MS022703 (gene) Bitter gourd (TR) v1

Overview


Name	MS022703
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Myb_DNA-bind_3 domain-containing protein
Location	scaffold41: 201817 .. 202256 (+)
RNA-Seq Expression	MS022703
Synteny	MS022703

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAATTATGTTATAGTAGTTTATGGCGAGCTGAAAATGGATTCAAAAATGGATATTTGAATCAAATTGAATGTTTGATGTTAGAAAAATTGCCTTCGTCTACCTTAAAGGCATCTCCACACATTGAATCTCGAGTGAAGACGCCAAAGTCCAAATACAATGCATTATCTGAGTTGCTTAGAGATAAAAGTGGATTTAGTTGGAATGATGAACTCATGACATTACAATGTGAAAGAAGTGCATATGATGAATGGGTTAAAGTATGTAAAAGTAATAAAATTTTAGATTCTATATTTAATTCAAATATTCAAATAAGTTATATTTTTTATATTTGTAGGCTCGTAAGGATGCTAGTGGTTTATATGGAAAACCTTTTCCACACTATTATGCTTTAGGAGAAATATTTGGAAAAGATCGTGCCACTGGTCAACATGTTGATACT

mRNA sequence

GAATTATGTTATAGTAGTTTATGGCGAGCTGAAAATGGATTCAAAAATGGATATTTGAATCAAATTGAATGTTTGATGTTAGAAAAATTGCCTTCGTCTACCTTAAAGGCATCTCCACACATTGAATCTCGAGTGAAGACGCCAAAGTCCAAATACAATGCATTATCTGAGTTGCTTAGAGATAAAAGTGGATTTAGTTGGAATGATGAACTCATGACATTACAATGTGAAAGAAGTGCATATGATGAATGGGTTAAAGCTCGTAAGGATGCTAGTGGTTTATATGGAAAACCTTTTCCACACTATTATGCTTTAGGAGAAATATTTGGAAAAGATCGTGCCACTGGTCAACATGTTGATACT

Coding sequence (CDS)

GAATTATGTTATAGTAGTTTATGGCGAGCTGAAAATGGATTCAAAAATGGATATTTGAATCAAATTGAATGTTTGATGTTAGAAAAATTGCCTTCGTCTACCTTAAAGGCATCTCCACACATTGAATCTCGAGTGAAGACGCCAAAGTCCAAATACAATGCATTATCTGAGTTGCTTAGAGATAAAAGTGGATTTAGTTGGAATGATGAACTCATGACATTACAATGTGAAAGAAGTGCATATGATGAATGGGTTAAAGCTCGTAAGGATGCTAGTGGTTTATATGGAAAACCTTTTCCACACTATTATGCTTTAGGAGAAATATTTGGAAAAGATCGTGCCACTGGTCAACATGTTGATACT

Protein sequence

ELCYSSLWRAENGFKNGYLNQIECLMLEKLPSSTLKASPHIESRVKTPKSKYNALSELLRDKSGFSWNDELMTLQCERSAYDEWVKARKDASGLYGKPFPHYYALGEIFGKDRATGQHVDT

Homology

[Close]

BLAST of MS022703 vs. NCBI nr
Match: XP_020419690.1 (uncharacterized protein LOC18776125 isoform X1 [Prunus persica])

HSP 1 Score: 160.2 bits (404), Expect = 1.1e-35
Identity = 75/116 (64.66%), Postives = 92/116 (79.31%), Query Frame = 0


Query: 1   ELCYSSLWRAENGFKNGYLNQIECLMLEKLPSSTLKASPHIESRVKTPKSKYNALSELLR 60
           EL  ++ WR ++GFKNGYLN++E ++  KLP+S LKASPHIESRVKT K KY AL++ L 
Sbjct: 36  ELHQNTNWRGDSGFKNGYLNKLETMLEVKLPNSGLKASPHIESRVKTLKGKYGALADAL- 95

Query: 61  DKSGFSWNDELMTLQCERSAYDEWVKARKDASGLYGKPFPHYYALGEIFGKDRATG 117
            +SGF WN+E M L CE+S +D W K +KDASGLYGK FPHYYALGEI+GKDRA G
Sbjct: 96  SQSGFGWNEEEMMLVCEKSVFDAWAKNKKDASGLYGKSFPHYYALGEIYGKDRAIG 150

[Close]

BLAST of MS022703 vs. NCBI nr
Match: BBH01277.1 (hypothetical protein Prudu_011498 [Prunus dulcis])

HSP 1 Score: 160.2 bits (404), Expect = 1.1e-35
Identity = 75/116 (64.66%), Postives = 92/116 (79.31%), Query Frame = 0


Query: 1   ELCYSSLWRAENGFKNGYLNQIECLMLEKLPSSTLKASPHIESRVKTPKSKYNALSELLR 60
           EL  ++ WR ++GFKNGYLN++E ++  KLP+S LKASPHIESRVKT K KY AL++ L 
Sbjct: 352 ELHQNTKWRGDSGFKNGYLNKLETMLEVKLPNSGLKASPHIESRVKTLKGKYGALADAL- 411

Query: 61  DKSGFSWNDELMTLQCERSAYDEWVKARKDASGLYGKPFPHYYALGEIFGKDRATG 117
            +SGF WN+E M L CE+S +D W K +KDASGLYGK FPHYYALGEI+GKDRA G
Sbjct: 412 SQSGFGWNEEDMMLVCEKSVFDAWAKNKKDASGLYGKSFPHYYALGEIYGKDRAIG 466

[Close]

BLAST of MS022703 vs. NCBI nr
Match: CAB4293592.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 159.8 bits (403), Expect = 1.4e-35
Identity = 75/116 (64.66%), Postives = 91/116 (78.45%), Query Frame = 0


Query: 1   ELCYSSLWRAENGFKNGYLNQIECLMLEKLPSSTLKASPHIESRVKTPKSKYNALSELLR 60
           EL  ++ WR ++GFKNGYLN++E ++  KLP+S LKASPHIESRVKT K KY AL++ L 
Sbjct: 36  ELHQNTNWRGDSGFKNGYLNKLETMLEVKLPNSGLKASPHIESRVKTLKGKYGALADAL- 95

Query: 61  DKSGFSWNDELMTLQCERSAYDEWVKARKDASGLYGKPFPHYYALGEIFGKDRATG 117
            +SGF WN+E M L CE+S +D W K +KDASGLYGK FPHYY LGEIFGKDRA G
Sbjct: 96  SQSGFGWNEEEMMLVCEKSVFDAWAKNKKDASGLYGKSFPHYYTLGEIFGKDRAIG 150

[Close]

BLAST of MS022703 vs. NCBI nr
Match: CAB4283355.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 159.8 bits (403), Expect = 1.4e-35
Identity = 75/116 (64.66%), Postives = 91/116 (78.45%), Query Frame = 0


Query: 1   ELCYSSLWRAENGFKNGYLNQIECLMLEKLPSSTLKASPHIESRVKTPKSKYNALSELLR 60
           EL  ++ WR ++GFKNGYLN++E ++  KLP+S LKASPHIESRVKT K KY AL++ L 
Sbjct: 36  ELHQNTNWRGDSGFKNGYLNKLETMLEVKLPNSGLKASPHIESRVKTLKGKYGALADAL- 95

Query: 61  DKSGFSWNDELMTLQCERSAYDEWVKARKDASGLYGKPFPHYYALGEIFGKDRATG 117
            +SGF WN+E M L CE+S +D W K +KDASGLYGK FPHYY LGEIFGKDRA G
Sbjct: 96  SQSGFGWNEEEMMLVCEKSVFDAWAKNKKDASGLYGKSFPHYYTLGEIFGKDRAIG 150

[Close]

BLAST of MS022703 vs. NCBI nr
Match: ONH94381.1 (hypothetical protein PRUPE_7G013000 [Prunus persica])

HSP 1 Score: 159.5 bits (402), Expect = 1.9e-35
Identity = 75/116 (64.66%), Postives = 91/116 (78.45%), Query Frame = 0


Query: 1   ELCYSSLWRAENGFKNGYLNQIECLMLEKLPSSTLKASPHIESRVKTPKSKYNALSELLR 60
           EL  ++ WR ++GFKNGYLN++E ++  KLP+S LKASPHIESRVKT K KY AL++ L 
Sbjct: 36  ELHQNTNWRGDSGFKNGYLNKLETMLEVKLPNSGLKASPHIESRVKTLKGKYGALADAL- 95

Query: 61  DKSGFSWNDELMTLQCERSAYDEWVKARKDASGLYGKPFPHYYALGEIFGKDRATG 117
            +SGF WN+E M L CE+S +D W K  KDASGLYGK FPHYYALGEI+GKDRA G
Sbjct: 96  SQSGFGWNEEEMMLVCEKSVFDAWAKNNKDASGLYGKSFPHYYALGEIYGKDRAIG 150

[Close]

BLAST of MS022703 vs. ExPASy TrEMBL
Match: A0A4Y1RBD7 (Uncharacterized protein OS=Prunus dulcis OX=3755 GN=Prudu_011498 PE=3 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 5.3e-36
Identity = 75/116 (64.66%), Postives = 92/116 (79.31%), Query Frame = 0


Query: 1   ELCYSSLWRAENGFKNGYLNQIECLMLEKLPSSTLKASPHIESRVKTPKSKYNALSELLR 60
           EL  ++ WR ++GFKNGYLN++E ++  KLP+S LKASPHIESRVKT K KY AL++ L 
Sbjct: 352 ELHQNTKWRGDSGFKNGYLNKLETMLEVKLPNSGLKASPHIESRVKTLKGKYGALADAL- 411

Query: 61  DKSGFSWNDELMTLQCERSAYDEWVKARKDASGLYGKPFPHYYALGEIFGKDRATG 117
            +SGF WN+E M L CE+S +D W K +KDASGLYGK FPHYYALGEI+GKDRA G
Sbjct: 412 SQSGFGWNEEDMMLVCEKSVFDAWAKNKKDASGLYGKSFPHYYALGEIYGKDRAIG 466

[Close]

BLAST of MS022703 vs. ExPASy TrEMBL
Match: M5WDE8 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa014600mg PE=3 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 5.3e-36
Identity = 75/116 (64.66%), Postives = 92/116 (79.31%), Query Frame = 0


Query: 1   ELCYSSLWRAENGFKNGYLNQIECLMLEKLPSSTLKASPHIESRVKTPKSKYNALSELLR 60
           EL  ++ WR ++GFKNGYLN++E ++  KLP+S LKASPHIESRVKT K KY AL++ L 
Sbjct: 380 ELHQNTNWRGDSGFKNGYLNKLETMLEVKLPNSGLKASPHIESRVKTLKGKYGALADAL- 439

Query: 61  DKSGFSWNDELMTLQCERSAYDEWVKARKDASGLYGKPFPHYYALGEIFGKDRATG 117
            +SGF WN+E M L CE+S +D W K +KDASGLYGK FPHYYALGEI+GKDRA G
Sbjct: 440 SQSGFGWNEEEMMLVCEKSVFDAWAKNKKDASGLYGKSFPHYYALGEIYGKDRAIG 494

[Close]

BLAST of MS022703 vs. ExPASy TrEMBL
Match: A0A6J5W0X1 (Myb_DNA-bind_3 domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS2587 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 6.9e-36
Identity = 75/116 (64.66%), Postives = 91/116 (78.45%), Query Frame = 0


Query: 1   ELCYSSLWRAENGFKNGYLNQIECLMLEKLPSSTLKASPHIESRVKTPKSKYNALSELLR 60
           EL  ++ WR ++GFKNGYLN++E ++  KLP+S LKASPHIESRVKT K KY AL++ L 
Sbjct: 36  ELHQNTNWRGDSGFKNGYLNKLETMLEVKLPNSGLKASPHIESRVKTLKGKYGALADAL- 95

Query: 61  DKSGFSWNDELMTLQCERSAYDEWVKARKDASGLYGKPFPHYYALGEIFGKDRATG 117
            +SGF WN+E M L CE+S +D W K +KDASGLYGK FPHYY LGEIFGKDRA G
Sbjct: 96  SQSGFGWNEEEMMLVCEKSVFDAWAKNKKDASGLYGKSFPHYYTLGEIFGKDRAIG 150

[Close]

BLAST of MS022703 vs. ExPASy TrEMBL
Match: A0A6J5V7R2 (Myb_DNA-bind_3 domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS37751 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 6.9e-36
Identity = 75/116 (64.66%), Postives = 91/116 (78.45%), Query Frame = 0


Query: 1   ELCYSSLWRAENGFKNGYLNQIECLMLEKLPSSTLKASPHIESRVKTPKSKYNALSELLR 60
           EL  ++ WR ++GFKNGYLN++E ++  KLP+S LKASPHIESRVKT K KY AL++ L 
Sbjct: 36  ELHQNTNWRGDSGFKNGYLNKLETMLEVKLPNSGLKASPHIESRVKTLKGKYGALADAL- 95

Query: 61  DKSGFSWNDELMTLQCERSAYDEWVKARKDASGLYGKPFPHYYALGEIFGKDRATG 117
            +SGF WN+E M L CE+S +D W K +KDASGLYGK FPHYY LGEIFGKDRA G
Sbjct: 96  SQSGFGWNEEEMMLVCEKSVFDAWAKNKKDASGLYGKSFPHYYTLGEIFGKDRAIG 150

[Close]

BLAST of MS022703 vs. ExPASy TrEMBL
Match: A0A251N4V5 (Myb_DNA-bind_3 domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_7G013000 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 9.1e-36
Identity = 75/116 (64.66%), Postives = 91/116 (78.45%), Query Frame = 0


Query: 1   ELCYSSLWRAENGFKNGYLNQIECLMLEKLPSSTLKASPHIESRVKTPKSKYNALSELLR 60
           EL  ++ WR ++GFKNGYLN++E ++  KLP+S LKASPHIESRVKT K KY AL++ L 
Sbjct: 36  ELHQNTNWRGDSGFKNGYLNKLETMLEVKLPNSGLKASPHIESRVKTLKGKYGALADAL- 95

Query: 61  DKSGFSWNDELMTLQCERSAYDEWVKARKDASGLYGKPFPHYYALGEIFGKDRATG 117
            +SGF WN+E M L CE+S +D W K  KDASGLYGK FPHYYALGEI+GKDRA G
Sbjct: 96  SQSGFGWNEEEMMLVCEKSVFDAWAKNNKDASGLYGKSFPHYYALGEIYGKDRAIG 150

[Close]

BLAST of MS022703 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 46.2 bits (108), Expect = 2.2e-05
Identity = 19/70 (27.14%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 41  IESRVKTPKSKYNALSELLRDKSGFSWNDELMTLQCERSAYDEWVKARKDASGLYGKPFP 100
           +++R K+ + ++NA+  +LR   GF+W++E   +  + + + +++KA +DA     +P P
Sbjct: 237 LKNRYKSLRRQFNAIKSILR-SDGFAWDNERQMVTADNNVWQDYIKAHRDARQFMTRPIP 296

Query: 101 HYYALGEIFG 111
           +Y  L  + G
Sbjct: 297 YYKDLCVLCG 305

[Close]

BLAST of MS022703 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). )

HSP 1 Score: 46.2 bits (108), Expect = 2.2e-05
Identity = 19/70 (27.14%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 41  IESRVKTPKSKYNALSELLRDKSGFSWNDELMTLQCERSAYDEWVKARKDASGLYGKPFP 100
           +++R K+ + ++NA+  +LR   GF+W++E   +  + + + +++KA +DA     +P P
Sbjct: 237 LKNRYKSLRRQFNAIKSILR-SDGFAWDNERQMVTADNNVWQDYIKAHRDARQFMTRPIP 296

Query: 101 HYYALGEIFG 111
           +Y  L  + G
Sbjct: 297 YYKDLCVLCG 305

The following BLAST results are available for this feature:

BLAST of MS022703 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_020419690.1	1.1e-35	64.66	uncharacterized protein LOC18776125 isoform X1 [Prunus persica]	[more]
BBH01277.1	1.1e-35	64.66	hypothetical protein Prudu_011498 [Prunus dulcis]	[more]
CAB4293592.1	1.4e-35	64.66	unnamed protein product [Prunus armeniaca]	[more]
CAB4283355.1	1.4e-35	64.66	unnamed protein product [Prunus armeniaca]	[more]
ONH94381.1	1.9e-35	64.66	hypothetical protein PRUPE_7G013000 [Prunus persica]	[more]

BLAST of MS022703 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS022703 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4Y1RBD7	5.3e-36	64.66	Uncharacterized protein OS=Prunus dulcis OX=3755 GN=Prudu_011498 PE=3 SV=1	[more]
M5WDE8	5.3e-36	64.66	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa014600mg PE=3 SV=1	[more]
A0A6J5W0X1	6.9e-36	64.66	Myb_DNA-bind_3 domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDH...	[more]
A0A6J5V7R2	6.9e-36	64.66	Myb_DNA-bind_3 domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_...	[more]
A0A251N4V5	9.1e-36	64.66	Myb_DNA-bind_3 domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_7G01...	[more]

BLAST of MS022703 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G02210.1	2.2e-05	27.14	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02210.2	2.2e-05	27.14	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 1..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS022703.1	MS022703.1	mRNA