MS023000 (gene) Bitter gourd (TR) v1

Overview


Name	MS023000
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold357: 446087 .. 446401 (-)
RNA-Seq Expression	MS023000
Synteny	MS023000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCTTCGATTGTGGTTAATAGCAGCGTTCAGCACGTGACGAAGAAGTCCTCCGACGAGCTGCTGAGGAAATTTGCTGAAGTGGGGGCGGTGGCGGTGGTGAAGCCGCGGCGGAGGAGGGGCCGGATTGTGAGGGAAAATATTGAGCAGTGCGAGAGCCCTGTTGGCGGCGTTGGCGGCGGCGGAGTTGTTGAGCGGCGGCGGCTGATTCCGGCGGCGGGGAGGAACAAATTTGGTATTGGAAATGGAAGGTCTCAGCCGCTGAGGGTTAGGGATTTCAGAAACAAGTCTATCCTTGGAGCCATTCAAAAG

mRNA sequence

ATGGATTCTTCGATTGTGGTTAATAGCAGCGTTCAGCACGTGACGAAGAAGTCCTCCGACGAGCTGCTGAGGAAATTTGCTGAAGTGGGGGCGGTGGCGGTGGTGAAGCCGCGGCGGAGGAGGGGCCGGATTGTGAGGGAAAATATTGAGCAGTGCGAGAGCCCTGTTGGCGGCGTTGGCGGCGGCGGAGTTGTTGAGCGGCGGCGGCTGATTCCGGCGGCGGGGAGGAACAAATTTGGTATTGGAAATGGAAGGTCTCAGCCGCTGAGGGTTAGGGATTTCAGAAACAAGTCTATCCTTGGAGCCATTCAAAAG

Coding sequence (CDS)

ATGGATTCTTCGATTGTGGTTAATAGCAGCGTTCAGCACGTGACGAAGAAGTCCTCCGACGAGCTGCTGAGGAAATTTGCTGAAGTGGGGGCGGTGGCGGTGGTGAAGCCGCGGCGGAGGAGGGGCCGGATTGTGAGGGAAAATATTGAGCAGTGCGAGAGCCCTGTTGGCGGCGTTGGCGGCGGCGGAGTTGTTGAGCGGCGGCGGCTGATTCCGGCGGCGGGGAGGAACAAATTTGGTATTGGAAATGGAAGGTCTCAGCCGCTGAGGGTTAGGGATTTCAGAAACAAGTCTATCCTTGGAGCCATTCAAAAG

Protein sequence

MDSSIVVNSSVQHVTKKSSDELLRKFAEVGAVAVVKPRRRRGRIVRENIEQCESPVGGVGGGGVVERRRLIPAAGRNKFGIGNGRSQPLRVRDFRNKSILGAIQK

Homology

[Close]

BLAST of MS023000 vs. NCBI nr
Match: XP_022158341.1 (uncharacterized protein LOC111024849 [Momordica charantia])

HSP 1 Score: 201.8 bits (512), Expect = 2.9e-48
Identity = 104/105 (99.05%), Postives = 104/105 (99.05%), Query Frame = 0


Query: 1   MDSSIVVNSSVQHVTKKSSDELLRKFAEVGAVAVVKPRRRRGRIVRENIEQCESPVGGVG 60
           MDSSIVVNSSVQHVTKKSSDELLRKFAEVGAVAV KPRRRRGRIVRENIEQCESPVGGVG
Sbjct: 1   MDSSIVVNSSVQHVTKKSSDELLRKFAEVGAVAVAKPRRRRGRIVRENIEQCESPVGGVG 60

Query: 61  GGGVVERRRLIPAAGRNKFGIGNGRSQPLRVRDFRNKSILGAIQK 106
           GGGVVERRRLIPAAGRNKFGIGNGRSQPLRVRDFRNKSILGAIQK
Sbjct: 61  GGGVVERRRLIPAAGRNKFGIGNGRSQPLRVRDFRNKSILGAIQK 105

[Close]

BLAST of MS023000 vs. NCBI nr
Match: XP_008443054.1 (PREDICTED: uncharacterized protein LOC103486764 [Cucumis melo] >KAA0043733.1 uncharacterized protein E6C27_scaffold236G00620 [Cucumis melo var. makuwa] >TYK25399.1 uncharacterized protein E5676_scaffold352G005410 [Cucumis melo var. makuwa])

HSP 1 Score: 107.1 bits (266), Expect = 9.6e-20
Identity = 70/118 (59.32%), Postives = 79/118 (66.95%), Query Frame = 0


Query: 1   MDSSIVVNSSVQHVTKKSSDELLRKFAEVGA--------VAVVKPRRRRGRIVRENIEQC 60
           MDSSI    +VQHV +KSSDELLRKFAEVG+        + VVK RR+     R N E+C
Sbjct: 1   MDSSI---GNVQHVPRKSSDELLRKFAEVGSESGGGRRLLTVVKRRRK-----RVNNEEC 60

Query: 61  ESPVGGVGGGGVVERRRLIPAAGR-----NKFGIGNGRSQPLRVRDFRNKSILGAIQK 106
           +SP     GGGVVER+ LI   GR      K GIGNGRSQ LR+RDFRNKSILGAIQK
Sbjct: 61  DSP----SGGGVVERKWLISPVGRKSVVLKKVGIGNGRSQQLRIRDFRNKSILGAIQK 106

[Close]

BLAST of MS023000 vs. NCBI nr
Match: XP_022935142.1 (uncharacterized protein LOC111442101 [Cucurbita moschata])

HSP 1 Score: 105.5 bits (262), Expect = 2.8e-19
Identity = 67/118 (56.78%), Postives = 77/118 (65.25%), Query Frame = 0


Query: 3   SSIVVNSSVQHVTKKSSDELLRKFAEVGAVA--------VVKPRRRRGRIVRENIEQCES 62
           SS+ VN SVQHV +KSSD+LL+KFAEVG+ +        VVK RRRR        E+CES
Sbjct: 4   SSLGVNGSVQHVPRKSSDQLLKKFAEVGSESGGGRRLSTVVKRRRRRSN------EECES 63

Query: 63  PVGGVGGGGVVERRRLIPAAGRNK-------FGIGNGRSQPLRVRDFRNKSILGAIQK 106
           P     GGGVVER+ LIP AGR          G G+GRSQ LR+RDFRNKS LGAIQK
Sbjct: 64  P----SGGGVVERKWLIPPAGRKSVVLKKIGIGSGSGRSQQLRIRDFRNKSFLGAIQK 111

[Close]

BLAST of MS023000 vs. NCBI nr
Match: XP_023526943.1 (uncharacterized protein LOC111790316 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 104.8 bits (260), Expect = 4.8e-19
Identity = 67/118 (56.78%), Postives = 77/118 (65.25%), Query Frame = 0


Query: 3   SSIVVNSSVQHVTKKSSDELLRKFAEVGAVA--------VVKPRRRRGRIVRENIEQCES 62
           SS+ VN SVQHV +KSSD+LL+KFAEVG+ +        VVK RRRR        E+CES
Sbjct: 4   SSLGVNGSVQHVPRKSSDQLLKKFAEVGSESGGGRRLSTVVKRRRRRPN------EECES 63

Query: 63  PVGGVGGGGVVERRRLIPAAGRNK-------FGIGNGRSQPLRVRDFRNKSILGAIQK 106
           P     GGGVVER+ LIP AGR          G G+GRSQ LR+RDFRNKS LGAIQK
Sbjct: 64  P----SGGGVVERKWLIPPAGRKSVVLKKIGIGSGSGRSQQLRIRDFRNKSFLGAIQK 111

[Close]

BLAST of MS023000 vs. NCBI nr
Match: XP_022983155.1 (uncharacterized protein LOC111481793 [Cucurbita maxima] >KAG7017556.1 hypothetical protein SDJN02_19422, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 104.8 bits (260), Expect = 4.8e-19
Identity = 67/118 (56.78%), Postives = 77/118 (65.25%), Query Frame = 0


Query: 3   SSIVVNSSVQHVTKKSSDELLRKFAEVGAVA--------VVKPRRRRGRIVRENIEQCES 62
           SS+ VN SVQHV +KSSD+LL+KFAEVG+ +        VVK RRRR        E+CES
Sbjct: 4   SSLGVNGSVQHVPRKSSDQLLKKFAEVGSESGGGRRLSTVVKRRRRRPN------EECES 63

Query: 63  PVGGVGGGGVVERRRLIPAAGRNK-------FGIGNGRSQPLRVRDFRNKSILGAIQK 106
           P     GGGVVER+ LIP AGR          G G+GRSQ LR+RDFRNKS LGAIQK
Sbjct: 64  P----SGGGVVERKWLIPPAGRKSVVLKKIGIGSGSGRSQQLRIRDFRNKSFLGAIQK 111

[Close]

BLAST of MS023000 vs. ExPASy TrEMBL
Match: A0A6J1E0N1 (uncharacterized protein LOC111024849 OS=Momordica charantia OX=3673 GN=LOC111024849 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.4e-48
Identity = 104/105 (99.05%), Postives = 104/105 (99.05%), Query Frame = 0


Query: 1   MDSSIVVNSSVQHVTKKSSDELLRKFAEVGAVAVVKPRRRRGRIVRENIEQCESPVGGVG 60
           MDSSIVVNSSVQHVTKKSSDELLRKFAEVGAVAV KPRRRRGRIVRENIEQCESPVGGVG
Sbjct: 1   MDSSIVVNSSVQHVTKKSSDELLRKFAEVGAVAVAKPRRRRGRIVRENIEQCESPVGGVG 60

Query: 61  GGGVVERRRLIPAAGRNKFGIGNGRSQPLRVRDFRNKSILGAIQK 106
           GGGVVERRRLIPAAGRNKFGIGNGRSQPLRVRDFRNKSILGAIQK
Sbjct: 61  GGGVVERRRLIPAAGRNKFGIGNGRSQPLRVRDFRNKSILGAIQK 105

[Close]

BLAST of MS023000 vs. ExPASy TrEMBL
Match: A0A5A7TJU8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005410 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 4.6e-20
Identity = 70/118 (59.32%), Postives = 79/118 (66.95%), Query Frame = 0


Query: 1   MDSSIVVNSSVQHVTKKSSDELLRKFAEVGA--------VAVVKPRRRRGRIVRENIEQC 60
           MDSSI    +VQHV +KSSDELLRKFAEVG+        + VVK RR+     R N E+C
Sbjct: 1   MDSSI---GNVQHVPRKSSDELLRKFAEVGSESGGGRRLLTVVKRRRK-----RVNNEEC 60

Query: 61  ESPVGGVGGGGVVERRRLIPAAGR-----NKFGIGNGRSQPLRVRDFRNKSILGAIQK 106
           +SP     GGGVVER+ LI   GR      K GIGNGRSQ LR+RDFRNKSILGAIQK
Sbjct: 61  DSP----SGGGVVERKWLISPVGRKSVVLKKVGIGNGRSQQLRIRDFRNKSILGAIQK 106

[Close]

BLAST of MS023000 vs. ExPASy TrEMBL
Match: A0A1S3B7W3 (uncharacterized protein LOC103486764 OS=Cucumis melo OX=3656 GN=LOC103486764 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 4.6e-20
Identity = 70/118 (59.32%), Postives = 79/118 (66.95%), Query Frame = 0


Query: 1   MDSSIVVNSSVQHVTKKSSDELLRKFAEVGA--------VAVVKPRRRRGRIVRENIEQC 60
           MDSSI    +VQHV +KSSDELLRKFAEVG+        + VVK RR+     R N E+C
Sbjct: 1   MDSSI---GNVQHVPRKSSDELLRKFAEVGSESGGGRRLLTVVKRRRK-----RVNNEEC 60

Query: 61  ESPVGGVGGGGVVERRRLIPAAGR-----NKFGIGNGRSQPLRVRDFRNKSILGAIQK 106
           +SP     GGGVVER+ LI   GR      K GIGNGRSQ LR+RDFRNKSILGAIQK
Sbjct: 61  DSP----SGGGVVERKWLISPVGRKSVVLKKVGIGNGRSQQLRIRDFRNKSILGAIQK 106

[Close]

BLAST of MS023000 vs. ExPASy TrEMBL
Match: A0A6J1F4R1 (uncharacterized protein LOC111442101 OS=Cucurbita moschata OX=3662 GN=LOC111442101 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.3e-19
Identity = 67/118 (56.78%), Postives = 77/118 (65.25%), Query Frame = 0


Query: 3   SSIVVNSSVQHVTKKSSDELLRKFAEVGAVA--------VVKPRRRRGRIVRENIEQCES 62
           SS+ VN SVQHV +KSSD+LL+KFAEVG+ +        VVK RRRR        E+CES
Sbjct: 4   SSLGVNGSVQHVPRKSSDQLLKKFAEVGSESGGGRRLSTVVKRRRRRSN------EECES 63

Query: 63  PVGGVGGGGVVERRRLIPAAGRNK-------FGIGNGRSQPLRVRDFRNKSILGAIQK 106
           P     GGGVVER+ LIP AGR          G G+GRSQ LR+RDFRNKS LGAIQK
Sbjct: 64  P----SGGGVVERKWLIPPAGRKSVVLKKIGIGSGSGRSQQLRIRDFRNKSFLGAIQK 111

[Close]

BLAST of MS023000 vs. ExPASy TrEMBL
Match: A0A6J1J4Z4 (uncharacterized protein LOC111481793 OS=Cucurbita maxima OX=3661 GN=LOC111481793 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 2.3e-19
Identity = 67/118 (56.78%), Postives = 77/118 (65.25%), Query Frame = 0


Query: 3   SSIVVNSSVQHVTKKSSDELLRKFAEVGAVA--------VVKPRRRRGRIVRENIEQCES 62
           SS+ VN SVQHV +KSSD+LL+KFAEVG+ +        VVK RRRR        E+CES
Sbjct: 4   SSLGVNGSVQHVPRKSSDQLLKKFAEVGSESGGGRRLSTVVKRRRRRPN------EECES 63

Query: 63  PVGGVGGGGVVERRRLIPAAGRNK-------FGIGNGRSQPLRVRDFRNKSILGAIQK 106
           P     GGGVVER+ LIP AGR          G G+GRSQ LR+RDFRNKS LGAIQK
Sbjct: 64  P----SGGGVVERKWLIPPAGRKSVVLKKIGIGSGSGRSQQLRIRDFRNKSFLGAIQK 111

The following BLAST results are available for this feature:

BLAST of MS023000 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158341.1	2.9e-48	99.05	uncharacterized protein LOC111024849 [Momordica charantia]	[more]
XP_008443054.1	9.6e-20	59.32	PREDICTED: uncharacterized protein LOC103486764 [Cucumis melo] >KAA0043733.1 unc...	[more]
XP_022935142.1	2.8e-19	56.78	uncharacterized protein LOC111442101 [Cucurbita moschata]	[more]
XP_023526943.1	4.8e-19	56.78	uncharacterized protein LOC111790316 [Cucurbita pepo subsp. pepo]	[more]
XP_022983155.1	4.8e-19	56.78	uncharacterized protein LOC111481793 [Cucurbita maxima] >KAG7017556.1 hypothetic...	[more]

BLAST of MS023000 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS023000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E0N1	1.4e-48	99.05	uncharacterized protein LOC111024849 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A5A7TJU8	4.6e-20	59.32	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B7W3	4.6e-20	59.32	uncharacterized protein LOC103486764 OS=Cucumis melo OX=3656 GN=LOC103486764 PE=...	[more]
A0A6J1F4R1	1.3e-19	56.78	uncharacterized protein LOC111442101 OS=Cucurbita moschata OX=3662 GN=LOC1114421...	[more]
A0A6J1J4Z4	2.3e-19	56.78	uncharacterized protein LOC111481793 OS=Cucurbita maxima OX=3661 GN=LOC111481793...	[more]

BLAST of MS023000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36355	EXPRESSED PROTEIN	coord: 8..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS023000.1	MS023000.1	mRNA