MS022949 (gene) Bitter gourd (TR) v1

Overview


Name	MS022949
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Mediator of RNA polymerase II transcription subunit 7
Location	scaffold357: 37819 .. 39950 (+)
RNA-Seq Expression	MS022949
Synteny	MS022949

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACAGCTACGTATCCTCCACCACCTCCATTTTACAGGCTCTACAAAGATTACTTGCAGAATCCAAAATCGGCGCCGGAGCCTCCCCCGCCCATCGAGGGGACCTACGTGTGCTTTGGCAGCAATTACACTGTGCGACTTCTTCTCGATTCCTTTTCCATTCCTCTGGAAGCATATCGCTATGACACTTGTGTGTTTAATTTCGATTTTGATTTCACATATTCGTTGAGTTTTTTTAGCAGTTTGAGTTTAGTTGCACTTTTTTATCTTTAATTTGATAGTCATAAGACAGAATGATTTTAGGGTTTTAAGTTCTGAAGTTGTTGGTTTCTGCTTCCGAAATCCTTCATATTTTCTCACATTGGGAGTTCATTCTTTATACGTTTTGATCGGGTTGGTAATTGAGATAGGGTCATGATAAACACTGTGATTTGATTTCGTTTATTGATTGTTCTATTGTGATTTCAGACTGATGACGTGCTTCCAAGCTTGGAAGAGCAAGGAGTACGCCAGCTTTACCCTAGAGGACCAAATGTTGGTAAGTAAGTTTATTTACCCGTCCTTCTAAATTTGTGTAAGAATTTGTTCTTCATCAATGGTTTTCTCTTTGATAGGAATCACTATTATTCTCTTAAATAAATTAAAGTTTCATGCTTGAGCATTTATTCGTTTGATTTCTAAGGTCCATGGTCTCTATTTTTTGTTTGGGGTAAGAAAAATACATGTATTGATTAAAGAGGAGGGATGCTGAGGTGAAGGGAGGATTTACAATCCATCCATGAACGGCCAAGGAGGATTACCAGAGAAAACCTGCAATTGGTAAATGCTGAAAGTAAATAATCGTTAAAAGAACCTTTGGCGAAGATAACCGACTAGAGCAGTGAAGTTAGTCTATCCACCAAATTAAATTACACACCTACGAGAGAGGACACACGTACATGTATGCACTCACACACACCTATACACATCCTCTTACTATCTTCCTTTTTCCTTTTAACCACAAATCTTTGGCTTTGCAATTAAACCTAGGACTGCCGGTAATTTGTATTTAGCCTCTGAGCACATGCACAACTGTGATGGCTAAGTATTGACATTCATTTGACTGAAGAGGTTTGGGATATTCCTATTCTGTTGTGTAAGTAATTGAATCTTCGAAATTTGTTCTTGCCGTGAAAATGCATAGGCAGTGCTAGTGGCTGTCATGTTCTTTATAGATTAAAAATCCTGTCCAGTGTAAAACAAAAGAGTCTCTTCACCTGTAACCACAACTTTCTCAGTGAACTCGAATTGAATACTTGGAGTAACTTTCTAGTTTCTCCCCTGCAGCTCTTCCCTTGAATAAACTCTTTTAGCTGACACTATTATCCATGGTTCTTGTTCAGATTTTAAGAAGGAATTGAGATCTCTCAATAGGGAACTGCAGCTTCACATCCTGGAGCTTGCTGATATTCTTGTTGAGAGGCCATCGCAATATGCAAGGAGGGTGGAAGAAATCTCCCTAATATTCAAGAACTTACATCACCTGCTCAATTCATTGCGTCCGCATCAGGTGAGATATTTTTGCATGTTTAAATATGATGTATCTGTGTCATTGAAATAGTTTCATTATGGTGTTTATTTTTCCTTGTAGGCAAGAGCAACACTGATTCACATACTAGAACTTCAGATAGATCGTCGCAGACAAGCTGTTGAGGATATAAAAAGGTATGCCAATAGAGGTTCCAGGGGAATATATTACACGTATGAATGTGATTGAACTTACCCAATCAGCAGTCTTTTCCCCACACCTCTTTCGGTTGAATTATATAATGTCTTAGCCTCTTAGGAAAATATTATGGAACCCCAAAAATTTGGATTTCTGACCCTTTATCATTAATCAATGTTTTGTTTGATCTTATTCTTGGTAGTATAAATCTATTAGGTTGAGATAAGGATGTGCTATTGCAAAATTTTGCGCCCAATACTTCTTCATGTTCTGTATCCTCTCATTTGATTATTTGCTACCTTTTAAAATATGGGTCTCGTCTCACTTAACACTACTTCCATAGTTGATATAATTTTTACCTTCCAGGAGAAGAGAAGAAGCACAGAGACTACTCATGGAGTCCCTTGAAACTTTGGATGGACAC

mRNA sequence

ATGGCGACAGCTACGTATCCTCCACCACCTCCATTTTACAGGCTCTACAAAGATTACTTGCAGAATCCAAAATCGGCGCCGGAGCCTCCCCCGCCCATCGAGGGGACCTACGTGTGCTTTGGCAGCAATTACACTACTGATGACGTGCTTCCAAGCTTGGAAGAGCAAGGAGTACGCCAGCTTTACCCTAGAGGACCAAATGTTGATTTTAAGAAGGAATTGAGATCTCTCAATAGGGAACTGCAGCTTCACATCCTGGAGCTTGCTGATATTCTTGTTGAGAGGCCATCGCAATATGCAAGGAGGGTGGAAGAAATCTCCCTAATATTCAAGAACTTACATCACCTGCTCAATTCATTGCGTCCGCATCAGGCAAGAGCAACACTGATTCACATACTAGAACTTCAGATAGATCGTCGCAGACAAGCTGTTGAGGATATAAAAAGGAGAAGAGAAGAAGCACAGAGACTACTCATGGAGTCCCTTGAAACTTTGGATGGACAC

Coding sequence (CDS)

ATGGCGACAGCTACGTATCCTCCACCACCTCCATTTTACAGGCTCTACAAAGATTACTTGCAGAATCCAAAATCGGCGCCGGAGCCTCCCCCGCCCATCGAGGGGACCTACGTGTGCTTTGGCAGCAATTACACTACTGATGACGTGCTTCCAAGCTTGGAAGAGCAAGGAGTACGCCAGCTTTACCCTAGAGGACCAAATGTTGATTTTAAGAAGGAATTGAGATCTCTCAATAGGGAACTGCAGCTTCACATCCTGGAGCTTGCTGATATTCTTGTTGAGAGGCCATCGCAATATGCAAGGAGGGTGGAAGAAATCTCCCTAATATTCAAGAACTTACATCACCTGCTCAATTCATTGCGTCCGCATCAGGCAAGAGCAACACTGATTCACATACTAGAACTTCAGATAGATCGTCGCAGACAAGCTGTTGAGGATATAAAAAGGAGAAGAGAAGAAGCACAGAGACTACTCATGGAGTCCCTTGAAACTTTGGATGGACAC

Protein sequence

MATATYPPPPPFYRLYKDYLQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQLYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSLRPHQARATLIHILELQIDRRRQAVEDIKRRREEAQRLLMESLETLDGH

Homology

[Close]

BLAST of MS022949 vs. NCBI nr
Match: XP_022151348.1 (mediator of RNA polymerase II transcription subunit 7a-like [Momordica charantia])

HSP 1 Score: 332.4 bits (851), Expect = 2.2e-87
Identity = 166/168 (98.81%), Postives = 166/168 (98.81%), Query Frame = 0


Query: 1   MATATYPPPPPFYRLYKDYLQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPPFYRLYKDYLQNPKSAPEPPPPIEGTY CFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPFYRLYKDYLQNPKSAPEPPPPIEGTYACFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIDRRRQAVEDIKRRREEAQRLLMESLETLDGH 169
           RPHQARATLIHILELQIDRRRQAVEDIKRRREEAQRL MESLETLDGH
Sbjct: 121 RPHQARATLIHILELQIDRRRQAVEDIKRRREEAQRLFMESLETLDGH 168

[Close]

BLAST of MS022949 vs. NCBI nr
Match: XP_022937468.1 (mediator of RNA polymerase II transcription subunit 7a [Cucurbita moschata] >KAG6596657.1 Mediator of RNA polymerase II transcription subunit 7b, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028195.1 Mediator of RNA polymerase II transcription subunit 7b [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 330.5 bits (846), Expect = 8.5e-87
Identity = 165/168 (98.21%), Postives = 167/168 (99.40%), Query Frame = 0


Query: 1   MATATYPPPPPFYRLYKDYLQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPP+YRLYKDY QNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIDRRRQAVEDIKRRREEAQRLLMESLETLDGH 169
           RPHQARATLIHILELQI+RRRQAVEDIKRRREEAQRLLMESLETLDGH
Sbjct: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168

[Close]

BLAST of MS022949 vs. NCBI nr
Match: XP_008443001.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 7a-like [Cucumis melo] >KAA0043764.1 mediator of RNA polymerase II transcription subunit 7a [Cucumis melo var. makuwa] >TYK25369.1 mediator of RNA polymerase II transcription subunit 7a [Cucumis melo var. makuwa])

HSP 1 Score: 328.6 bits (841), Expect = 3.2e-86
Identity = 163/168 (97.02%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MATATYPPPPPFYRLYKDYLQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPPFY+LYKDYLQ+PKSAPEPPPPIEGTY+CFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVD+KKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIDRRRQAVEDIKRRREEAQRLLMESLETLDGH 169
           RPHQARATLIHILELQI+RRRQAVEDIKRRREEAQRLLMESLETLDGH
Sbjct: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168

[Close]

BLAST of MS022949 vs. NCBI nr
Match: XP_023539102.1 (mediator of RNA polymerase II transcription subunit 7a [Cucurbita pepo subsp. pepo])

HSP 1 Score: 328.2 bits (840), Expect = 4.2e-86
Identity = 164/168 (97.62%), Postives = 166/168 (98.81%), Query Frame = 0


Query: 1   MATATYPPPPPFYRLYKDYLQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPP+YRLYKDY QNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVDFKKELR LNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDFKKELRFLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIDRRRQAVEDIKRRREEAQRLLMESLETLDGH 169
           RPHQARATLIHILELQI+RRRQAVEDIKRRREEAQRLLMESLETLDGH
Sbjct: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168

[Close]

BLAST of MS022949 vs. NCBI nr
Match: XP_023005907.1 (mediator of RNA polymerase II transcription subunit 7a [Cucurbita maxima])

HSP 1 Score: 326.6 bits (836), Expect = 1.2e-85
Identity = 164/168 (97.62%), Postives = 166/168 (98.81%), Query Frame = 0


Query: 1   MATATYPPPPPFYRLYKDYLQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPP+YRLYKDY QNPKSAPEPPP IEGTYVCFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPLIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIDRRRQAVEDIKRRREEAQRLLMESLETLDGH 169
           RPHQARATLIHILELQI+RRRQAVEDIKRRREEAQRLLMESLETLDGH
Sbjct: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168

[Close]

BLAST of MS022949 vs. ExPASy Swiss-Prot
Match: Q9LYW3 (Mediator of RNA polymerase II transcription subunit 7a OS=Arabidopsis thaliana OX=3702 GN=MED7A PE=1 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 4.1e-76
Identity = 139/167 (83.23%), Postives = 154/167 (92.22%), Query Frame = 0


Query: 1   MATATYPPPPPFYRLYKDYLQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPP+YRLYKDY +NP SAPEPPPPIEGTYVCFG NYTT+DVLPSLEEQGV Q
Sbjct: 1   MATATYPPPPPYYRLYKDYSENPNSAPEPPPPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+  N+D+K ELRSLNRELQLHILELAD+LV+RPSQYA+R+ EIS IFKNLHHLLNSL
Sbjct: 61  LYPKDSNLDYKNELRSLNRELQLHILELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIDRRRQAVEDIKRRREEAQRLLMESLETLDG 168
           RPHQARATLIHI+ELQI +R+QAVEDIKRRREEAQRLL ++  TLDG
Sbjct: 121 RPHQARATLIHIMELQIQQRKQAVEDIKRRREEAQRLLKDAYLTLDG 167

[Close]

BLAST of MS022949 vs. ExPASy Swiss-Prot
Match: Q9LZD7 (Mediator of RNA polymerase II transcription subunit 7b OS=Arabidopsis thaliana OX=3702 GN=MED7B PE=1 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 1.3e-74
Identity = 137/167 (82.04%), Postives = 153/167 (91.62%), Query Frame = 0


Query: 1   MATATYPPPPPFYRLYKDYLQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPP+YRLYKD+ +N  SAPEPPPPIEGTYVCFG NYTT+DVLPSLEEQGV Q
Sbjct: 1   MATATYPPPPPYYRLYKDFSENTDSAPEPPPPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+  N+D+KKELRSLNRELQLHILELAD+LV+RPSQYA+R+ EIS IFKNLHHLLNSL
Sbjct: 61  LYPKDSNLDYKKELRSLNRELQLHILELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIDRRRQAVEDIKRRREEAQRLLMESLETLDG 168
           RPHQARATLIHI+ELQI +R+QAVEDIKRRREEAQ LL ++  TLDG
Sbjct: 121 RPHQARATLIHIMELQIQQRKQAVEDIKRRREEAQGLLKDAFVTLDG 167

[Close]

BLAST of MS022949 vs. ExPASy Swiss-Prot
Match: Q55DQ5 (Putative mediator of RNA polymerase II transcription subunit 7 OS=Dictyostelium discoideum OX=44689 GN=med7 PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.4e-28
Identity = 65/145 (44.83%), Postives = 94/145 (64.83%), Query Frame = 0


Query: 22  NPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQLYPRGPNVDFKKELRSLNREL 81
           N   AP  PP +   YV FG  Y+T D+LPSL+E G +QLYP+G +++   EL+ LNR +
Sbjct: 139 NKPLAPPLPPKVGANYVQFGQTYSTVDMLPSLDESGAKQLYPKG-DIEPISELKKLNRSI 198

Query: 82  QLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSLRPHQARATLIHILELQIDRRR 141
             + L+L + L+E P  Y  ++E+ISL+F N HHLLNS RPHQAR TL+ I+  QI ++ 
Sbjct: 199 LFNYLQLLETLIENPKNYQSKIEDISLLFINFHHLLNSYRPHQARETLLSIMNEQIKQKN 258

Query: 142 QAVEDIKRRREEAQRLLMESLETLD 167
           Q+ E IK+  +  +  LM S + L+
Sbjct: 259 QSNESIKKALDICKESLMNSFKNLN 282

[Close]

BLAST of MS022949 vs. ExPASy Swiss-Prot
Match: Q17MI0 (Mediator of RNA polymerase II transcription subunit 7 OS=Aedes aegypti OX=7159 GN=MED7 PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 3.9e-26
Identity = 63/161 (39.13%), Postives = 103/161 (63.98%), Query Frame = 0


Query: 8   PPPPFYRLYKDYLQNPKSAPEPPPPIEGTYVCFGSNYTTDD-VLPSLEEQGVRQLYPRGP 67
           PP  +Y+LY D       AP+PP PI+GTY  FG  ++T+D ++  LE QG ++LYP+  
Sbjct: 15  PPAQYYKLYTDENVRNNRAPKPPAPIQGTYQMFGQQFSTEDNIIRPLEAQGFKRLYPQ-- 74

Query: 68  NVDFKKELRSLNRELQLHILELADILVERPS--QYARRVEEISLIFKNLHHLLNSLRPHQ 127
           + D +KEL+ LN  L ++ L+L D+LV  P   Q A ++E+++L+F ++HHLLN  RPHQ
Sbjct: 75  HFDRRKELKKLNHSLLVNFLDLIDLLVHNPDSPQRAEKIEDLNLLFVHIHHLLNEFRPHQ 134

Query: 128 ARATLIHILELQIDRRRQAVEDIKRRREEAQRLLMESLETL 166
           AR TL  ++ELQ  +R++  +  +   E+ + ++  +  +L
Sbjct: 135 ARETLRVMMELQKRQRQETTQRFQNHLEKVREMVNNAFASL 173

[Close]

BLAST of MS022949 vs. ExPASy Swiss-Prot
Match: Q7PR68 (Mediator of RNA polymerase II transcription subunit 7 OS=Anopheles gambiae OX=7165 GN=MED7 PE=3 SV=2)

HSP 1 Score: 110.2 bits (274), Expect = 2.4e-23
Identity = 61/161 (37.89%), Postives = 98/161 (60.87%), Query Frame = 0


Query: 8   PPPPFYRLYKDYLQNPKSAPEPPPPIEGTYVCFGSNYTTDD-VLPSLEEQGVRQLYPRGP 67
           PP  +  LY D       AP+PP PI+  Y  FGS ++ DD ++  LE QG ++LYP+  
Sbjct: 15  PPAQYINLYTDENIRKNRAPKPPAPIQDAYTMFGSPFSNDDNIIRPLESQGFKRLYPQ-- 74

Query: 68  NVDFKKELRSLNRELQLHILELADILVERPS--QYARRVEEISLIFKNLHHLLNSLRPHQ 127
           + D +KEL+ LN  L ++ L+L D+LV  P   + A ++E++SL+F ++HHLLN  RPHQ
Sbjct: 75  HFDRRKELKKLNHSLLVNFLDLIDLLVHYPDSPRRAEKIEDLSLLFVHIHHLLNEFRPHQ 134

Query: 128 ARATLIHILELQIDRRRQAVEDIKRRREEAQRLLMESLETL 166
           AR TL  ++ELQ  +R +  +  +   E+ + ++  +  +L
Sbjct: 135 ARETLRVMMELQKRQRIETAQRFQNHLEKVREMVKNAFASL 173

[Close]

BLAST of MS022949 vs. ExPASy TrEMBL
Match: A0A6J1DBY3 (Mediator of RNA polymerase II transcription subunit 7 OS=Momordica charantia OX=3673 GN=LOC111019312 PE=3 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 1.1e-87
Identity = 166/168 (98.81%), Postives = 166/168 (98.81%), Query Frame = 0


Query: 1   MATATYPPPPPFYRLYKDYLQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPPFYRLYKDYLQNPKSAPEPPPPIEGTY CFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPFYRLYKDYLQNPKSAPEPPPPIEGTYACFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIDRRRQAVEDIKRRREEAQRLLMESLETLDGH 169
           RPHQARATLIHILELQIDRRRQAVEDIKRRREEAQRL MESLETLDGH
Sbjct: 121 RPHQARATLIHILELQIDRRRQAVEDIKRRREEAQRLFMESLETLDGH 168

[Close]

BLAST of MS022949 vs. ExPASy TrEMBL
Match: A0A6J1FG49 (Mediator of RNA polymerase II transcription subunit 7 OS=Cucurbita moschata OX=3662 GN=LOC111443847 PE=3 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 4.1e-87
Identity = 165/168 (98.21%), Postives = 167/168 (99.40%), Query Frame = 0


Query: 1   MATATYPPPPPFYRLYKDYLQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPP+YRLYKDY QNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIDRRRQAVEDIKRRREEAQRLLMESLETLDGH 169
           RPHQARATLIHILELQI+RRRQAVEDIKRRREEAQRLLMESLETLDGH
Sbjct: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168

[Close]

BLAST of MS022949 vs. ExPASy TrEMBL
Match: A0A5A7TKB8 (Mediator of RNA polymerase II transcription subunit 7 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005090 PE=3 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 1.6e-86
Identity = 163/168 (97.02%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MATATYPPPPPFYRLYKDYLQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPPFY+LYKDYLQ+PKSAPEPPPPIEGTY+CFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVD+KKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIDRRRQAVEDIKRRREEAQRLLMESLETLDGH 169
           RPHQARATLIHILELQI+RRRQAVEDIKRRREEAQRLLMESLETLDGH
Sbjct: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168

[Close]

BLAST of MS022949 vs. ExPASy TrEMBL
Match: A0A0A0LBQ7 (Mediator of RNA polymerase II transcription subunit 7 OS=Cucumis sativus OX=3659 GN=Csa_3G791540 PE=3 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 1.6e-86
Identity = 163/168 (97.02%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MATATYPPPPPFYRLYKDYLQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPPFY+LYKDYLQ+PKSAPEPPPPIEGTY+CFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVD+KKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIDRRRQAVEDIKRRREEAQRLLMESLETLDGH 169
           RPHQARATLIHILELQI+RRRQAVEDIKRRREEAQRLLMESLETLDGH
Sbjct: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168

[Close]

BLAST of MS022949 vs. ExPASy TrEMBL
Match: A0A1S3B7S4 (Mediator of RNA polymerase II transcription subunit 7 OS=Cucumis melo OX=3656 GN=LOC103486732 PE=3 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 1.6e-86
Identity = 163/168 (97.02%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MATATYPPPPPFYRLYKDYLQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPPFY+LYKDYLQ+PKSAPEPPPPIEGTY+CFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVD+KKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIDRRRQAVEDIKRRREEAQRLLMESLETLDGH 169
           RPHQARATLIHILELQI+RRRQAVEDIKRRREEAQRLLMESLETLDGH
Sbjct: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168

[Close]

BLAST of MS022949 vs. TAIR 10
Match: AT5G03220.1 (Mediator complex, subunit Med7 )

HSP 1 Score: 285.4 bits (729), Expect = 2.9e-77
Identity = 139/167 (83.23%), Postives = 154/167 (92.22%), Query Frame = 0


Query: 1   MATATYPPPPPFYRLYKDYLQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPP+YRLYKDY +NP SAPEPPPPIEGTYVCFG NYTT+DVLPSLEEQGV Q
Sbjct: 1   MATATYPPPPPYYRLYKDYSENPNSAPEPPPPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+  N+D+K ELRSLNRELQLHILELAD+LV+RPSQYA+R+ EIS IFKNLHHLLNSL
Sbjct: 61  LYPKDSNLDYKNELRSLNRELQLHILELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIDRRRQAVEDIKRRREEAQRLLMESLETLDG 168
           RPHQARATLIHI+ELQI +R+QAVEDIKRRREEAQRLL ++  TLDG
Sbjct: 121 RPHQARATLIHIMELQIQQRKQAVEDIKRRREEAQRLLKDAYLTLDG 167

[Close]

BLAST of MS022949 vs. TAIR 10
Match: AT5G03500.1 (Mediator complex, subunit Med7 )

HSP 1 Score: 280.4 bits (716), Expect = 9.4e-76
Identity = 137/167 (82.04%), Postives = 153/167 (91.62%), Query Frame = 0


Query: 1   MATATYPPPPPFYRLYKDYLQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPP+YRLYKD+ +N  SAPEPPPPIEGTYVCFG NYTT+DVLPSLEEQGV Q
Sbjct: 1   MATATYPPPPPYYRLYKDFSENTDSAPEPPPPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+  N+D+KKELRSLNRELQLHILELAD+LV+RPSQYA+R+ EIS IFKNLHHLLNSL
Sbjct: 61  LYPKDSNLDYKKELRSLNRELQLHILELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIDRRRQAVEDIKRRREEAQRLLMESLETLDG 168
           RPHQARATLIHI+ELQI +R+QAVEDIKRRREEAQ LL ++  TLDG
Sbjct: 121 RPHQARATLIHIMELQIQQRKQAVEDIKRRREEAQGLLKDAFVTLDG 167

[Close]

BLAST of MS022949 vs. TAIR 10
Match: AT5G03500.2 (Mediator complex, subunit Med7 )

HSP 1 Score: 280.4 bits (716), Expect = 9.4e-76
Identity = 137/167 (82.04%), Postives = 153/167 (91.62%), Query Frame = 0


Query: 1   MATATYPPPPPFYRLYKDYLQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPP+YRLYKD+ +N  SAPEPPPPIEGTYVCFG NYTT+DVLPSLEEQGV Q
Sbjct: 1   MATATYPPPPPYYRLYKDFSENTDSAPEPPPPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+  N+D+KKELRSLNRELQLHILELAD+LV+RPSQYA+R+ EIS IFKNLHHLLNSL
Sbjct: 61  LYPKDSNLDYKKELRSLNRELQLHILELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIDRRRQAVEDIKRRREEAQRLLMESLETLDG 168
           RPHQARATLIHI+ELQI +R+QAVEDIKRRREEAQ LL ++  TLDG
Sbjct: 121 RPHQARATLIHIMELQIQQRKQAVEDIKRRREEAQGLLKDAFVTLDG 167

[Close]

BLAST of MS022949 vs. TAIR 10
Match: AT5G03500.3 (Mediator complex, subunit Med7 )

HSP 1 Score: 280.4 bits (716), Expect = 9.4e-76
Identity = 137/167 (82.04%), Postives = 153/167 (91.62%), Query Frame = 0


Query: 1   MATATYPPPPPFYRLYKDYLQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPP+YRLYKD+ +N  SAPEPPPPIEGTYVCFG NYTT+DVLPSLEEQGV Q
Sbjct: 1   MATATYPPPPPYYRLYKDFSENTDSAPEPPPPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+  N+D+KKELRSLNRELQLHILELAD+LV+RPSQYA+R+ EIS IFKNLHHLLNSL
Sbjct: 61  LYPKDSNLDYKKELRSLNRELQLHILELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIDRRRQAVEDIKRRREEAQRLLMESLETLDG 168
           RPHQARATLIHI+ELQI +R+QAVEDIKRRREEAQ LL ++  TLDG
Sbjct: 121 RPHQARATLIHIMELQIQQRKQAVEDIKRRREEAQGLLKDAFVTLDG 167

The following BLAST results are available for this feature:

BLAST of MS022949 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151348.1	2.2e-87	98.81	mediator of RNA polymerase II transcription subunit 7a-like [Momordica charantia...	[more]
XP_022937468.1	8.5e-87	98.21	mediator of RNA polymerase II transcription subunit 7a [Cucurbita moschata] >KAG...	[more]
XP_008443001.1	3.2e-86	97.02	PREDICTED: mediator of RNA polymerase II transcription subunit 7a-like [Cucumis ...	[more]
XP_023539102.1	4.2e-86	97.62	mediator of RNA polymerase II transcription subunit 7a [Cucurbita pepo subsp. pe...	[more]
XP_023005907.1	1.2e-85	97.62	mediator of RNA polymerase II transcription subunit 7a [Cucurbita maxima]	[more]

BLAST of MS022949 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LYW3	4.1e-76	83.23	Mediator of RNA polymerase II transcription subunit 7a OS=Arabidopsis thaliana O...	[more]
Q9LZD7	1.3e-74	82.04	Mediator of RNA polymerase II transcription subunit 7b OS=Arabidopsis thaliana O...	[more]
Q55DQ5	2.4e-28	44.83	Putative mediator of RNA polymerase II transcription subunit 7 OS=Dictyostelium ...	[more]
Q17MI0	3.9e-26	39.13	Mediator of RNA polymerase II transcription subunit 7 OS=Aedes aegypti OX=7159 G...	[more]
Q7PR68	2.4e-23	37.89	Mediator of RNA polymerase II transcription subunit 7 OS=Anopheles gambiae OX=71...	[more]

BLAST of MS022949 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DBY3	1.1e-87	98.81	Mediator of RNA polymerase II transcription subunit 7 OS=Momordica charantia OX=...	[more]
A0A6J1FG49	4.1e-87	98.21	Mediator of RNA polymerase II transcription subunit 7 OS=Cucurbita moschata OX=3...	[more]
A0A5A7TKB8	1.6e-86	97.02	Mediator of RNA polymerase II transcription subunit 7 OS=Cucumis melo var. makuw...	[more]
A0A0A0LBQ7	1.6e-86	97.02	Mediator of RNA polymerase II transcription subunit 7 OS=Cucumis sativus OX=3659...	[more]
A0A1S3B7S4	1.6e-86	97.02	Mediator of RNA polymerase II transcription subunit 7 OS=Cucumis melo OX=3656 GN...	[more]

BLAST of MS022949 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G03220.1	2.9e-77	83.23	Mediator complex, subunit Med7	[more]
AT5G03500.1	9.4e-76	82.04	Mediator complex, subunit Med7	[more]
AT5G03500.2	9.4e-76	82.04	Mediator complex, subunit Med7	[more]
AT5G03500.3	9.4e-76	82.04	Mediator complex, subunit Med7	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 137..164
None	No IPR available	COILS	Coil	Coil	coord: 67..87
None	No IPR available	PANTHER	PTHR21428	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 7	coord: 2..168
IPR044888	Mediator complex, subunit Med7 superfmaily	GENE3D	6.10.140.200		coord: 64..159 e-value: 6.5E-29 score: 101.8
IPR009244	Mediator complex, subunit Med7	PFAM	PF05983	Med7	coord: 4..157 e-value: 3.3E-44 score: 151.3
IPR037212	Mediator complex, subunit Med7/Med21-like	SUPERFAMILY	140718	Mediator hinge subcomplex-like	coord: 66..157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS022949.1	MS022949.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0003712	transcription coregulator activity