NGQHLS KD+TKL EPLKELDILLNQ+A G+PVDIMPGSSDPA FSLPQQPLH CL PGS
Sbjct: 241 NGQHLSAKDQTKLTEPLKELDILLNQIAVGLPVDIMPGSSDPANFSLPQQPLHRCLSPGS 300

Query: 301 SAYNTLRACSNPHCFELDNFSPPHFNRRFFCFRFLGTSGQNIDDLEKYSEAKDKLEFMER 360
           SAYNT R+C+NPHCFELDN            FRFLGTSGQNIDDLEKYSEAKDKLEFMER
Sbjct: 301 SAYNTFRSCTNPHCFELDN------------FRFLGTSGQNIDDLEKYSEAKDKLEFMER 360

Query: 361 TLRWRHLAPTAPNTLGCYPFTDRDPFLIESCPHVYFVGNQDKFDTRLMKGPEGQMVRLIS 420
           TLRWRHLAPTAPNTLGCYPFTDRDPFLIESCPHVYF+GNQDKFDTRL+KG EGQMVRLI+
Sbjct: 361 TLRWRHLAPTAPNTLGCYPFTDRDPFLIESCPHVYFIGNQDKFDTRLIKGAEGQMVRLIA 420

Query: 421 IPRFCEKGTAVMV 433
           IPRFCE G AVM+
Sbjct: 421 IPRFCENGVAVML 421

[Close]

BLAST of MS023001 vs. NCBI nr
Match: KAA0043732.1 (DNA polymerase delta small subunit [Cucumis melo var. makuwa])

HSP 1 Score: 755.0 bits (1948), Expect = 3.6e-214
Identity = 369/433 (85.22%), Postives = 388/433 (89.61%), Query Frame = 0


Query: 1   MGIDSEKNFQRKQCSYQISDEQYNIQNETYRGQLFSHIYFARLHLMRTILLSLVSKWKPH 60
           M IDS KN  RKQC+Y+ISDEQY IQ ETY+GQ +SHIYFARLHLMRTIL SLVS WKPH
Sbjct: 3   MEIDSPKNVHRKQCNYEISDEQYKIQKETYKGQQYSHIYFARLHLMRTILHSLVSNWKPH 62

Query: 61  SPVCTIIELEEGKECIIIGTVYKHMKLKPTILDEYSKERSATPLVKPHNFMHPDDQLVLE 120
            PV T++ LEEGKEC+I+GTVYKHMKLKPTILDEYSKERSA PLVKPHNFMHPDD LVLE
Sbjct: 63  LPVSTVLGLEEGKECVIVGTVYKHMKLKPTILDEYSKERSAIPLVKPHNFMHPDDHLVLE 122

Query: 121 DEGGRVKLSGAV-LPSVYVTGIVVALHGKETCVGDFLVLDILEAGLPPQIELPLISREDK 180
           DE GRVKLSG V LPSVYVTGIV+ALHGKET VGDFLVLDILEA LPPQIE PLIS EDK
Sbjct: 123 DESGRVKLSGDVLLPSVYVTGIVLALHGKETSVGDFLVLDILEADLPPQIERPLISSEDK 182

Query: 181 YVVFVSGLSIGSSISNPLQFQLLVDHITGHLGDEKEQGIAAQIVHVVICGNSVEIPSAVL 240
           YV+FVSGLSIGSSISNPLQFQLLVDHITGHLGDEKEQGIAAQIVHVVICGNSVEIP  +L
Sbjct: 183 YVIFVSGLSIGSSISNPLQFQLLVDHITGHLGDEKEQGIAAQIVHVVICGNSVEIPRGIL 242

Query: 241 NGQHLSTKDRTKLIEPLKELDILLNQLAAGVPVDIMPGSSDPATFSLPQQPLHNCLFPGS 300
           NGQHLS KD+TKL EPLKELDI LNQLAAG+PVDIMPGSSDPA FSLPQQPLH CLFPGS
Sbjct: 243 NGQHLSAKDQTKLTEPLKELDIQLNQLAAGLPVDIMPGSSDPANFSLPQQPLHRCLFPGS 302

Query: 301 SAYNTLRACSNPHCFELDNFSPPHFNRRFFCFRFLGTSGQNIDDLEKYSEAKDKLEFMER 360
           SAYNT R+C+NPHCFELDN             RFLGTSGQN+DDLEKYSEAKDKLEFMER
Sbjct: 303 SAYNTFRSCTNPHCFELDN------------LRFLGTSGQNVDDLEKYSEAKDKLEFMER 362

Query: 361 TLRWRHLAPTAPNTLGCYPFTDRDPFLIESCPHVYFVGNQDKFDTRLMKGPEGQMVRLIS 420
           TLRWRHLAPTAPNTLGCYPFTDRDPFLIESCPHVYF+GNQDKFDTRL+KG EGQMVRLI+
Sbjct: 363 TLRWRHLAPTAPNTLGCYPFTDRDPFLIESCPHVYFIGNQDKFDTRLIKGAEGQMVRLIA 422

Query: 421 IPRFCEKGTAVMV 433
           IPRFCE G AVMV
Sbjct: 423 IPRFCETGIAVMV 423

[Close]

BLAST of MS023001 vs. NCBI nr
Match: XP_004136567.1 (DNA polymerase delta small subunit [Cucumis sativus] >KGN59302.1 hypothetical protein Csa_001594 [Cucumis sativus])

HSP 1 Score: 754.6 bits (1947), Expect = 4.7e-214
Identity = 368/433 (84.99%), Postives = 389/433 (89.84%), Query Frame = 0


Query: 1   MGIDSEKNFQRKQCSYQISDEQYNIQNETYRGQLFSHIYFARLHLMRTILLSLVSKWKPH 60
           M IDS  N  RKQC+Y++SDEQY IQ ETY+GQ +SHIYFARLHLMRTIL SLVS WKPH
Sbjct: 1   MEIDSLTNVHRKQCTYELSDEQYKIQKETYKGQQYSHIYFARLHLMRTILHSLVSNWKPH 60

Query: 61  SPVCTIIELEEGKECIIIGTVYKHMKLKPTILDEYSKERSATPLVKPHNFMHPDDQLVLE 120
            PV T++ LEEGKEC+I+GTVYKHMKLKPTILDEYSKERSA PLVKPHNFMHPDD LVLE
Sbjct: 61  LPVSTVLGLEEGKECVIVGTVYKHMKLKPTILDEYSKERSAIPLVKPHNFMHPDDHLVLE 120

Query: 121 DEGGRVKLSGAV-LPSVYVTGIVVALHGKETCVGDFLVLDILEAGLPPQIELPLISREDK 180
           DE GRVKLSG V LPSVYVTGIV+ALHGKET VGDFLVLDILEA LPPQIE PLIS EDK
Sbjct: 121 DESGRVKLSGDVLLPSVYVTGIVLALHGKETSVGDFLVLDILEADLPPQIERPLISSEDK 180

Query: 181 YVVFVSGLSIGSSISNPLQFQLLVDHITGHLGDEKEQGIAAQIVHVVICGNSVEIPSAVL 240
           YV+FVSGLSIGSSISNPLQFQLLVDHITGHLGDEKEQGIAAQIVHVVICGNSVEIP  +L
Sbjct: 181 YVIFVSGLSIGSSISNPLQFQLLVDHITGHLGDEKEQGIAAQIVHVVICGNSVEIPRGIL 240

Query: 241 NGQHLSTKDRTKLIEPLKELDILLNQLAAGVPVDIMPGSSDPATFSLPQQPLHNCLFPGS 300
           NGQHLS KD+TKL EPLKELDILLNQLAAG+PVDIMPGSSDPA FSLPQQPLH CLFPGS
Sbjct: 241 NGQHLSAKDQTKLTEPLKELDILLNQLAAGLPVDIMPGSSDPANFSLPQQPLHRCLFPGS 300

Query: 301 SAYNTLRACSNPHCFELDNFSPPHFNRRFFCFRFLGTSGQNIDDLEKYSEAKDKLEFMER 360
           SAYNT R+C+NPHCFELDN            FRFLGTSGQN+DDLEKYSEAKDKLEFMER
Sbjct: 301 SAYNTFRSCTNPHCFELDN------------FRFLGTSGQNVDDLEKYSEAKDKLEFMER 360

Query: 361 TLRWRHLAPTAPNTLGCYPFTDRDPFLIESCPHVYFVGNQDKFDTRLMKGPEGQMVRLIS 420
           TLRWRHLAPTAPNTLGCYPFTDRDPFLIESCPHVYF+GNQ+KFDTRLMKG EGQMVRLI+
Sbjct: 361 TLRWRHLAPTAPNTLGCYPFTDRDPFLIESCPHVYFIGNQEKFDTRLMKGAEGQMVRLIA 420

Query: 421 IPRFCEKGTAVMV 433
           IPRFCE G AVM+
Sbjct: 421 IPRFCETGIAVML 421

[Close]

BLAST of MS023001 vs. NCBI nr
Match: TYK25400.1 (DNA polymerase delta small subunit [Cucumis melo var. makuwa])

HSP 1 Score: 753.8 bits (1945), Expect = 8.0e-214
Identity = 368/432 (85.19%), Postives = 387/432 (89.58%), Query Frame = 0


Query: 1   MGIDSEKNFQRKQCSYQISDEQYNIQNETYRGQLFSHIYFARLHLMRTILLSLVSKWKPH 60
           M IDS KN  RKQC+Y+ISDEQY IQ ETY+GQ +SHIYFARLHLMRTIL SLVS WKPH
Sbjct: 3   MEIDSPKNVHRKQCNYEISDEQYKIQKETYKGQQYSHIYFARLHLMRTILHSLVSNWKPH 62

Query: 61  SPVCTIIELEEGKECIIIGTVYKHMKLKPTILDEYSKERSATPLVKPHNFMHPDDQLVLE 120
            PV T++ LEEGKEC+I+GTVYKHMKLKPTILDEYSKERSA PLVKPHNFMHPDD LVLE
Sbjct: 63  LPVSTVLGLEEGKECVIVGTVYKHMKLKPTILDEYSKERSAIPLVKPHNFMHPDDHLVLE 122

Query: 121 DEGGRVKLSGAV-LPSVYVTGIVVALHGKETCVGDFLVLDILEAGLPPQIELPLISREDK 180
           DE GRVKLSG V LPSVYVTGIV+ALHGKET VGDFLVLDILEA LPPQIE PLIS EDK
Sbjct: 123 DESGRVKLSGDVLLPSVYVTGIVLALHGKETSVGDFLVLDILEADLPPQIERPLISSEDK 182

Query: 181 YVVFVSGLSIGSSISNPLQFQLLVDHITGHLGDEKEQGIAAQIVHVVICGNSVEIPSAVL 240
           YV+FVSGLSIGSSISNPLQFQLLVDHITGHLGDEKEQGIAAQIVHVVICGNSVEIP  +L
Sbjct: 183 YVIFVSGLSIGSSISNPLQFQLLVDHITGHLGDEKEQGIAAQIVHVVICGNSVEIPRGIL 242

Query: 241 NGQHLSTKDRTKLIEPLKELDILLNQLAAGVPVDIMPGSSDPATFSLPQQPLHNCLFPGS 300
           NGQHLS KD+TKL EPLKELDI LNQLAAG+PVDIMPGSSDPA FSLPQQPLH CLFPGS
Sbjct: 243 NGQHLSAKDQTKLTEPLKELDIQLNQLAAGLPVDIMPGSSDPANFSLPQQPLHRCLFPGS 302

Query: 301 SAYNTLRACSNPHCFELDNFSPPHFNRRFFCFRFLGTSGQNIDDLEKYSEAKDKLEFMER 360
           SAYNT R+C+NPHCFELDN             RFLGTSGQN+DDLEKYSEAKDKLEFMER
Sbjct: 303 SAYNTFRSCTNPHCFELDN------------LRFLGTSGQNVDDLEKYSEAKDKLEFMER 362

Query: 361 TLRWRHLAPTAPNTLGCYPFTDRDPFLIESCPHVYFVGNQDKFDTRLMKGPEGQMVRLIS 420
           TLRWRHLAPTAPNTLGCYPFTDRDPFLIESCPHVYF+GNQDKFDTRL+KG EGQMVRLI+
Sbjct: 363 TLRWRHLAPTAPNTLGCYPFTDRDPFLIESCPHVYFIGNQDKFDTRLIKGAEGQMVRLIA 422

Query: 421 IPRFCEKGTAVM 432
           IPRFCE G AVM
Sbjct: 423 IPRFCETGIAVM 422

[Close]

BLAST of MS023001 vs. ExPASy Swiss-Prot
Match: O48520 (DNA polymerase delta small subunit OS=Arabidopsis thaliana OX=3702 GN=POLD2 PE=2 SV=2)

HSP 1 Score: 649.8 bits (1675), Expect = 2.1e-185
Identity = 309/433 (71.36%), Postives = 361/433 (83.37%), Query Frame = 0


Query: 1   MGIDSEKNFQRKQCSYQISDEQYNIQNETYRGQLFSHIYFARLHLMRTILLSLVSKWKPH 60
           M IDSEK  +RKQ  Y   DE++ IQ E YRGQ +S IYFARLHLMRT+L SL   WK H
Sbjct: 1   MEIDSEKIHERKQSDYNSLDERFEIQKEMYRGQQYSQIYFARLHLMRTLLYSLAPTWKSH 60

Query: 61  SPVCTIIELEEGKECIIIGTVYKHMKLKPTILDEYSKERSATPLVKPHNFMHPDDQLVLE 120
            PVC ++ LE+GKECII+GT++KHMKLKP +LDEYSKERS TPLVKPHNFMHPDD L+LE
Sbjct: 61  LPVCKVLGLEKGKECIIVGTLFKHMKLKPCVLDEYSKERSVTPLVKPHNFMHPDDNLILE 120

Query: 121 DEGGRVKLSGAVL-PSVYVTGIVVALHGKETCVGDFLVLDILEAGLPPQIELPLISREDK 180
           DE GRVKL+G+ L P++YVTG+VVALHGKET  G+F V D+LEAGLPPQIE P+  +EDK
Sbjct: 121 DESGRVKLAGSALSPAIYVTGVVVALHGKETNAGEFFVEDVLEAGLPPQIERPIDLQEDK 180

Query: 181 YVVFVSGLSIGSSISNPLQFQLLVDHITGHLGDEKEQGIAAQIVHVVICGNSVEIPSAVL 240
           YVV +SGL IGS  +NPLQFQLLVDHITGHLGDE+EQG+AAQIVHVVI GNS E P  ++
Sbjct: 181 YVVLLSGLCIGSKSANPLQFQLLVDHITGHLGDEEEQGLAAQIVHVVIAGNSFEFPRKLI 240

Query: 241 NGQHLSTKDRTKLIEPLKELDILLNQLAAGVPVDIMPGSSDPATFSLPQQPLHNCLFPGS 300
           NGQ+L++KD++ L EP+KELDI+L+Q+AAGV VDIMPG++DPA F+LPQQPL+ CLFPGS
Sbjct: 241 NGQNLASKDQSTLYEPIKELDIMLSQIAAGVSVDIMPGTNDPANFALPQQPLNRCLFPGS 300

Query: 301 SAYNTLRACSNPHCFELDNFSPPHFNRRFFCFRFLGTSGQNIDDLEKYSEAKDKLEFMER 360
           S YNT R+C+NPH F++DN             RFLGTSGQNIDDL KYSEAK KL+F+ER
Sbjct: 301 SPYNTFRSCTNPHSFDVDN------------IRFLGTSGQNIDDLGKYSEAKSKLDFVER 360

Query: 361 TLRWRHLAPTAPNTLGCYPFTDRDPFLIESCPHVYFVGNQDKFDTRLMKGPEGQMVRLIS 420
           TLRWRHLAPTAPNTLGCYPFTDRDPFLIE+CPHVYFVGNQDK+D RL+KG EGQ+VRLI 
Sbjct: 361 TLRWRHLAPTAPNTLGCYPFTDRDPFLIETCPHVYFVGNQDKYDNRLIKGSEGQLVRLIC 420

Query: 421 IPRFCEKGTAVMV 433
           IP+FCE G AV V
Sbjct: 421 IPKFCETGIAVAV 421

[Close]

BLAST of MS023001 vs. ExPASy Swiss-Prot
Match: Q9LRE5 (DNA polymerase delta small subunit OS=Oryza sativa subsp. japonica OX=39947 GN=POLD2 PE=2 SV=1)

HSP 1 Score: 618.6 bits (1594), Expect = 5.3e-176
Identity = 293/423 (69.27%), Postives = 347/423 (82.03%), Query Frame = 0


Query: 10  QRKQCSYQISDEQYNIQNETYRGQLFSHIYFARLHLMRTILLSLVSKWKPHSPVCTIIEL 69
           +RKQ  Y   DE+Y IQ E Y+GQ +SHIYF RLH MR +L +LV  WKPH PV T++ L
Sbjct: 2   ERKQAEYSNLDERYAIQGEKYQGQQYSHIYFTRLHHMRNLLHALVPSWKPHLPVTTVLGL 61

Query: 70  EEGKECIIIGTVYKHMKLKPTILDEYSKERSATPLVKPHNFMHPDDQLVLEDEGGRVKLS 129
           EEGK+CII+GT+YKHMKLKP+ILDEYSKERSA PLVKPHNFMHPDD L+LEDE GRV L+
Sbjct: 62  EEGKDCIIVGTLYKHMKLKPSILDEYSKERSAIPLVKPHNFMHPDDHLILEDESGRVTLA 121

Query: 130 GAVLPSVYVTGIVVALHGKETCVGDFLVLDILEAGLPPQIELPLISREDKYVVFVSGLSI 189
           GA+ P+ YVTG+V+ALHGKET  G+FLV DILEAG+PPQI LP I+ EDKYVVFVSGLSI
Sbjct: 122 GAIPPAAYVTGVVIALHGKETSAGNFLVEDILEAGIPPQITLPSIN-EDKYVVFVSGLSI 181

Query: 190 GSSISNPLQFQLLVDHITGHLGDEKEQGIAAQIVHVVICGNSVEIPSAVLNGQHLSTKDR 249
           GS   NPLQFQLL+DHITGHLGDE EQ IA+ IV VV+ GNSV I     NGQ +++KD+
Sbjct: 182 GSEKFNPLQFQLLIDHITGHLGDENEQSIASNIVRVVVAGNSVHISPRFFNGQAVASKDQ 241

Query: 250 TKLIEPLKELDILLNQLAAGVPVDIMPGSSDPATFSLPQQPLHNCLFPGSSAYNTLRACS 309
           +++ EP+KELDI+L QL A +PVD+MPGS+DPA FSLPQQPLH CLF G++ YNT  +CS
Sbjct: 242 SRIAEPIKELDIMLTQLVASLPVDMMPGSNDPANFSLPQQPLHRCLFAGAATYNTFSSCS 301

Query: 310 NPHCFELDNFSPPHFNRRFFCFRFLGTSGQNIDDLEKYSEAKDKLEFMERTLRWRHLAPT 369
           NPH FELD+             RF+GTSGQNIDDL KYS+AKDKLEF+ERTLRWRHLAPT
Sbjct: 302 NPHQFELDS------------VRFIGTSGQNIDDLYKYSDAKDKLEFVERTLRWRHLAPT 361

Query: 370 APNTLGCYPFTDRDPFLIESCPHVYFVGNQDKFDTRLMKGPEGQMVRLISIPRFCEKGTA 429
           APN+LGCYP+TD+DPFL+ESCPHVYFVGNQDK++T+L++G E Q VRLI IPRFC+ G A
Sbjct: 362 APNSLGCYPYTDKDPFLVESCPHVYFVGNQDKYETQLLQGLEKQKVRLICIPRFCDSGVA 411

Query: 430 VMV 433
           VM+
Sbjct: 422 VML 411

[Close]

BLAST of MS023001 vs. ExPASy Swiss-Prot
Match: O35654 (DNA polymerase delta subunit 2 OS=Mus musculus OX=10090 GN=Pold2 PE=1 SV=2)

HSP 1 Score: 331.3 bits (848), Expect = 1.7e-89
Identity = 177/424 (41.75%), Postives = 258/424 (60.85%), Query Frame = 0


Query: 15  SYQISDEQYNIQNETYRGQLFSHIYFARLHLMRTILLSLVSK-WKPHSPVCTIIELEEGK 74
           +Y  S + + +   ++  Q ++HIY  RL  MR  L+S   + W     V  + EL+ G+
Sbjct: 31  TYTNSSQPFRLGERSFNRQ-YAHIYATRLIQMRPFLVSRAQQHWGSRVEVKKLCELQPGE 90

Query: 75  ECIIIGTVYKHMKLKPTILDEYSKERSATPLVKPHNFMHPDDQLVLEDEGGRVKLSGAVL 134
           +C ++GT++K M L+P+IL E S+E +  P      ++HPDD+LVLEDE  R+KL G + 
Sbjct: 91  QCCVVGTLFKAMSLQPSILREISEEHNLVPQPPRSKYIHPDDELVLEDELQRIKLKGTID 150

Query: 135 PSVYVTGIVVALHGKETCVGDFLVLDILEAGLPPQIELPLISREDKYVVFVSGLSIGSSI 194
            S  VTG V+A+ G     G F V D   A L PQ  +P +   D++V+ VSGL +G   
Sbjct: 151 VSKLVTGTVLAVLGSAKDDGRFQVEDHCFADLAPQKPVPPLD-TDRFVLLVSGLGLGGGG 210

Query: 195 SNP-LQFQLLVDHITGHLGDEKEQGIAAQIVHVVICGN----SVEIPSAVLNGQHLSTKD 254
               L  QLLVD +TG LGDE EQ  AA +  V++ GN    + +   ++   ++L+ K 
Sbjct: 211 GESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHNTQSRDSINKAKYLTKKT 270

Query: 255 RTKLIEPLKELDILLNQLAAGVPVDIMPGSSDPATFSLPQQPLHNCLFPGSSAYNTLRAC 314
           +   +E +K LD +L QL+A VPVD+MPG  DP  ++LPQQPLH C+FP ++AY+TL+  
Sbjct: 271 QAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLV 330

Query: 315 SNPHCFELDNFSPPHFNRRFFCFRFLGTSGQNIDDLEKYSEAKDKLEFMERTLRWRHLAP 374
           +NP+   +D              RFLGTSGQN+ D+ +YS  +D LE +E TLR RH++P
Sbjct: 331 TNPYQATIDG------------VRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISP 390

Query: 375 TAPNTLGCYPFTDRDPFLIESCPHVYFVGNQDKFDTRLMKGPEGQMVRLISIPRFCEKGT 433
           TAP+TLGCYPF   DPF+   CPHVYF GN   F +++++GPE Q+V L+++P F    T
Sbjct: 391 TAPDTLGCYPFYKTDPFIFPECPHVYFCGNTPSFGSKIIRGPEDQVVLLVAVPDFSSTQT 440

[Close]

BLAST of MS023001 vs. ExPASy Swiss-Prot
Match: Q6AXY4 (DNA polymerase delta subunit 2 OS=Rattus norvegicus OX=10116 GN=Pold2 PE=1 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 8.4e-89
Identity = 177/424 (41.75%), Postives = 256/424 (60.38%), Query Frame = 0


Query: 15  SYQISDEQYNIQNETYRGQLFSHIYFARLHLMRTILLSLVSK-WKPHSPVCTIIELEEGK 74
           +Y  S + + +   ++  Q ++HIY  RL  MR  L+S   + W     V  + EL+ G+
Sbjct: 31  TYTNSSQPFRLGERSFNRQ-YAHIYATRLIQMRPFLVSRAQQHWGSQVEVKKLCELQPGE 90

Query: 75  ECIIIGTVYKHMKLKPTILDEYSKERSATPLVKPHNFMHPDDQLVLEDEGGRVKLSGAVL 134
           +C ++GT++K M L+P+IL E S+E +  P      ++HPDD+LVLEDE  R+KL G + 
Sbjct: 91  QCCVVGTLFKAMPLQPSILREISEEHNLIPQPPRSKYIHPDDELVLEDELQRIKLKGTID 150

Query: 135 PSVYVTGIVVALHGKETCVGDFLVLDILEAGLPPQIELPLISREDKYVVFVSGLSIGSSI 194
            S  VTG V+A+ G     G F V D   A L PQ  +P +   D++V+ VSGL +G   
Sbjct: 151 VSKLVTGTVLAVFGSVKDDGKFQVEDHCFADLAPQNPVPPLD-TDRFVLLVSGLGLGGGG 210

Query: 195 SNP-LQFQLLVDHITGHLGDEKEQGIAAQIVHVVICGN----SVEIPSAVLNGQHLSTKD 254
               L  QLLVD +TG LGDE EQ  AA +  V++ GN    + +   ++   ++L+ K 
Sbjct: 211 GESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHNTQSRDSINKAKYLTKKT 270

Query: 255 RTKLIEPLKELDILLNQLAAGVPVDIMPGSSDPATFSLPQQPLHNCLFPGSSAYNTLRAC 314
           +   +E +K LD +L QL+A VPVD+MPG  DP  ++LPQQPLH C+FP ++AY TL+  
Sbjct: 271 QAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYATLQLV 330

Query: 315 SNPHCFELDNFSPPHFNRRFFCFRFLGTSGQNIDDLEKYSEAKDKLEFMERTLRWRHLAP 374
           +NP+   +D              RFLGTSGQN+ D+ +YS  +D LE +E TLR RH++P
Sbjct: 331 TNPYQATIDG------------VRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISP 390

Query: 375 TAPNTLGCYPFTDRDPFLIESCPHVYFVGNQDKFDTRLMKGPEGQMVRLISIPRFCEKGT 433
           TAP+TLGCYPF   DPF+   CPHVYF GN   F +++++GPE Q V L+++P F    T
Sbjct: 391 TAPDTLGCYPFYKTDPFIFAECPHVYFCGNTPSFGSKVIRGPEDQAVLLVAVPDFSSTQT 440

[Close]

BLAST of MS023001 vs. ExPASy Swiss-Prot
Match: P49004 (DNA polymerase delta subunit 2 OS=Bos taurus OX=9913 GN=POLD2 PE=1 SV=2)

HSP 1 Score: 325.9 bits (834), Expect = 7.1e-88
Identity = 178/425 (41.88%), Postives = 259/425 (60.94%), Query Frame = 0


Query: 15  SYQISDEQYNIQNETYRGQLFSHIYFARLHLMRTILLSLV-SKWKPHSPVCTIIELEEGK 74
           +Y  S + + +   ++  Q ++HIY  RL  MR  L+S    +W     V  + EL+ G+
Sbjct: 31  TYTNSSQPFRLGERSFSRQ-YAHIYATRLIQMRPFLVSRAQQRWGSGVLVKKLCELQPGE 90

Query: 75  ECIIIGTVYKHMKLKPTILDEYSKERSATPLVKPHNFMHPDDQLVLEDEGGRVKLSGAVL 134
           +C ++GT++K M L+P+IL E S+E +  P      ++HPDD+L+LEDE  R+KL G + 
Sbjct: 91  KCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELILEDELQRIKLEGTID 150

Query: 135 PSVYVTGIVVALHGKETCVGDFLVLDILEAGLPPQ-IELPLISREDKYVVFVSGLSIGSS 194
            S  VTG V+A+ G     G FLV D   AGL PQ    PL +  D++V+ VSGL +G  
Sbjct: 151 VSKLVTGTVLAVLGSAGDDGKFLVEDHCFAGLAPQKPACPLDT--DRFVLLVSGLGLGGG 210

Query: 195 ISNP-LQFQLLVDHITGHLGDEKEQGIAAQIVHVVICGN----SVEIPSAVLNGQHLSTK 254
                L  QLLVD +TG LGDE EQ  AA +  V++ GN    + +   ++   ++L+ K
Sbjct: 211 GGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHNTQSRDSINKAKYLTKK 270

Query: 255 DRTKLIEPLKELDILLNQLAAGVPVDIMPGSSDPATFSLPQQPLHNCLFPGSSAYNTLRA 314
            +   +E +K LD +L QL+A VPVD+MPG  DP  ++LPQQPLH C+FP ++AY+TL+ 
Sbjct: 271 TQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQL 330

Query: 315 CSNPHCFELDNFSPPHFNRRFFCFRFLGTSGQNIDDLEKYSEAKDKLEFMERTLRWRHLA 374
            +NP+   +D              RFLGTSGQN+ D+ +YS  +D LE +E TL+ RH++
Sbjct: 331 VTNPYQATIDG------------VRFLGTSGQNVSDIFRYSSMEDHLEILEWTLQVRHIS 390

Query: 375 PTAPNTLGCYPFTDRDPFLIESCPHVYFVGNQDKFDTRLMKGPEGQMVRLISIPRFCEKG 433
           PTAP+TLGCYPF   DPF+   CPHVYF GN   F +++++GPE Q V L+++P F    
Sbjct: 391 PTAPDTLGCYPFYKTDPFIFPECPHVYFCGNTPSFGSKIIQGPEDQTVLLVAVPDFSTTQ 440

[Close]

BLAST of MS023001 vs. ExPASy TrEMBL
Match: A0A6J1DVU3 (DNA polymerase delta small subunit OS=Momordica charantia OX=3673 GN=LOC111024850 PE=3 SV=1)

HSP 1 Score: 843.6 bits (2178), Expect = 3.7e-241
Identity = 415/432 (96.06%), Postives = 419/432 (96.99%), Query Frame = 0


Query: 1   MGIDSEKNFQRKQCSYQISDEQYNIQNETYRGQLFSHIYFARLHLMRTILLSLVSKWKPH 60
           MGIDSEKNFQRKQCSYQISDEQYNIQNETYRGQLFSHIYFARLHLMRTILLSLVSKWKPH
Sbjct: 1   MGIDSEKNFQRKQCSYQISDEQYNIQNETYRGQLFSHIYFARLHLMRTILLSLVSKWKPH 60

Query: 61  SPVCTIIELEEGKECIIIGTVYKHMKLKPTILDEYSKERSATPLVKPHNFMHPDDQLVLE 120
           SPVCTIIELEEGKECIIIGTVYKHMKLKPTILDEYSKERSATPLVKPHNFMHPDDQLVLE
Sbjct: 61  SPVCTIIELEEGKECIIIGTVYKHMKLKPTILDEYSKERSATPLVKPHNFMHPDDQLVLE 120

Query: 121 DEGGRVKLSGAVLPSVYVTGIVVALHGKETCVGDFLVLDILEAGLPPQIELPLISREDKY 180
           DEGGRVKLSGAVLPSVYVTGIVVALHGKETCVGDFLVLDILEAGLPPQIE PLISREDKY
Sbjct: 121 DEGGRVKLSGAVLPSVYVTGIVVALHGKETCVGDFLVLDILEAGLPPQIEQPLISREDKY 180

Query: 181 VVFVSGLSIGSSISNPLQFQLLVDHITGHLGDEKEQGIAAQIVHVVICGNSVEIPSAVLN 240
           VVFVSGLSIGSSISNPLQFQLLVDHITGHLGDEKEQGIAAQIVHVVICGNSVEIPSAVLN
Sbjct: 181 VVFVSGLSIGSSISNPLQFQLLVDHITGHLGDEKEQGIAAQIVHVVICGNSVEIPSAVLN 240

Query: 241 GQHLSTKDRTKLIEPLKELDILLNQLAAGVPVDIMPGSSDPATFSLPQQPLHNCLFPGSS 300
           GQ+LSTKD+TKLIEPLKELDILLNQLAAGVPVDIMPGSSDPATFSLPQQPLHNCLFPGSS
Sbjct: 241 GQYLSTKDQTKLIEPLKELDILLNQLAAGVPVDIMPGSSDPATFSLPQQPLHNCLFPGSS 300

Query: 301 AYNTLRACSNPHCFELDNFSPPHFNRRFFCFRFLGTSGQNIDDLEKYSEAKDKLEFMERT 360
           AYNTLRACSNPHCFELDN            FRFLGTSGQNIDDLEKYSEAKDKLEFMERT
Sbjct: 301 AYNTLRACSNPHCFELDN------------FRFLGTSGQNIDDLEKYSEAKDKLEFMERT 360

Query: 361 LRWRHLAPTAPNTLGCYPFTDRDPFLIESCPHVYFVGNQDKFDTRLMKGPEGQMVRLISI 420
           LRWRHLAPTAPNTLGCYPFTDRDPFLIESCPHVYFVGNQDKFDTRL+KGPEGQMVRLISI
Sbjct: 361 LRWRHLAPTAPNTLGCYPFTDRDPFLIESCPHVYFVGNQDKFDTRLIKGPEGQMVRLISI 420

Query: 421 PRFCEKGTAVMV 433
           PRFCEKGTAVM+
Sbjct: 421 PRFCEKGTAVML 420

[Close]

BLAST of MS023001 vs. ExPASy TrEMBL
Match: A0A5A7TKC4 (DNA polymerase delta small subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G00610 PE=3 SV=1)

HSP 1 Score: 755.0 bits (1948), Expect = 1.7e-214
Identity = 369/433 (85.22%), Postives = 388/433 (89.61%), Query Frame = 0


Query: 1   MGIDSEKNFQRKQCSYQISDEQYNIQNETYRGQLFSHIYFARLHLMRTILLSLVSKWKPH 60
           M IDS KN  RKQC+Y+ISDEQY IQ ETY+GQ +SHIYFARLHLMRTIL SLVS WKPH
Sbjct: 3   MEIDSPKNVHRKQCNYEISDEQYKIQKETYKGQQYSHIYFARLHLMRTILHSLVSNWKPH 62

Query: 61  SPVCTIIELEEGKECIIIGTVYKHMKLKPTILDEYSKERSATPLVKPHNFMHPDDQLVLE 120
            PV T++ LEEGKEC+I+GTVYKHMKLKPTILDEYSKERSA PLVKPHNFMHPDD LVLE
Sbjct: 63  LPVSTVLGLEEGKECVIVGTVYKHMKLKPTILDEYSKERSAIPLVKPHNFMHPDDHLVLE 122

Query: 121 DEGGRVKLSGAV-LPSVYVTGIVVALHGKETCVGDFLVLDILEAGLPPQIELPLISREDK 180
           DE GRVKLSG V LPSVYVTGIV+ALHGKET VGDFLVLDILEA LPPQIE PLIS EDK
Sbjct: 123 DESGRVKLSGDVLLPSVYVTGIVLALHGKETSVGDFLVLDILEADLPPQIERPLISSEDK 182

Query: 181 YVVFVSGLSIGSSISNPLQFQLLVDHITGHLGDEKEQGIAAQIVHVVICGNSVEIPSAVL 240
           YV+FVSGLSIGSSISNPLQFQLLVDHITGHLGDEKEQGIAAQIVHVVICGNSVEIP  +L
Sbjct: 183 YVIFVSGLSIGSSISNPLQFQLLVDHITGHLGDEKEQGIAAQIVHVVICGNSVEIPRGIL 242

Query: 241 NGQHLSTKDRTKLIEPLKELDILLNQLAAGVPVDIMPGSSDPATFSLPQQPLHNCLFPGS 300
           NGQHLS KD+TKL EPLKELDI LNQLAAG+PVDIMPGSSDPA FSLPQQPLH CLFPGS
Sbjct: 243 NGQHLSAKDQTKLTEPLKELDIQLNQLAAGLPVDIMPGSSDPANFSLPQQPLHRCLFPGS 302

Query: 301 SAYNTLRACSNPHCFELDNFSPPHFNRRFFCFRFLGTSGQNIDDLEKYSEAKDKLEFMER 360
           SAYNT R+C+NPHCFELDN             RFLGTSGQN+DDLEKYSEAKDKLEFMER
Sbjct: 303 SAYNTFRSCTNPHCFELDN------------LRFLGTSGQNVDDLEKYSEAKDKLEFMER 362

Query: 361 TLRWRHLAPTAPNTLGCYPFTDRDPFLIESCPHVYFVGNQDKFDTRLMKGPEGQMVRLIS 420
           TLRWRHLAPTAPNTLGCYPFTDRDPFLIESCPHVYF+GNQDKFDTRL+KG EGQMVRLI+
Sbjct: 363 TLRWRHLAPTAPNTLGCYPFTDRDPFLIESCPHVYFIGNQDKFDTRLIKGAEGQMVRLIA 422

Query: 421 IPRFCEKGTAVMV 433
           IPRFCE G AVMV
Sbjct: 423 IPRFCETGIAVMV 423

[Close]

BLAST of MS023001 vs. ExPASy TrEMBL
Match: A0A0A0LF21 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G807320 PE=3 SV=1)

HSP 1 Score: 754.6 bits (1947), Expect = 2.3e-214
Identity = 368/433 (84.99%), Postives = 389/433 (89.84%), Query Frame = 0


Query: 1   MGIDSEKNFQRKQCSYQISDEQYNIQNETYRGQLFSHIYFARLHLMRTILLSLVSKWKPH 60
           M IDS  N  RKQC+Y++SDEQY IQ ETY+GQ +SHIYFARLHLMRTIL SLVS WKPH
Sbjct: 1   MEIDSLTNVHRKQCTYELSDEQYKIQKETYKGQQYSHIYFARLHLMRTILHSLVSNWKPH 60

Query: 61  SPVCTIIELEEGKECIIIGTVYKHMKLKPTILDEYSKERSATPLVKPHNFMHPDDQLVLE 120
            PV T++ LEEGKEC+I+GTVYKHMKLKPTILDEYSKERSA PLVKPHNFMHPDD LVLE
Sbjct: 61  LPVSTVLGLEEGKECVIVGTVYKHMKLKPTILDEYSKERSAIPLVKPHNFMHPDDHLVLE 120

Query: 121 DEGGRVKLSGAV-LPSVYVTGIVVALHGKETCVGDFLVLDILEAGLPPQIELPLISREDK 180
           DE GRVKLSG V LPSVYVTGIV+ALHGKET VGDFLVLDILEA LPPQIE PLIS EDK
Sbjct: 121 DESGRVKLSGDVLLPSVYVTGIVLALHGKETSVGDFLVLDILEADLPPQIERPLISSEDK 180

Query: 181 YVVFVSGLSIGSSISNPLQFQLLVDHITGHLGDEKEQGIAAQIVHVVICGNSVEIPSAVL 240
           YV+FVSGLSIGSSISNPLQFQLLVDHITGHLGDEKEQGIAAQIVHVVICGNSVEIP  +L
Sbjct: 181 YVIFVSGLSIGSSISNPLQFQLLVDHITGHLGDEKEQGIAAQIVHVVICGNSVEIPRGIL 240

Query: 241 NGQHLSTKDRTKLIEPLKELDILLNQLAAGVPVDIMPGSSDPATFSLPQQPLHNCLFPGS 300
           NGQHLS KD+TKL EPLKELDILLNQLAAG+PVDIMPGSSDPA FSLPQQPLH CLFPGS
Sbjct: 241 NGQHLSAKDQTKLTEPLKELDILLNQLAAGLPVDIMPGSSDPANFSLPQQPLHRCLFPGS 300

Query: 301 SAYNTLRACSNPHCFELDNFSPPHFNRRFFCFRFLGTSGQNIDDLEKYSEAKDKLEFMER 360
           SAYNT R+C+NPHCFELDN            FRFLGTSGQN+DDLEKYSEAKDKLEFMER
Sbjct: 301 SAYNTFRSCTNPHCFELDN------------FRFLGTSGQNVDDLEKYSEAKDKLEFMER 360

Query: 361 TLRWRHLAPTAPNTLGCYPFTDRDPFLIESCPHVYFVGNQDKFDTRLMKGPEGQMVRLIS 420
           TLRWRHLAPTAPNTLGCYPFTDRDPFLIESCPHVYF+GNQ+KFDTRLMKG EGQMVRLI+
Sbjct: 361 TLRWRHLAPTAPNTLGCYPFTDRDPFLIESCPHVYFIGNQEKFDTRLMKGAEGQMVRLIA 420

Query: 421 IPRFCEKGTAVMV 433
           IPRFCE G AVM+
Sbjct: 421 IPRFCETGIAVML 421

[Close]

BLAST of MS023001 vs. ExPASy TrEMBL
Match: A0A5D3DQ54 (DNA polymerase delta small subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005420 PE=3 SV=1)

HSP 1 Score: 753.8 bits (1945), Expect = 3.9e-214
Identity = 368/432 (85.19%), Postives = 387/432 (89.58%), Query Frame = 0


Query: 1   MGIDSEKNFQRKQCSYQISDEQYNIQNETYRGQLFSHIYFARLHLMRTILLSLVSKWKPH 60
           M IDS KN  RKQC+Y+ISDEQY IQ ETY+GQ +SHIYFARLHLMRTIL SLVS WKPH
Sbjct: 3   MEIDSPKNVHRKQCNYEISDEQYKIQKETYKGQQYSHIYFARLHLMRTILHSLVSNWKPH 62

Query: 61  SPVCTIIELEEGKECIIIGTVYKHMKLKPTILDEYSKERSATPLVKPHNFMHPDDQLVLE 120
            PV T++ LEEGKEC+I+GTVYKHMKLKPTILDEYSKERSA PLVKPHNFMHPDD LVLE
Sbjct: 63  LPVSTVLGLEEGKECVIVGTVYKHMKLKPTILDEYSKERSAIPLVKPHNFMHPDDHLVLE 122

Query: 121 DEGGRVKLSGAV-LPSVYVTGIVVALHGKETCVGDFLVLDILEAGLPPQIELPLISREDK 180
           DE GRVKLSG V LPSVYVTGIV+ALHGKET VGDFLVLDILEA LPPQIE PLIS EDK
Sbjct: 123 DESGRVKLSGDVLLPSVYVTGIVLALHGKETSVGDFLVLDILEADLPPQIERPLISSEDK 182

Query: 181 YVVFVSGLSIGSSISNPLQFQLLVDHITGHLGDEKEQGIAAQIVHVVICGNSVEIPSAVL 240
           YV+FVSGLSIGSSISNPLQFQLLVDHITGHLGDEKEQGIAAQIVHVVICGNSVEIP  +L
Sbjct: 183 YVIFVSGLSIGSSISNPLQFQLLVDHITGHLGDEKEQGIAAQIVHVVICGNSVEIPRGIL 242

Query: 241 NGQHLSTKDRTKLIEPLKELDILLNQLAAGVPVDIMPGSSDPATFSLPQQPLHNCLFPGS 300
           NGQHLS KD+TKL EPLKELDI LNQLAAG+PVDIMPGSSDPA FSLPQQPLH CLFPGS
Sbjct: 243 NGQHLSAKDQTKLTEPLKELDIQLNQLAAGLPVDIMPGSSDPANFSLPQQPLHRCLFPGS 302

Query: 301 SAYNTLRACSNPHCFELDNFSPPHFNRRFFCFRFLGTSGQNIDDLEKYSEAKDKLEFMER 360
           SAYNT R+C+NPHCFELDN             RFLGTSGQN+DDLEKYSEAKDKLEFMER
Sbjct: 303 SAYNTFRSCTNPHCFELDN------------LRFLGTSGQNVDDLEKYSEAKDKLEFMER 362

Query: 361 TLRWRHLAPTAPNTLGCYPFTDRDPFLIESCPHVYFVGNQDKFDTRLMKGPEGQMVRLIS 420
           TLRWRHLAPTAPNTLGCYPFTDRDPFLIESCPHVYF+GNQDKFDTRL+KG EGQMVRLI+
Sbjct: 363 TLRWRHLAPTAPNTLGCYPFTDRDPFLIESCPHVYFIGNQDKFDTRLIKGAEGQMVRLIA 422

Query: 421 IPRFCEKGTAVM 432
           IPRFCE G AVM
Sbjct: 423 IPRFCETGIAVM 422

[Close]

BLAST of MS023001 vs. ExPASy TrEMBL
Match: A0A1S3B7Y0 (DNA polymerase delta small subunit OS=Cucumis melo OX=3656 GN=LOC103486765 PE=3 SV=1)

HSP 1 Score: 753.8 bits (1945), Expect = 3.9e-214
Identity = 368/433 (84.99%), Postives = 388/433 (89.61%), Query Frame = 0


Query: 1   MGIDSEKNFQRKQCSYQISDEQYNIQNETYRGQLFSHIYFARLHLMRTILLSLVSKWKPH 60
           M IDS KN  RKQC+Y+ISDEQY IQ ETY+GQ +SHIYFARLHLMRTIL SLVS WKPH
Sbjct: 3   MEIDSPKNVHRKQCNYEISDEQYKIQKETYKGQQYSHIYFARLHLMRTILHSLVSNWKPH 62

Query: 61  SPVCTIIELEEGKECIIIGTVYKHMKLKPTILDEYSKERSATPLVKPHNFMHPDDQLVLE 120
            PV T++ LEEGKEC+I+GTVYKHMKLKPTILDEYSKERSA PLVKPHNFMHPDD LVLE
Sbjct: 63  LPVSTVLGLEEGKECVIVGTVYKHMKLKPTILDEYSKERSAIPLVKPHNFMHPDDHLVLE 122

Query: 121 DEGGRVKLSGAV-LPSVYVTGIVVALHGKETCVGDFLVLDILEAGLPPQIELPLISREDK 180
           DE GRVKLSG V LPSVYVTGIV+ALHGKET VGDFLVLDILEA LPPQIE PLIS EDK
Sbjct: 123 DESGRVKLSGDVLLPSVYVTGIVLALHGKETSVGDFLVLDILEADLPPQIERPLISSEDK 182

Query: 181 YVVFVSGLSIGSSISNPLQFQLLVDHITGHLGDEKEQGIAAQIVHVVICGNSVEIPSAVL 240
           YV+FVSGLSIGSSISNPLQFQLLVDHITGHLGDEKEQGIAAQIVHVVICGNSVEIP  +L
Sbjct: 183 YVIFVSGLSIGSSISNPLQFQLLVDHITGHLGDEKEQGIAAQIVHVVICGNSVEIPRGIL 242

Query: 241 NGQHLSTKDRTKLIEPLKELDILLNQLAAGVPVDIMPGSSDPATFSLPQQPLHNCLFPGS 300
           NGQHLS KD+TKL EPLKELDI LNQLAAG+PVDIMPGSSDPA FSLPQQPLH CLFPGS
Sbjct: 243 NGQHLSAKDQTKLTEPLKELDIQLNQLAAGLPVDIMPGSSDPANFSLPQQPLHRCLFPGS 302

Query: 301 SAYNTLRACSNPHCFELDNFSPPHFNRRFFCFRFLGTSGQNIDDLEKYSEAKDKLEFMER 360
           SAYNT R+C+NPHCFELDN             RFLGTSGQN+DDLEKYSEAKDKLEFMER
Sbjct: 303 SAYNTFRSCTNPHCFELDN------------LRFLGTSGQNVDDLEKYSEAKDKLEFMER 362

Query: 361 TLRWRHLAPTAPNTLGCYPFTDRDPFLIESCPHVYFVGNQDKFDTRLMKGPEGQMVRLIS 420
           TLRWRHLAPTAPNTLGCYPFTDRDPFLIESCPHVYF+GNQDKFDTRL+KG EGQMVRLI+
Sbjct: 363 TLRWRHLAPTAPNTLGCYPFTDRDPFLIESCPHVYFIGNQDKFDTRLIKGAEGQMVRLIA 422

Query: 421 IPRFCEKGTAVMV 433
           IPRFCE G AVM+
Sbjct: 423 IPRFCETGIAVML 423

[Close]

BLAST of MS023001 vs. TAIR 10
Match: AT2G42120.2 (DNA polymerase delta small subunit )

HSP 1 Score: 649.8 bits (1675), Expect = 1.5e-186
Identity = 309/433 (71.36%), Postives = 361/433 (83.37%), Query Frame = 0


Query: 1   MGIDSEKNFQRKQCSYQISDEQYNIQNETYRGQLFSHIYFARLHLMRTILLSLVSKWKPH 60
           M IDSEK  +RKQ  Y   DE++ IQ E YRGQ +S IYFARLHLMRT+L SL   WK H
Sbjct: 1   MEIDSEKIHERKQSDYNSLDERFEIQKEMYRGQQYSQIYFARLHLMRTLLYSLAPTWKSH 60

Query: 61  SPVCTIIELEEGKECIIIGTVYKHMKLKPTILDEYSKERSATPLVKPHNFMHPDDQLVLE 120
            PVC ++ LE+GKECII+GT++KHMKLKP +LDEYSKERS TPLVKPHNFMHPDD L+LE
Sbjct: 61  LPVCKVLGLEKGKECIIVGTLFKHMKLKPCVLDEYSKERSVTPLVKPHNFMHPDDNLILE 120

Query: 121 DEGGRVKLSGAVL-PSVYVTGIVVALHGKETCVGDFLVLDILEAGLPPQIELPLISREDK 180
           DE GRVKL+G+ L P++YVTG+VVALHGKET  G+F V D+LEAGLPPQIE P+  +EDK
Sbjct: 121 DESGRVKLAGSALSPAIYVTGVVVALHGKETNAGEFFVEDVLEAGLPPQIERPIDLQEDK 180

Query: 181 YVVFVSGLSIGSSISNPLQFQLLVDHITGHLGDEKEQGIAAQIVHVVICGNSVEIPSAVL 240
           YVV +SGL IGS  +NPLQFQLLVDHITGHLGDE+EQG+AAQIVHVVI GNS E P  ++
Sbjct: 181 YVVLLSGLCIGSKSANPLQFQLLVDHITGHLGDEEEQGLAAQIVHVVIAGNSFEFPRKLI 240

Query: 241 NGQHLSTKDRTKLIEPLKELDILLNQLAAGVPVDIMPGSSDPATFSLPQQPLHNCLFPGS 300
           NGQ+L++KD++ L EP+KELDI+L+Q+AAGV VDIMPG++DPA F+LPQQPL+ CLFPGS
Sbjct: 241 NGQNLASKDQSTLYEPIKELDIMLSQIAAGVSVDIMPGTNDPANFALPQQPLNRCLFPGS 300

Query: 301 SAYNTLRACSNPHCFELDNFSPPHFNRRFFCFRFLGTSGQNIDDLEKYSEAKDKLEFMER 360
           S YNT R+C+NPH F++DN             RFLGTSGQNIDDL KYSEAK KL+F+ER
Sbjct: 301 SPYNTFRSCTNPHSFDVDN------------IRFLGTSGQNIDDLGKYSEAKSKLDFVER 360

Query: 361 TLRWRHLAPTAPNTLGCYPFTDRDPFLIESCPHVYFVGNQDKFDTRLMKGPEGQMVRLIS 420
           TLRWRHLAPTAPNTLGCYPFTDRDPFLIE+CPHVYFVGNQDK+D RL+KG EGQ+VRLI 
Sbjct: 361 TLRWRHLAPTAPNTLGCYPFTDRDPFLIETCPHVYFVGNQDKYDNRLIKGSEGQLVRLIC 420

Query: 421 IPRFCEKGTAVMV 433
           IP+FCE G AV V
Sbjct: 421 IPKFCETGIAVAV 421

[Close]

BLAST of MS023001 vs. TAIR 10
Match: AT2G42120.1 (DNA polymerase delta small subunit )

HSP 1 Score: 647.5 bits (1669), Expect = 7.5e-186
Identity = 309/434 (71.20%), Postives = 362/434 (83.41%), Query Frame = 0


Query: 1   MGIDSEKNFQRKQCSY-QISDEQYNIQNETYRGQLFSHIYFARLHLMRTILLSLVSKWKP 60
           M IDSEK  +RKQ  Y  + DE++ IQ E YRGQ +S IYFARLHLMRT+L SL   WK 
Sbjct: 1   MEIDSEKIHERKQSDYNSLQDERFEIQKEMYRGQQYSQIYFARLHLMRTLLYSLAPTWKS 60

Query: 61  HSPVCTIIELEEGKECIIIGTVYKHMKLKPTILDEYSKERSATPLVKPHNFMHPDDQLVL 120
           H PVC ++ LE+GKECII+GT++KHMKLKP +LDEYSKERS TPLVKPHNFMHPDD L+L
Sbjct: 61  HLPVCKVLGLEKGKECIIVGTLFKHMKLKPCVLDEYSKERSVTPLVKPHNFMHPDDNLIL 120

Query: 121 EDEGGRVKLSGAVL-PSVYVTGIVVALHGKETCVGDFLVLDILEAGLPPQIELPLISRED 180
           EDE GRVKL+G+ L P++YVTG+VVALHGKET  G+F V D+LEAGLPPQIE P+  +ED
Sbjct: 121 EDESGRVKLAGSALSPAIYVTGVVVALHGKETNAGEFFVEDVLEAGLPPQIERPIDLQED 180

Query: 181 KYVVFVSGLSIGSSISNPLQFQLLVDHITGHLGDEKEQGIAAQIVHVVICGNSVEIPSAV 240
           KYVV +SGL IGS  +NPLQFQLLVDHITGHLGDE+EQG+AAQIVHVVI GNS E P  +
Sbjct: 181 KYVVLLSGLCIGSKSANPLQFQLLVDHITGHLGDEEEQGLAAQIVHVVIAGNSFEFPRKL 240

Query: 241 LNGQHLSTKDRTKLIEPLKELDILLNQLAAGVPVDIMPGSSDPATFSLPQQPLHNCLFPG 300
           +NGQ+L++KD++ L EP+KELDI+L+Q+AAGV VDIMPG++DPA F+LPQQPL+ CLFPG
Sbjct: 241 INGQNLASKDQSTLYEPIKELDIMLSQIAAGVSVDIMPGTNDPANFALPQQPLNRCLFPG 300

Query: 301 SSAYNTLRACSNPHCFELDNFSPPHFNRRFFCFRFLGTSGQNIDDLEKYSEAKDKLEFME 360
           SS YNT R+C+NPH F++DN             RFLGTSGQNIDDL KYSEAK KL+F+E
Sbjct: 301 SSPYNTFRSCTNPHSFDVDN------------IRFLGTSGQNIDDLGKYSEAKSKLDFVE 360

Query: 361 RTLRWRHLAPTAPNTLGCYPFTDRDPFLIESCPHVYFVGNQDKFDTRLMKGPEGQMVRLI 420
           RTLRWRHLAPTAPNTLGCYPFTDRDPFLIE+CPHVYFVGNQDK+D RL+KG EGQ+VRLI
Sbjct: 361 RTLRWRHLAPTAPNTLGCYPFTDRDPFLIETCPHVYFVGNQDKYDNRLIKGSEGQLVRLI 420

Query: 421 SIPRFCEKGTAVMV 433
            IP+FCE G AV V
Sbjct: 421 CIPKFCETGIAVAV 422

The following BLAST results are available for this feature:

BLAST of MS023001 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158343.1	7.7e-241	96.06	DNA polymerase delta small subunit [Momordica charantia]	[more]
XP_038906226.1	1.0e-216	85.45	DNA polymerase delta small subunit isoform X3 [Benincasa hispida]	[more]
KAA0043732.1	3.6e-214	85.22	DNA polymerase delta small subunit [Cucumis melo var. makuwa]	[more]
XP_004136567.1	4.7e-214	84.99	DNA polymerase delta small subunit [Cucumis sativus] >KGN59302.1 hypothetical pr...	[more]
TYK25400.1	8.0e-214	85.19	DNA polymerase delta small subunit [Cucumis melo var. makuwa]	[more]

BLAST of MS023001 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O48520	2.1e-185	71.36	DNA polymerase delta small subunit OS=Arabidopsis thaliana OX=3702 GN=POLD2 PE=2...	[more]
Q9LRE5	5.3e-176	69.27	DNA polymerase delta small subunit OS=Oryza sativa subsp. japonica OX=39947 GN=P...	[more]
O35654	1.7e-89	41.75	DNA polymerase delta subunit 2 OS=Mus musculus OX=10090 GN=Pold2 PE=1 SV=2	[more]
Q6AXY4	8.4e-89	41.75	DNA polymerase delta subunit 2 OS=Rattus norvegicus OX=10116 GN=Pold2 PE=1 SV=1	[more]
P49004	7.1e-88	41.88	DNA polymerase delta subunit 2 OS=Bos taurus OX=9913 GN=POLD2 PE=1 SV=2	[more]

BLAST of MS023001 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DVU3	3.7e-241	96.06	DNA polymerase delta small subunit OS=Momordica charantia OX=3673 GN=LOC11102485...	[more]
A0A5A7TKC4	1.7e-214	85.22	DNA polymerase delta small subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E6C...	[more]
A0A0A0LF21	2.3e-214	84.99	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G807320 PE=3 SV=1	[more]
A0A5D3DQ54	3.9e-214	85.19	DNA polymerase delta small subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3B7Y0	3.9e-214	84.99	DNA polymerase delta small subunit OS=Cucumis melo OX=3656 GN=LOC103486765 PE=3 ...	[more]

BLAST of MS023001 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42120.2	1.5e-186	71.36	DNA polymerase delta small subunit	[more]
AT2G42120.1	7.5e-186	71.20	DNA polymerase delta small subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040663	DNA polymerase delta subunit, OB-fold domain	PFAM	PF18018	DNA_pol_D_N	coord: 35..160 e-value: 2.3E-36 score: 124.8
None	No IPR available	GENE3D	3.60.21.50		coord: 173..432 e-value: 2.8E-102 score: 343.9
None	No IPR available	GENE3D	2.40.50.430		coord: 40..163 e-value: 5.1E-35 score: 122.0
IPR007185	DNA polymerase alpha/delta/epsilon, subunit B	PFAM	PF04042	DNA_pol_E_B	coord: 181..404 e-value: 2.3E-43 score: 148.0
IPR024826	DNA polymerase delta/II small subunit family	PANTHER	PTHR10416	DNA POLYMERASE DELTA SUBUNIT 2	coord: 6..432
IPR041863	DNA polymerase delta subunit 2, C-terminal domain	CDD	cd07387	MPP_PolD2_C	coord: 180..432 e-value: 2.81988E-119 score: 346.165

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS023001.1	MS023001.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006260	DNA replication
molecular_function	GO:0003677	DNA binding