MS022978 (gene) Bitter gourd (TR) v1

Overview


Name	MS022978
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	AP-3 complex subunit mu
Location	scaffold357: 281152 .. 282002 (+)
RNA-Seq Expression	MS022978
Synteny	MS022978

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGTTAGTAGGAACTCGAAATGATCCTGGAAAGCCAATCGACTCAATAGACGTGCAGTTTCAATTGCCCTCATGCGTTTTATCTGCTGACCTAACTTCAAATTATGGAACAGTGAACATCCTATCTAATAAGGTAACAGCTGCATCACTTTGTATTCAGAAAAATGTTTTATTTAGTTAAATTGAAGAAAAGGAGTTATATCAACTAGTAAAAGATATAAGCAGGTTTCTTCTCTTGGTTGATTGGGCTAAAAAAAAGTCCAAATTGTTGACTTAAGTATAGCCGATTAAAGCATACATTATCAACCGTAAGATCAGAGTTTTTAATCCCCATCCCAAATGTTTAAAGAAAAAAAAGTGTCCAAGTTTATGATTTTGAGCTGATTTAAGATGTTTATGTACTTCTGGAGAAAGTGACACAGTAAATCCCCCCTCTCCCCCTCTTTGTCTTAATGAGTCGATTTGGTTTCTGAATTGTTGTTTCTTTGGGGATACTTTATTATTTTCCTTTTGTTCTTTCATAATCTACTAATCATCAATAAAGTTTCGTTTCTGATAAAAGATAAAAAGGATGGAATTCTGTAATTTCTTGTGAACTTGTTTCTACAGATCTGCTCTTGGACAATTGGAAAGATGCCAAAAGATAAAACCCCATCAATGTCTGGAACATTAACACTTGAGACAGGGTTACAACAGCTTCATCTATTTCCAACATTTCAAGTGTGTTTTAAGATTATGGGCATCGTCCTCTCTGGCCTGCAAGTAGATAAACTTGATGTGAAGAACCTACCAAACCATCCTTACAAAGGCTTTCGAGCTCTCACACGAGCAGGGAAGTTCGAAGTCCGGTCA

mRNA sequence

GTGTTAGTAGGAACTCGAAATGATCCTGGAAAGCCAATCGACTCAATAGACGTGCAGTTTCAATTGCCCTCATGCGTTTTATCTGCTGACCTAACTTCAAATTATGGAACAGTGAACATCCTATCTAATAAGATCTGCTCTTGGACAATTGGAAAGATGCCAAAAGATAAAACCCCATCAATGTCTGGAACATTAACACTTGAGACAGGGTTACAACAGCTTCATCTATTTCCAACATTTCAAGTGTGTTTTAAGATTATGGGCATCGTCCTCTCTGGCCTGCAAGTAGATAAACTTGATGTGAAGAACCTACCAAACCATCCTTACAAAGGCTTTCGAGCTCTCACACGAGCAGGGAAGTTCGAAGTCCGGTCA

Coding sequence (CDS)

GTGTTAGTAGGAACTCGAAATGATCCTGGAAAGCCAATCGACTCAATAGACGTGCAGTTTCAATTGCCCTCATGCGTTTTATCTGCTGACCTAACTTCAAATTATGGAACAGTGAACATCCTATCTAATAAGATCTGCTCTTGGACAATTGGAAAGATGCCAAAAGATAAAACCCCATCAATGTCTGGAACATTAACACTTGAGACAGGGTTACAACAGCTTCATCTATTTCCAACATTTCAAGTGTGTTTTAAGATTATGGGCATCGTCCTCTCTGGCCTGCAAGTAGATAAACTTGATGTGAAGAACCTACCAAACCATCCTTACAAAGGCTTTCGAGCTCTCACACGAGCAGGGAAGTTCGAAGTCCGGTCA

Protein sequence

VLVGTRNDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNILSNKICSWTIGKMPKDKTPSMSGTLTLETGLQQLHLFPTFQVCFKIMGIVLSGLQVDKLDVKNLPNHPYKGFRALTRAGKFEVRS

Homology

[Close]

BLAST of MS022978 vs. NCBI nr
Match: XP_022157023.1 (AP-3 complex subunit mu [Momordica charantia])

HSP 1 Score: 253.8 bits (647), Expect = 7.5e-64
Identity = 123/125 (98.40%), Postives = 124/125 (99.20%), Query Frame = 0


Query: 1   VLVGTRNDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNILSNKICSWTIGKMPKDKTPS 60
           VLVGTRNDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNILSNKICSWTIGKMPKDKTPS
Sbjct: 291 VLVGTRNDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNILSNKICSWTIGKMPKDKTPS 350

Query: 61  MSGTLTLETGLQQLHLFPTFQVCFKIMGIVLSGLQVDKLDVKNLPNHPYKGFRALTRAGK 120
           MSGTLTLETGLQQLH+FPTFQV FKIMGIVLSGLQVDKLDVKNLPNHPYKGFRALTRAGK
Sbjct: 351 MSGTLTLETGLQQLHVFPTFQVRFKIMGIVLSGLQVDKLDVKNLPNHPYKGFRALTRAGK 410

Query: 121 FEVRS 126
           FEVRS
Sbjct: 411 FEVRS 415

[Close]

BLAST of MS022978 vs. NCBI nr
Match: XP_022968736.1 (AP-3 complex subunit mu isoform X2 [Cucurbita maxima])

HSP 1 Score: 246.9 bits (629), Expect = 9.2e-62
Identity = 118/125 (94.40%), Postives = 122/125 (97.60%), Query Frame = 0


Query: 1   VLVGTRNDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNILSNKICSWTIGKMPKDKTPS 60
           VLVG R+DPGKPIDSIDVQFQLPSCVLS DLTSNYGTVNILSNK+CSWTIGKMPKDKTPS
Sbjct: 289 VLVGIRHDPGKPIDSIDVQFQLPSCVLSVDLTSNYGTVNILSNKMCSWTIGKMPKDKTPS 348

Query: 61  MSGTLTLETGLQQLHLFPTFQVCFKIMGIVLSGLQVDKLDVKNLPNHPYKGFRALTRAGK 120
           MSGTLTLETGLQQLH+FPTFQV FKIMG+VLSGLQVDKLDVKNLPNHPYKGFRALTRAGK
Sbjct: 349 MSGTLTLETGLQQLHIFPTFQVRFKIMGVVLSGLQVDKLDVKNLPNHPYKGFRALTRAGK 408

Query: 121 FEVRS 126
           FEVRS
Sbjct: 409 FEVRS 413

[Close]

BLAST of MS022978 vs. NCBI nr
Match: XP_022968735.1 (AP-3 complex subunit mu isoform X1 [Cucurbita maxima])

HSP 1 Score: 246.9 bits (629), Expect = 9.2e-62
Identity = 118/125 (94.40%), Postives = 122/125 (97.60%), Query Frame = 0


Query: 1   VLVGTRNDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNILSNKICSWTIGKMPKDKTPS 60
           VLVG R+DPGKPIDSIDVQFQLPSCVLS DLTSNYGTVNILSNK+CSWTIGKMPKDKTPS
Sbjct: 291 VLVGIRHDPGKPIDSIDVQFQLPSCVLSVDLTSNYGTVNILSNKMCSWTIGKMPKDKTPS 350

Query: 61  MSGTLTLETGLQQLHLFPTFQVCFKIMGIVLSGLQVDKLDVKNLPNHPYKGFRALTRAGK 120
           MSGTLTLETGLQQLH+FPTFQV FKIMG+VLSGLQVDKLDVKNLPNHPYKGFRALTRAGK
Sbjct: 351 MSGTLTLETGLQQLHIFPTFQVRFKIMGVVLSGLQVDKLDVKNLPNHPYKGFRALTRAGK 410

Query: 121 FEVRS 126
           FEVRS
Sbjct: 411 FEVRS 415

[Close]

BLAST of MS022978 vs. NCBI nr
Match: KAG6590499.1 (AP-3 complex subunit mu, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 246.1 bits (627), Expect = 1.6e-61
Identity = 118/125 (94.40%), Postives = 122/125 (97.60%), Query Frame = 0


Query: 1   VLVGTRNDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNILSNKICSWTIGKMPKDKTPS 60
           VLVG R+DPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNILSNK+CSWTIGKMPKDKTPS
Sbjct: 289 VLVGIRHDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNILSNKMCSWTIGKMPKDKTPS 348

Query: 61  MSGTLTLETGLQQLHLFPTFQVCFKIMGIVLSGLQVDKLDVKNLPNHPYKGFRALTRAGK 120
           MSGTLTLETGLQQLH+FPTFQV FKIMG+VLS LQVDKLDVKNLPNHPYKGFRALTRAGK
Sbjct: 349 MSGTLTLETGLQQLHIFPTFQVRFKIMGVVLSALQVDKLDVKNLPNHPYKGFRALTRAGK 408

Query: 121 FEVRS 126
           FEVRS
Sbjct: 409 FEVRS 413

[Close]

BLAST of MS022978 vs. NCBI nr
Match: KAG7024033.1 (AP-3 complex subunit mu [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 246.1 bits (627), Expect = 1.6e-61
Identity = 118/125 (94.40%), Postives = 122/125 (97.60%), Query Frame = 0


Query: 1   VLVGTRNDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNILSNKICSWTIGKMPKDKTPS 60
           VLVG R+DPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNILSNK+CSWTIGKMPKDKTPS
Sbjct: 291 VLVGIRHDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNILSNKMCSWTIGKMPKDKTPS 350

Query: 61  MSGTLTLETGLQQLHLFPTFQVCFKIMGIVLSGLQVDKLDVKNLPNHPYKGFRALTRAGK 120
           MSGTLTLETGLQQLH+FPTFQV FKIMG+VLS LQVDKLDVKNLPNHPYKGFRALTRAGK
Sbjct: 351 MSGTLTLETGLQQLHIFPTFQVRFKIMGVVLSALQVDKLDVKNLPNHPYKGFRALTRAGK 410

Query: 121 FEVRS 126
           FEVRS
Sbjct: 411 FEVRS 415

[Close]

BLAST of MS022978 vs. ExPASy Swiss-Prot
Match: F4I562 (AP-3 complex subunit mu OS=Arabidopsis thaliana OX=3702 GN=AP3M PE=1 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.6e-45
Identity = 84/124 (67.74%), Postives = 106/124 (85.48%), Query Frame = 0


Query: 1   VLVGTRNDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNILSNKICSWTIGKMPKDKTPS 60
           VLVG R+DPGK I+SI + FQLP CV SADL+SN+GTV ILSNK C+WTIG++PKDKTP 
Sbjct: 291 VLVGIRSDPGKTIESITLSFQLPHCVSSADLSSNHGTVTILSNKTCTWTIGRIPKDKTPC 350

Query: 61  MSGTLTLETGLQQLHLFPTFQVCFKIMGIVLSGLQVDKLDVKNLPNHPYKGFRALTRAGK 120
           +SGTL LE GL++LH+FPTF++ FKIMGI LSGL+++KLD++ +P   YKGFRA TRAG+
Sbjct: 351 LSGTLALEPGLERLHVFPTFKLGFKIMGIALSGLRIEKLDLQTIPPRLYKGFRAQTRAGE 410

Query: 121 FEVR 125
           F+VR
Sbjct: 411 FDVR 414

[Close]

BLAST of MS022978 vs. ExPASy Swiss-Prot
Match: P53677 (AP-3 complex subunit mu-2 OS=Homo sapiens OX=9606 GN=AP3M2 PE=1 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 7.7e-19
Identity = 47/126 (37.30%), Postives = 75/126 (59.52%), Query Frame = 0


Query: 1   VLVGTRNDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNI-LSNKICSWTIGKMPKDKTP 60
           + VG +   GK I+ + V  Q+P  VL+  LT + GT       K+ SW +GK+   K P
Sbjct: 293 ITVGPKQTMGKTIEGVTVTSQMPKGVLNMSLTPSQGTHTFDPVTKMLSWDVGKINPQKLP 352

Query: 61  SMSGTLTLETGLQQLHLFPTFQVCFKIMGIVLSGLQVDKLDVKNLPNHPYKGFRALTRAG 120
           S+ GT++L+ G  +    PT  + FKI  + +SGL+V++LD+      P+KG + +T+AG
Sbjct: 353 SLKGTMSLQAGASKPDENPTINLQFKIQQLAISGLKVNRLDMYGEKYKPFKGIKYMTKAG 412

Query: 121 KFEVRS 126
           KF+VR+
Sbjct: 413 KFQVRT 418

[Close]

BLAST of MS022978 vs. ExPASy Swiss-Prot
Match: P53678 (AP-3 complex subunit mu-2 OS=Rattus norvegicus OX=10116 GN=Ap3m2 PE=2 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.7e-18
Identity = 47/126 (37.30%), Postives = 74/126 (58.73%), Query Frame = 0


Query: 1   VLVGTRNDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNI-LSNKICSWTIGKMPKDKTP 60
           + VG +   GK I+ + V  Q+P  VL+  LT + GT       K+ SW +GK+   K P
Sbjct: 293 ITVGPKQTMGKTIEGVTVTSQMPKGVLNMSLTPSQGTHTFDPVTKMLSWDVGKINPQKLP 352

Query: 61  SMSGTLTLETGLQQLHLFPTFQVCFKIMGIVLSGLQVDKLDVKNLPNHPYKGFRALTRAG 120
           S+ GT+ L+ G  +    PT  + FKI  + +SGL+V++LD+      P+KG + +T+AG
Sbjct: 353 SLKGTMGLQVGASKPDENPTINLQFKIQQLAISGLKVNRLDMYGEKYKPFKGIKYMTKAG 412

Query: 121 KFEVRS 126
           KF+VR+
Sbjct: 413 KFQVRT 418

[Close]

BLAST of MS022978 vs. ExPASy Swiss-Prot
Match: Q8R2R9 (AP-3 complex subunit mu-2 OS=Mus musculus OX=10090 GN=Ap3m2 PE=1 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.9e-18
Identity = 47/126 (37.30%), Postives = 74/126 (58.73%), Query Frame = 0


Query: 1   VLVGTRNDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNI-LSNKICSWTIGKMPKDKTP 60
           + VG +   GK I+ + V  Q+P  VL+  LT + GT       K+ SW +GK+   K P
Sbjct: 293 ITVGPKQTMGKTIEGVIVTSQMPKGVLNMSLTPSQGTHTFDPVTKMLSWDVGKINPQKLP 352

Query: 61  SMSGTLTLETGLQQLHLFPTFQVCFKIMGIVLSGLQVDKLDVKNLPNHPYKGFRALTRAG 120
           S+ GT+ L+ G  +    PT  + FKI  + +SGL+V++LD+      P+KG + +T+AG
Sbjct: 353 SLKGTMGLQVGASKPDENPTINLQFKIQQLAISGLKVNRLDMYGEKYKPFKGIKYMTKAG 412

Query: 121 KFEVRS 126
           KF+VR+
Sbjct: 413 KFQVRT 418

[Close]

BLAST of MS022978 vs. ExPASy Swiss-Prot
Match: Q24K11 (AP-3 complex subunit mu-1 OS=Bos taurus OX=9913 GN=AP3M1 PE=2 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.5e-17
Identity = 42/126 (33.33%), Postives = 74/126 (58.73%), Query Frame = 0


Query: 1   VLVGTRNDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNI-LSNKICSWTIGKMPKDKTP 60
           + +G + + GK I+ I V   +P  VL+ +LT   G+       K+ +W +GK+   K P
Sbjct: 293 ITIGPKQNMGKTIEGITVTVHMPKVVLNMNLTPTQGSYTFDPVTKVLTWDVGKITPQKLP 352

Query: 61  SMSGTLTLETGLQQLHLFPTFQVCFKIMGIVLSGLQVDKLDVKNLPNHPYKGFRALTRAG 120
           S+ G + L++G  +    P+  + FKI  + +SGL+V++LD+      P+KG + +T+AG
Sbjct: 353 SLKGLVNLQSGAPKPEENPSLNIQFKIQQLAISGLKVNRLDMYGEKYKPFKGVKYVTKAG 412

Query: 121 KFEVRS 126
           KF+VR+
Sbjct: 413 KFQVRT 418

[Close]

BLAST of MS022978 vs. ExPASy TrEMBL
Match: A0A6J1DSB3 (AP-3 complex subunit mu OS=Momordica charantia OX=3673 GN=LOC111023846 PE=3 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 3.7e-64
Identity = 123/125 (98.40%), Postives = 124/125 (99.20%), Query Frame = 0


Query: 1   VLVGTRNDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNILSNKICSWTIGKMPKDKTPS 60
           VLVGTRNDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNILSNKICSWTIGKMPKDKTPS
Sbjct: 291 VLVGTRNDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNILSNKICSWTIGKMPKDKTPS 350

Query: 61  MSGTLTLETGLQQLHLFPTFQVCFKIMGIVLSGLQVDKLDVKNLPNHPYKGFRALTRAGK 120
           MSGTLTLETGLQQLH+FPTFQV FKIMGIVLSGLQVDKLDVKNLPNHPYKGFRALTRAGK
Sbjct: 351 MSGTLTLETGLQQLHVFPTFQVRFKIMGIVLSGLQVDKLDVKNLPNHPYKGFRALTRAGK 410

Query: 121 FEVRS 126
           FEVRS
Sbjct: 411 FEVRS 415

[Close]

BLAST of MS022978 vs. ExPASy TrEMBL
Match: A0A6J1HY21 (AP-3 complex subunit mu isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467880 PE=3 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 4.5e-62
Identity = 118/125 (94.40%), Postives = 122/125 (97.60%), Query Frame = 0


Query: 1   VLVGTRNDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNILSNKICSWTIGKMPKDKTPS 60
           VLVG R+DPGKPIDSIDVQFQLPSCVLS DLTSNYGTVNILSNK+CSWTIGKMPKDKTPS
Sbjct: 291 VLVGIRHDPGKPIDSIDVQFQLPSCVLSVDLTSNYGTVNILSNKMCSWTIGKMPKDKTPS 350

Query: 61  MSGTLTLETGLQQLHLFPTFQVCFKIMGIVLSGLQVDKLDVKNLPNHPYKGFRALTRAGK 120
           MSGTLTLETGLQQLH+FPTFQV FKIMG+VLSGLQVDKLDVKNLPNHPYKGFRALTRAGK
Sbjct: 351 MSGTLTLETGLQQLHIFPTFQVRFKIMGVVLSGLQVDKLDVKNLPNHPYKGFRALTRAGK 410

Query: 121 FEVRS 126
           FEVRS
Sbjct: 411 FEVRS 415

[Close]

BLAST of MS022978 vs. ExPASy TrEMBL
Match: A0A6J1HVQ3 (AP-3 complex subunit mu isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111467880 PE=3 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 4.5e-62
Identity = 118/125 (94.40%), Postives = 122/125 (97.60%), Query Frame = 0


Query: 1   VLVGTRNDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNILSNKICSWTIGKMPKDKTPS 60
           VLVG R+DPGKPIDSIDVQFQLPSCVLS DLTSNYGTVNILSNK+CSWTIGKMPKDKTPS
Sbjct: 289 VLVGIRHDPGKPIDSIDVQFQLPSCVLSVDLTSNYGTVNILSNKMCSWTIGKMPKDKTPS 348

Query: 61  MSGTLTLETGLQQLHLFPTFQVCFKIMGIVLSGLQVDKLDVKNLPNHPYKGFRALTRAGK 120
           MSGTLTLETGLQQLH+FPTFQV FKIMG+VLSGLQVDKLDVKNLPNHPYKGFRALTRAGK
Sbjct: 349 MSGTLTLETGLQQLHIFPTFQVRFKIMGVVLSGLQVDKLDVKNLPNHPYKGFRALTRAGK 408

Query: 121 FEVRS 126
           FEVRS
Sbjct: 409 FEVRS 413

[Close]

BLAST of MS022978 vs. ExPASy TrEMBL
Match: A0A6J1HE62 (AP-3 complex subunit mu isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111462049 PE=3 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 9.9e-62
Identity = 117/125 (93.60%), Postives = 122/125 (97.60%), Query Frame = 0


Query: 1   VLVGTRNDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNILSNKICSWTIGKMPKDKTPS 60
           VLVG R+DPGKPIDSIDVQFQLPSC+LSADLTSNYGTVNILSNK+CSWTIGKMPKDKTPS
Sbjct: 291 VLVGIRHDPGKPIDSIDVQFQLPSCILSADLTSNYGTVNILSNKMCSWTIGKMPKDKTPS 350

Query: 61  MSGTLTLETGLQQLHLFPTFQVCFKIMGIVLSGLQVDKLDVKNLPNHPYKGFRALTRAGK 120
           MSGTLTLETGLQQLH+FPTFQV FKIMG+VLS LQVDKLDVKNLPNHPYKGFRALTRAGK
Sbjct: 351 MSGTLTLETGLQQLHIFPTFQVRFKIMGVVLSALQVDKLDVKNLPNHPYKGFRALTRAGK 410

Query: 121 FEVRS 126
           FEVRS
Sbjct: 411 FEVRS 415

[Close]

BLAST of MS022978 vs. ExPASy TrEMBL
Match: A0A6J1HCC4 (AP-3 complex subunit mu isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111462049 PE=3 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 9.9e-62
Identity = 117/125 (93.60%), Postives = 122/125 (97.60%), Query Frame = 0


Query: 1   VLVGTRNDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNILSNKICSWTIGKMPKDKTPS 60
           VLVG R+DPGKPIDSIDVQFQLPSC+LSADLTSNYGTVNILSNK+CSWTIGKMPKDKTPS
Sbjct: 289 VLVGIRHDPGKPIDSIDVQFQLPSCILSADLTSNYGTVNILSNKMCSWTIGKMPKDKTPS 348

Query: 61  MSGTLTLETGLQQLHLFPTFQVCFKIMGIVLSGLQVDKLDVKNLPNHPYKGFRALTRAGK 120
           MSGTLTLETGLQQLH+FPTFQV FKIMG+VLS LQVDKLDVKNLPNHPYKGFRALTRAGK
Sbjct: 349 MSGTLTLETGLQQLHIFPTFQVRFKIMGVVLSALQVDKLDVKNLPNHPYKGFRALTRAGK 408

Query: 121 FEVRS 126
           FEVRS
Sbjct: 409 FEVRS 413

[Close]

BLAST of MS022978 vs. TAIR 10
Match: AT1G56590.1 (Clathrin adaptor complexes medium subunit family protein )

HSP 1 Score: 183.3 bits (464), Expect = 1.2e-46
Identity = 84/124 (67.74%), Postives = 106/124 (85.48%), Query Frame = 0


Query: 1   VLVGTRNDPGKPIDSIDVQFQLPSCVLSADLTSNYGTVNILSNKICSWTIGKMPKDKTPS 60
           VLVG R+DPGK I+SI + FQLP CV SADL+SN+GTV ILSNK C+WTIG++PKDKTP 
Sbjct: 291 VLVGIRSDPGKTIESITLSFQLPHCVSSADLSSNHGTVTILSNKTCTWTIGRIPKDKTPC 350

Query: 61  MSGTLTLETGLQQLHLFPTFQVCFKIMGIVLSGLQVDKLDVKNLPNHPYKGFRALTRAGK 120
           +SGTL LE GL++LH+FPTF++ FKIMGI LSGL+++KLD++ +P   YKGFRA TRAG+
Sbjct: 351 LSGTLALEPGLERLHVFPTFKLGFKIMGIALSGLRIEKLDLQTIPPRLYKGFRAQTRAGE 410

Query: 121 FEVR 125
           F+VR
Sbjct: 411 FDVR 414

The following BLAST results are available for this feature:

BLAST of MS022978 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157023.1	7.5e-64	98.40	AP-3 complex subunit mu [Momordica charantia]	[more]
XP_022968736.1	9.2e-62	94.40	AP-3 complex subunit mu isoform X2 [Cucurbita maxima]	[more]
XP_022968735.1	9.2e-62	94.40	AP-3 complex subunit mu isoform X1 [Cucurbita maxima]	[more]
KAG6590499.1	1.6e-61	94.40	AP-3 complex subunit mu, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7024033.1	1.6e-61	94.40	AP-3 complex subunit mu [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of MS022978 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4I562	1.6e-45	67.74	AP-3 complex subunit mu OS=Arabidopsis thaliana OX=3702 GN=AP3M PE=1 SV=1	[more]
P53677	7.7e-19	37.30	AP-3 complex subunit mu-2 OS=Homo sapiens OX=9606 GN=AP3M2 PE=1 SV=1	[more]
P53678	1.7e-18	37.30	AP-3 complex subunit mu-2 OS=Rattus norvegicus OX=10116 GN=Ap3m2 PE=2 SV=1	[more]
Q8R2R9	2.9e-18	37.30	AP-3 complex subunit mu-2 OS=Mus musculus OX=10090 GN=Ap3m2 PE=1 SV=1	[more]
Q24K11	2.5e-17	33.33	AP-3 complex subunit mu-1 OS=Bos taurus OX=9913 GN=AP3M1 PE=2 SV=1	[more]

BLAST of MS022978 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DSB3	3.7e-64	98.40	AP-3 complex subunit mu OS=Momordica charantia OX=3673 GN=LOC111023846 PE=3 SV=1	[more]
A0A6J1HY21	4.5e-62	94.40	AP-3 complex subunit mu isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467880 P...	[more]
A0A6J1HVQ3	4.5e-62	94.40	AP-3 complex subunit mu isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111467880 P...	[more]
A0A6J1HE62	9.9e-62	93.60	AP-3 complex subunit mu isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111462049...	[more]
A0A6J1HCC4	9.9e-62	93.60	AP-3 complex subunit mu isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111462049...	[more]

BLAST of MS022978 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G56590.1	1.2e-46	67.74	Clathrin adaptor complexes medium subunit family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR028565	Mu homology domain	PFAM	PF00928	Adap_comp_sub	coord: 12..124 e-value: 3.9E-17 score: 62.5
IPR028565	Mu homology domain	PROSITE	PS51072	MHD	coord: 1..124 score: 9.764998
None	No IPR available	GENE3D	2.60.40.1170	Mu homology domain, subdomain B	coord: 1..88 e-value: 1.2E-18 score: 69.3
None	No IPR available	PANTHER	PTHR10529:SF340	CARMINE, ISOFORM A	coord: 8..124
None	No IPR available	PANTHER	PTHR10529	AP COMPLEX SUBUNIT MU	coord: 8..124
IPR036168	AP-2 complex subunit mu, C-terminal superfamily	SUPERFAMILY	49447	Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor	coord: 2..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS022978.1	MS022978.1	mRNA