MS022445 (gene) Bitter gourd (TR) v1

Overview


Name	MS022445
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	E3 ubiquitin-protein ligase RMA1H1-like
Location	scaffold47: 3420916 .. 3421608 (-)
RNA-Seq Expression	MS022445
Synteny	MS022445

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCAATACTTTGAGGAGGCCAGTTTGCAGATTAATACCTTTGGAGAGAACAAGTCTTCTCTGGAAAATTGGAAGTCTGTTTTGGATGCCATGGCAGAAACTCATTGTGACACCTCTGGGCTCTTCGACTGTAACATATGCTTAGAGACTGTGAAAGATCCTGTCGTTACACTTTGTGGCCATCTCTTTTGCTGGCCCTGCATTTATAAATGGCTTCATTTTCAGGACAGCTCTACAGAAAAACAAGGCCAGCAACCTCAGCAATGTCCTGTTTGTAAGGCAGAAGTTTCTGATGCTACTCTAGTCCCACTCTATGGCAAAGGTGAAACTCAAGATCCTTTCGAAAGCAAGAATTCGCAGCTTGGAGTCGTCGTCCCTCGCAGGCCTCAGGGTCCTGGTTGCTTTGAGACATCAAGGCCTACCTCTCACTCAGCTCCTCAATTTCGGCGGGGAAATTCTTCTGATCAATCATCAAACAGTTACTATGCTCAGATGACAGGAGTGTTTGGAGAGATGATTTACGCAAGAATGTTTGGTGCAATAACGAATCACTATGCATATCCCAACTCATACCCTCTTGTGTGGAGCAGTAGTCCTAGGATCAGAAGGCATATTTTGGCGACCGATGAATCACTCAACAGAATCTGTATTTTCCTTTTCTGTTTCTCAATTATCTGTCTTCTTTTGTTC

mRNA sequence

ATGGAGCAATACTTTGAGGAGGCCAGTTTGCAGATTAATACCTTTGGAGAGAACAAGTCTTCTCTGGAAAATTGGAAGTCTGTTTTGGATGCCATGGCAGAAACTCATTGTGACACCTCTGGGCTCTTCGACTGTAACATATGCTTAGAGACTGTGAAAGATCCTGTCGTTACACTTTGTGGCCATCTCTTTTGCTGGCCCTGCATTTATAAATGGCTTCATTTTCAGGACAGCTCTACAGAAAAACAAGGCCAGCAACCTCAGCAATGTCCTGTTTGTAAGGCAGAAGTTTCTGATGCTACTCTAGTCCCACTCTATGGCAAAGGTGAAACTCAAGATCCTTTCGAAAGCAAGAATTCGCAGCTTGGAGTCGTCGTCCCTCGCAGGCCTCAGGGTCCTGGTTGCTTTGAGACATCAAGGCCTACCTCTCACTCAGCTCCTCAATTTCGGCGGGGAAATTCTTCTGATCAATCATCAAACAGTTACTATGCTCAGATGACAGGAGTGTTTGGAGAGATGATTTACGCAAGAATGTTTGGTGCAATAACGAATCACTATGCATATCCCAACTCATACCCTCTTGTGTGGAGCAGTAGTCCTAGGATCAGAAGGCATATTTTGGCGACCGATGAATCACTCAACAGAATCTGTATTTTCCTTTTCTGTTTCTCAATTATCTGTCTTCTTTTGTTC

Coding sequence (CDS)

ATGGAGCAATACTTTGAGGAGGCCAGTTTGCAGATTAATACCTTTGGAGAGAACAAGTCTTCTCTGGAAAATTGGAAGTCTGTTTTGGATGCCATGGCAGAAACTCATTGTGACACCTCTGGGCTCTTCGACTGTAACATATGCTTAGAGACTGTGAAAGATCCTGTCGTTACACTTTGTGGCCATCTCTTTTGCTGGCCCTGCATTTATAAATGGCTTCATTTTCAGGACAGCTCTACAGAAAAACAAGGCCAGCAACCTCAGCAATGTCCTGTTTGTAAGGCAGAAGTTTCTGATGCTACTCTAGTCCCACTCTATGGCAAAGGTGAAACTCAAGATCCTTTCGAAAGCAAGAATTCGCAGCTTGGAGTCGTCGTCCCTCGCAGGCCTCAGGGTCCTGGTTGCTTTGAGACATCAAGGCCTACCTCTCACTCAGCTCCTCAATTTCGGCGGGGAAATTCTTCTGATCAATCATCAAACAGTTACTATGCTCAGATGACAGGAGTGTTTGGAGAGATGATTTACGCAAGAATGTTTGGTGCAATAACGAATCACTATGCATATCCCAACTCATACCCTCTTGTGTGGAGCAGTAGTCCTAGGATCAGAAGGCATATTTTGGCGACCGATGAATCACTCAACAGAATCTGTATTTTCCTTTTCTGTTTCTCAATTATCTGTCTTCTTTTGTTC

Protein sequence

MEQYFEEASLQINTFGENKSSLENWKSVLDAMAETHCDTSGLFDCNICLETVKDPVVTLCGHLFCWPCIYKWLHFQDSSTEKQGQQPQQCPVCKAEVSDATLVPLYGKGETQDPFESKNSQLGVVVPRRPQGPGCFETSRPTSHSAPQFRRGNSSDQSSNSYYAQMTGVFGEMIYARMFGAITNHYAYPNSYPLVWSSSPRIRRHILATDESLNRICIFLFCFSIICLLLF

Homology

[Close]

BLAST of MS022445 vs. NCBI nr
Match: XP_022147841.1 (E3 ubiquitin-protein ligase RMA1H1-like [Momordica charantia] >XP_022147842.1 E3 ubiquitin-protein ligase RMA1H1-like [Momordica charantia])

HSP 1 Score: 479.9 bits (1234), Expect = 1.2e-131
Identity = 229/231 (99.13%), Postives = 230/231 (99.57%), Query Frame = 0


Query: 1   MEQYFEEASLQINTFGENKSSLENWKSVLDAMAETHCDTSGLFDCNICLETVKDPVVTLC 60
           MEQYFEEASLQINTFGENKSSLENWKSVLDAMAETHCDTSGLFDCNICLETVKDPVVTLC
Sbjct: 3   MEQYFEEASLQINTFGENKSSLENWKSVLDAMAETHCDTSGLFDCNICLETVKDPVVTLC 62

Query: 61  GHLFCWPCIYKWLHFQDSSTEKQGQQPQQCPVCKAEVSDATLVPLYGKGETQDPFESKNS 120
           GHLFCWPCIYKWLHFQDSSTEKQGQQPQQCPVCKAEVSDATLVPLYGKGETQDPFESKNS
Sbjct: 63  GHLFCWPCIYKWLHFQDSSTEKQGQQPQQCPVCKAEVSDATLVPLYGKGETQDPFESKNS 122

Query: 121 QLGVVVPRRPQGPGCFETSRPTSHSAPQFRRGNSSDQSSNSYYAQMTGVFGEMIYARMFG 180
           QLGVVVPRRPQGPGC ETSRPTSHSAPQFRRGNSSDQSSN+YYAQMTGVFGEMIYARMFG
Sbjct: 123 QLGVVVPRRPQGPGCSETSRPTSHSAPQFRRGNSSDQSSNNYYAQMTGVFGEMIYARMFG 182

Query: 181 AITNHYAYPNSYPLVWSSSPRIRRHILATDESLNRICIFLFCFSIICLLLF 232
           AITNHYAYPNSYPLVWSSSPRIRRHILATDESLNRICIFLFCFSIICLLLF
Sbjct: 183 AITNHYAYPNSYPLVWSSSPRIRRHILATDESLNRICIFLFCFSIICLLLF 233

[Close]

BLAST of MS022445 vs. NCBI nr
Match: XP_011658745.1 (E3 ubiquitin-protein ligase RMA1H1 [Cucumis sativus] >XP_031745015.1 E3 ubiquitin-protein ligase RMA1H1 [Cucumis sativus] >KAE8645771.1 hypothetical protein Csa_020520 [Cucumis sativus])

HSP 1 Score: 411.0 bits (1055), Expect = 6.8e-111
Identity = 198/237 (83.54%), Postives = 211/237 (89.03%), Query Frame = 0


Query: 1   MEQYFEEASLQINTFGENKSSLENWKSVLDAMAETHCDTSGLFDCNICLETVKDPVVTLC 60
           MEQYFEEAS+QIN+FGENKSSLENWKSVLDAMAETHCD SGLFDCNICLETVKDPVVTLC
Sbjct: 3   MEQYFEEASIQINSFGENKSSLENWKSVLDAMAETHCDASGLFDCNICLETVKDPVVTLC 62

Query: 61  GHLFCWPCIYKWLHFQDSSTEKQGQQPQQCPVCKAEVSDATLVPLYGKGETQDPFESKNS 120
           GHLFCWPCIYKW+H+QDSS EK+ ++  QCPVCKAEVSDATLVPLYGKGETQDPFESKN 
Sbjct: 63  GHLFCWPCIYKWIHYQDSSLEKKARRLPQCPVCKAEVSDATLVPLYGKGETQDPFESKNP 122

Query: 121 QLGVVVPRRPQGPGCFETSRPTSHS-----APQFRRGNS-SDQSSNSYYAQMTGVFGEMI 180
           QLG+VVPRRPQGP CFE+ RPTSH       PQFR GNS S   SN YYA+MTGVFGE++
Sbjct: 123 QLGIVVPRRPQGPACFESPRPTSHPTSHTVGPQFREGNSDSADQSNVYYAEMTGVFGEVV 182

Query: 181 YARMFGAITNHYAYPNSYPLVWSSSPRIRRHILATDESLNRICIFLFCFSIICLLLF 232
           YARM GAITN YAYPNSYPLVWSSSPRIRRHIL TDESLNRICIFLFC  IICL+LF
Sbjct: 183 YARMSGAITNLYAYPNSYPLVWSSSPRIRRHILQTDESLNRICIFLFCCLIICLILF 239

[Close]

BLAST of MS022445 vs. NCBI nr
Match: XP_038888270.1 (E3 ubiquitin-protein ligase RMA1H1 [Benincasa hispida])

HSP 1 Score: 407.9 bits (1047), Expect = 5.8e-110
Identity = 196/236 (83.05%), Postives = 211/236 (89.41%), Query Frame = 0


Query: 1   MEQYFEEASLQINTFGENKSSLENWKSVLDAMAETHCDTSGLFDCNICLETVKDPVVTLC 60
           MEQYFEEAS+QIN+FGENKSSLENWKSVLDAMAETHCD SGLFDCNICLETVKDPVVTLC
Sbjct: 3   MEQYFEEASIQINSFGENKSSLENWKSVLDAMAETHCDASGLFDCNICLETVKDPVVTLC 62

Query: 61  GHLFCWPCIYKWLHFQDSSTEKQGQQPQQCPVCKAEVSDATLVPLYGKGETQDPFESKNS 120
           GHLFCWPCIYKWLH+QDSS EKQ ++  QCPVCKAEVSDATLVPLYGKG+T+D FESKN+
Sbjct: 63  GHLFCWPCIYKWLHYQDSSLEKQARRLPQCPVCKAEVSDATLVPLYGKGKTRDSFESKNT 122

Query: 121 QLGVVVPRRPQGPGCFE----TSRPTSHSAPQFRRGNS-SDQSSNSYYAQMTGVFGEMIY 180
           QLG+VVPRRP GP CFE    TS PTSH+ PQ+R+GNS S   SN YYA+MTG FGE++Y
Sbjct: 123 QLGIVVPRRPHGPACFESPRPTSHPTSHTVPQYRQGNSDSSDQSNVYYAEMTGAFGEVVY 182

Query: 181 ARMFGAITNHYAYPNSYPLVWSSSPRIRRHILATDESLNRICIFLFCFSIICLLLF 232
           ARM GAITN YAYPNSYPLVWSSSPRIRRHIL TDESLNRICIFLFC  IICLLLF
Sbjct: 183 ARMSGAITNLYAYPNSYPLVWSSSPRIRRHILQTDESLNRICIFLFCCLIICLLLF 238

[Close]

BLAST of MS022445 vs. NCBI nr
Match: XP_022988938.1 (E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita maxima] >XP_022988939.1 E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita maxima] >XP_022988940.1 E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita maxima])

HSP 1 Score: 407.5 bits (1046), Expect = 7.5e-110
Identity = 200/231 (86.58%), Postives = 210/231 (90.91%), Query Frame = 0


Query: 1   MEQYFEEASLQINTFGENKSSLENWKSVLDAMAETHCDTSGLFDCNICLETVKDPVVTLC 60
           MEQYFEE    IN+FGENKSS+ENWKS LDAMAET CD+SGLFDCNICLETVKDPVVTLC
Sbjct: 3   MEQYFEE----INSFGENKSSVENWKSALDAMAETQCDSSGLFDCNICLETVKDPVVTLC 62

Query: 61  GHLFCWPCIYKWLHFQDSSTEKQGQQPQQCPVCKAEVSDATLVPLYGKGETQDPFESKNS 120
           GHLFCWPCIYKWLHFQDSSTEKQGQ+ QQCPVCKAEVSDATLVPLYGKGETQDPFESKNS
Sbjct: 63  GHLFCWPCIYKWLHFQDSSTEKQGQRLQQCPVCKAEVSDATLVPLYGKGETQDPFESKNS 122

Query: 121 QLGVVVPRRPQGPGCFETSRPTSHSAPQFRRGNSSDQSSNSYYAQMTGVFGEMIYARMFG 180
           QLG+VVPRRPQGP CFE+ R TSH   QF++GN SDQ SN YYA+  GVFGEM+YARMFG
Sbjct: 123 QLGIVVPRRPQGPACFESPRATSHPVLQFQQGNLSDQ-SNIYYAE--GVFGEMVYARMFG 182

Query: 181 AITNHYAYPNSYPLVWSSSPRIRRHILATDESLNRICIFLFCFSIICLLLF 232
           AITN YAYPNSYPLVWSSSPRIRRHIL TDESLNRICIFLFC SIICLLLF
Sbjct: 183 AITNLYAYPNSYPLVWSSSPRIRRHILQTDESLNRICIFLFCCSIICLLLF 226

[Close]

BLAST of MS022445 vs. NCBI nr
Match: XP_008455327.1 (PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Cucumis melo] >XP_008455328.1 PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Cucumis melo] >XP_008455329.1 PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Cucumis melo] >KAA0031578.1 E3 ubiquitin-protein ligase RMA1H1 [Cucumis melo var. makuwa] >TYK07030.1 E3 ubiquitin-protein ligase RMA1H1 [Cucumis melo var. makuwa])

HSP 1 Score: 407.1 bits (1045), Expect = 9.8e-110
Identity = 197/237 (83.12%), Postives = 209/237 (88.19%), Query Frame = 0


Query: 1   MEQYFEEASLQINTFGENKSSLENWKSVLDAMAETHCDTSGLFDCNICLETVKDPVVTLC 60
           MEQYFEEAS+QIN+FGENKSSLENWKSVLDAMAETHCD SGLFDCNICLETVKDPVVTLC
Sbjct: 3   MEQYFEEASIQINSFGENKSSLENWKSVLDAMAETHCDASGLFDCNICLETVKDPVVTLC 62

Query: 61  GHLFCWPCIYKWLHFQDSSTEKQGQQPQQCPVCKAEVSDATLVPLYGKGETQDPFESKNS 120
           GHLFCWPCIYKW+HFQDSS EKQ ++  QCPVCKAEVSDATLVPLYGKGETQ+P ESKN 
Sbjct: 63  GHLFCWPCIYKWIHFQDSSLEKQARRLPQCPVCKAEVSDATLVPLYGKGETQNPLESKNP 122

Query: 121 QLGVVVPRRPQGPGCFETSRPTSHS-----APQFRRGNS-SDQSSNSYYAQMTGVFGEMI 180
           QLG+VVPRRPQGP CFE+ RPTSH       PQFR G+S S   SN YYAQ+TG FGE++
Sbjct: 123 QLGIVVPRRPQGPACFESPRPTSHPTSHTVGPQFREGSSDSSDQSNVYYAQVTGAFGEVV 182

Query: 181 YARMFGAITNHYAYPNSYPLVWSSSPRIRRHILATDESLNRICIFLFCFSIICLLLF 232
           YARM GAITN YAYPNSYPLVWSSSPRIRRHIL TDESLNRICIFLFC  IICLLLF
Sbjct: 183 YARMSGAITNLYAYPNSYPLVWSSSPRIRRHILQTDESLNRICIFLFCCLIICLLLF 239

[Close]

BLAST of MS022445 vs. ExPASy Swiss-Prot
Match: Q6R567 (E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.3e-51
Identity = 113/243 (46.50%), Postives = 145/243 (59.67%), Query Frame = 0


Query: 14  TFGENKSSLENWKSVLDAMAETHCDTSGLFDCNICLETVKDPVVTLCGHLFCWPCIYKWL 73
           TF ++ + L  WKS+ D + E   + SG FDCNICL+ V +PV+TLCGHL+CWPCIYKW+
Sbjct: 13  TFNKHDTPLGKWKSMNDEVEE---NISGGFDCNICLDCVHEPVITLCGHLYCWPCIYKWI 72

Query: 74  HFQDSSTEKQGQQPQQCPVCKAEVSDATLVPLYGK-GETQDPFESKNSQLGVVVPRRPQG 133
           +FQ  S+E   QQ  QCPVCKAEVS+ TL+PLYG+ G++  P E K   LG+V+P+RP  
Sbjct: 73  YFQSVSSENSDQQQPQCPVCKAEVSEKTLIPLYGRGGQSTKPSEGKAPNLGIVIPQRPPS 132

Query: 134 PGC-FETSRPTSHSAPQ---FRRGNSSDQSS------NSYYAQ-------------MTGV 193
           P C      PT+ S P     RRG      +       SY +                 +
Sbjct: 133 PRCGGHFLLPTTDSNPSQLLQRRGYQQQSQTRQPAYQGSYMSSPMLSPGGATANMLQHSM 192

Query: 194 FGEMIYARMFG-AITNHYAYPNSYPLVWSSSPRIRRHILATDESLNRICIFLFCFSIICL 232
            GE+ YAR+FG + T  Y YPNSY L  SSSPR+RR +   D SL RIC FLFC  + CL
Sbjct: 193 IGEVAYARIFGNSSTTMYTYPNSYNLAISSSPRMRRQLSQADRSLGRICFFLFCCFVTCL 252

[Close]

BLAST of MS022445 vs. ExPASy Swiss-Prot
Match: O64425 (E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana OX=3702 GN=RMA1 PE=1 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 3.1e-42
Identity = 104/253 (41.11%), Postives = 145/253 (57.31%), Query Frame = 0


Query: 1   MEQYFEEASLQINTFGENKSSLENWKSVLDAMAETHCDT-SGLFDCNICLETVKDPVVTL 60
           ++Q FE+A+L    +GE     ++ K     ++    DT    FDCNICL++V++PVVTL
Sbjct: 3   LDQSFEDAALLGELYGEGAFCFKSKKPEPITVSVPSDDTDDSNFDCNICLDSVQEPVVTL 62

Query: 61  CGHLFCWPCIYKWLHFQDSSTEKQGQQPQQCPVCKAEVSDATLVPLYGKGETQDPFESKN 120
           CGHLFCWPCI+KWL  Q  ST  + Q+ +QCPVCK++VS +TLVPLYG+G      E KN
Sbjct: 63  CGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCKSKVSHSTLVPLYGRGRCTTQEEGKN 122

Query: 121 SQLGVVVPRRPQGPGCFETSRPTS--------------HSAPQ---FRRGNSSDQSSNSY 180
           S     VP+RP GP  +    P S               ++PQ   +        +S SY
Sbjct: 123 S-----VPKRPVGP-VYRLEMPNSPYASTDLRLSQRVHFNSPQEGYYPVSGVMSSNSLSY 182

Query: 181 YAQMTGVF---GEMIYARMFGA-ITNHYAYPNSYPLVWSSSPRIRRHILATDESLNRICI 232
            A +  V    GEM+  R+FG  + + +AYP++Y L  +S PR+RR I+  D+SL RI  
Sbjct: 183 SAVLDPVMVMVGEMVATRLFGTRVMDRFAYPDTYNLAGTSGPRMRRRIMQADKSLGRIFF 242

[Close]

BLAST of MS022445 vs. ExPASy Swiss-Prot
Match: Q8GUK7 (E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.4e-34
Identity = 86/217 (39.63%), Postives = 115/217 (53.00%), Query Frame = 0


Query: 40  SGLFDCNICLETVKDPVVTLCGHLFCWPCIYKWLHFQDSSTEKQGQQPQQCPVCKAEVSD 99
           SG FDCNICL+T  DPVVTLCGHLFCWPCIYKWLH Q SS     Q    CPVCK+ ++ 
Sbjct: 39  SGCFDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQLSSVSVD-QHQNNCPVCKSNITI 98

Query: 100 ATLVPLYGKG--ETQDPFESKNSQ-LGVVVPRRPQGPGC---------------FETSRP 159
            +LVPLYG+G       F SK    L   +PRRP                     +T  P
Sbjct: 99  TSLVPLYGRGMSSPSSTFGSKKQDALSTDIPRRPAPSALRNPITSASSLNPSLQHQTLSP 158

Query: 160 TSHSAPQFRRGNSSDQSSN-------SYYAQMTGVFGEMIYARMFGAITNHYAYPNSYPL 219
           + H+     RG ++ +S++       S+   + G+FG+++Y R+FG  TN  A P     
Sbjct: 159 SFHNHQYSPRGFTTTESTDLANAVMMSFLYPVIGMFGDLVYTRIFGTFTNTIAQPYQ--- 218

Query: 220 VWSSSPRIRRHILATDESLNRICIFLFCFSIICLLLF 232
                    + ++  ++SLNR+ IF  C  I+CLLLF
Sbjct: 219 --------SQRMMQREKSLNRVSIFFLCCIILCLLLF 243

[Close]

BLAST of MS022445 vs. ExPASy Swiss-Prot
Match: P93030 (E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana OX=3702 GN=RMA2 PE=1 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 7.7e-33
Identity = 82/205 (40.00%), Postives = 115/205 (56.10%), Query Frame = 0


Query: 35  THCDTSGLFDCNICLETVKDPVVTLCGHLFCWPCIYKWLHFQDSSTEKQGQ-----QPQQ 94
           T  D+ G FDCNICL+ V+DPVVTLCGHLFCWPCI+KW +  ++S ++  Q     +P +
Sbjct: 11  TLVDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPK 70

Query: 95  CPVCKAEVSDATLVPLYGKGETQDPFESKNSQLGVVVPRRPQGPGCFETSRPTSHSAPQF 154
           CPVCK++VS+ATLVP+YG+G+       K  Q G  VP RP GP          +     
Sbjct: 71  CPVCKSDVSEATLVPIYGRGQ-------KAPQSGSNVPSRPTGP---------VYDLRGV 130

Query: 155 RRGNSSDQSSNSYYAQ---MTGVFGEMIYARMFGAITNHYAYPNSYPLVWSSSPRIRRHI 214
            +     +S    Y     + GV  EM+Y R+FG  +++ A           + R RR  
Sbjct: 131 GQRLGEGESQRYMYRMPDPVMGVVCEMVYRRLFGESSSNMAPYR------DMNVRSRRRA 190

Query: 215 LATDESLNRICIFLFCFSIICLLLF 232
           +  +ESL+R+ +FL CF  +CL LF
Sbjct: 191 MQAEESLSRVYLFLLCFMFMCLFLF 193

[Close]

BLAST of MS022445 vs. ExPASy Swiss-Prot
Match: Q5ZIR9 (E3 ubiquitin-protein ligase RNF185 OS=Gallus gallus OX=9031 GN=RNF185 PE=2 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 6.4e-19
Identity = 45/92 (48.91%), Postives = 58/92 (63.04%), Query Frame = 0


Query: 43  FDCNICLETVKDPVVTLCGHLFCWPCIYKWLHFQDSSTEKQGQQPQQCPVCKAEVSDATL 102
           F+CNICL+T KD V++LCGHLFCWPC+++WL  + +         Q CPVCKA +S   +
Sbjct: 39  FECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNR--------QVCPVCKAGISRDKV 98

Query: 103 VPLYGKGET--QDPFESKNSQLGVVVPRRPQG 133
           +PLYG+G T  QDP E          P RPQG
Sbjct: 99  IPLYGRGSTGQQDPREK--------TPPRPQG 114

[Close]

BLAST of MS022445 vs. ExPASy TrEMBL
Match: A0A6J1D3G6 (E3 ubiquitin-protein ligase RMA1H1-like OS=Momordica charantia OX=3673 GN=LOC111016683 PE=4 SV=1)

HSP 1 Score: 479.9 bits (1234), Expect = 5.8e-132
Identity = 229/231 (99.13%), Postives = 230/231 (99.57%), Query Frame = 0


Query: 1   MEQYFEEASLQINTFGENKSSLENWKSVLDAMAETHCDTSGLFDCNICLETVKDPVVTLC 60
           MEQYFEEASLQINTFGENKSSLENWKSVLDAMAETHCDTSGLFDCNICLETVKDPVVTLC
Sbjct: 3   MEQYFEEASLQINTFGENKSSLENWKSVLDAMAETHCDTSGLFDCNICLETVKDPVVTLC 62

Query: 61  GHLFCWPCIYKWLHFQDSSTEKQGQQPQQCPVCKAEVSDATLVPLYGKGETQDPFESKNS 120
           GHLFCWPCIYKWLHFQDSSTEKQGQQPQQCPVCKAEVSDATLVPLYGKGETQDPFESKNS
Sbjct: 63  GHLFCWPCIYKWLHFQDSSTEKQGQQPQQCPVCKAEVSDATLVPLYGKGETQDPFESKNS 122

Query: 121 QLGVVVPRRPQGPGCFETSRPTSHSAPQFRRGNSSDQSSNSYYAQMTGVFGEMIYARMFG 180
           QLGVVVPRRPQGPGC ETSRPTSHSAPQFRRGNSSDQSSN+YYAQMTGVFGEMIYARMFG
Sbjct: 123 QLGVVVPRRPQGPGCSETSRPTSHSAPQFRRGNSSDQSSNNYYAQMTGVFGEMIYARMFG 182

Query: 181 AITNHYAYPNSYPLVWSSSPRIRRHILATDESLNRICIFLFCFSIICLLLF 232
           AITNHYAYPNSYPLVWSSSPRIRRHILATDESLNRICIFLFCFSIICLLLF
Sbjct: 183 AITNHYAYPNSYPLVWSSSPRIRRHILATDESLNRICIFLFCFSIICLLLF 233

[Close]

BLAST of MS022445 vs. ExPASy TrEMBL
Match: A0A6J1JKZ9 (E3 ubiquitin-protein ligase RMA1H1-like OS=Cucurbita maxima OX=3661 GN=LOC111486145 PE=4 SV=1)

HSP 1 Score: 407.5 bits (1046), Expect = 3.7e-110
Identity = 200/231 (86.58%), Postives = 210/231 (90.91%), Query Frame = 0


Query: 1   MEQYFEEASLQINTFGENKSSLENWKSVLDAMAETHCDTSGLFDCNICLETVKDPVVTLC 60
           MEQYFEE    IN+FGENKSS+ENWKS LDAMAET CD+SGLFDCNICLETVKDPVVTLC
Sbjct: 3   MEQYFEE----INSFGENKSSVENWKSALDAMAETQCDSSGLFDCNICLETVKDPVVTLC 62

Query: 61  GHLFCWPCIYKWLHFQDSSTEKQGQQPQQCPVCKAEVSDATLVPLYGKGETQDPFESKNS 120
           GHLFCWPCIYKWLHFQDSSTEKQGQ+ QQCPVCKAEVSDATLVPLYGKGETQDPFESKNS
Sbjct: 63  GHLFCWPCIYKWLHFQDSSTEKQGQRLQQCPVCKAEVSDATLVPLYGKGETQDPFESKNS 122

Query: 121 QLGVVVPRRPQGPGCFETSRPTSHSAPQFRRGNSSDQSSNSYYAQMTGVFGEMIYARMFG 180
           QLG+VVPRRPQGP CFE+ R TSH   QF++GN SDQ SN YYA+  GVFGEM+YARMFG
Sbjct: 123 QLGIVVPRRPQGPACFESPRATSHPVLQFQQGNLSDQ-SNIYYAE--GVFGEMVYARMFG 182

Query: 181 AITNHYAYPNSYPLVWSSSPRIRRHILATDESLNRICIFLFCFSIICLLLF 232
           AITN YAYPNSYPLVWSSSPRIRRHIL TDESLNRICIFLFC SIICLLLF
Sbjct: 183 AITNLYAYPNSYPLVWSSSPRIRRHILQTDESLNRICIFLFCCSIICLLLF 226

[Close]

BLAST of MS022445 vs. ExPASy TrEMBL
Match: A0A1S3C1W7 (E3 ubiquitin-protein ligase RMA1H1 OS=Cucumis melo OX=3656 GN=LOC103495518 PE=4 SV=1)

HSP 1 Score: 407.1 bits (1045), Expect = 4.8e-110
Identity = 197/237 (83.12%), Postives = 209/237 (88.19%), Query Frame = 0


Query: 1   MEQYFEEASLQINTFGENKSSLENWKSVLDAMAETHCDTSGLFDCNICLETVKDPVVTLC 60
           MEQYFEEAS+QIN+FGENKSSLENWKSVLDAMAETHCD SGLFDCNICLETVKDPVVTLC
Sbjct: 3   MEQYFEEASIQINSFGENKSSLENWKSVLDAMAETHCDASGLFDCNICLETVKDPVVTLC 62

Query: 61  GHLFCWPCIYKWLHFQDSSTEKQGQQPQQCPVCKAEVSDATLVPLYGKGETQDPFESKNS 120
           GHLFCWPCIYKW+HFQDSS EKQ ++  QCPVCKAEVSDATLVPLYGKGETQ+P ESKN 
Sbjct: 63  GHLFCWPCIYKWIHFQDSSLEKQARRLPQCPVCKAEVSDATLVPLYGKGETQNPLESKNP 122

Query: 121 QLGVVVPRRPQGPGCFETSRPTSHS-----APQFRRGNS-SDQSSNSYYAQMTGVFGEMI 180
           QLG+VVPRRPQGP CFE+ RPTSH       PQFR G+S S   SN YYAQ+TG FGE++
Sbjct: 123 QLGIVVPRRPQGPACFESPRPTSHPTSHTVGPQFREGSSDSSDQSNVYYAQVTGAFGEVV 182

Query: 181 YARMFGAITNHYAYPNSYPLVWSSSPRIRRHILATDESLNRICIFLFCFSIICLLLF 232
           YARM GAITN YAYPNSYPLVWSSSPRIRRHIL TDESLNRICIFLFC  IICLLLF
Sbjct: 183 YARMSGAITNLYAYPNSYPLVWSSSPRIRRHILQTDESLNRICIFLFCCLIICLLLF 239

[Close]

BLAST of MS022445 vs. ExPASy TrEMBL
Match: A0A5A7SLT9 (E3 ubiquitin-protein ligase RMA1H1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003470 PE=4 SV=1)

HSP 1 Score: 407.1 bits (1045), Expect = 4.8e-110
Identity = 197/237 (83.12%), Postives = 209/237 (88.19%), Query Frame = 0


Query: 1   MEQYFEEASLQINTFGENKSSLENWKSVLDAMAETHCDTSGLFDCNICLETVKDPVVTLC 60
           MEQYFEEAS+QIN+FGENKSSLENWKSVLDAMAETHCD SGLFDCNICLETVKDPVVTLC
Sbjct: 3   MEQYFEEASIQINSFGENKSSLENWKSVLDAMAETHCDASGLFDCNICLETVKDPVVTLC 62

Query: 61  GHLFCWPCIYKWLHFQDSSTEKQGQQPQQCPVCKAEVSDATLVPLYGKGETQDPFESKNS 120
           GHLFCWPCIYKW+HFQDSS EKQ ++  QCPVCKAEVSDATLVPLYGKGETQ+P ESKN 
Sbjct: 63  GHLFCWPCIYKWIHFQDSSLEKQARRLPQCPVCKAEVSDATLVPLYGKGETQNPLESKNP 122

Query: 121 QLGVVVPRRPQGPGCFETSRPTSHS-----APQFRRGNS-SDQSSNSYYAQMTGVFGEMI 180
           QLG+VVPRRPQGP CFE+ RPTSH       PQFR G+S S   SN YYAQ+TG FGE++
Sbjct: 123 QLGIVVPRRPQGPACFESPRPTSHPTSHTVGPQFREGSSDSSDQSNVYYAQVTGAFGEVV 182

Query: 181 YARMFGAITNHYAYPNSYPLVWSSSPRIRRHILATDESLNRICIFLFCFSIICLLLF 232
           YARM GAITN YAYPNSYPLVWSSSPRIRRHIL TDESLNRICIFLFC  IICLLLF
Sbjct: 183 YARMSGAITNLYAYPNSYPLVWSSSPRIRRHILQTDESLNRICIFLFCCLIICLLLF 239

[Close]

BLAST of MS022445 vs. ExPASy TrEMBL
Match: A0A6J1ERI0 (E3 ubiquitin-protein ligase RMA1H1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111437136 PE=4 SV=1)

HSP 1 Score: 401.0 bits (1029), Expect = 3.4e-108
Identity = 199/239 (83.26%), Postives = 211/239 (88.28%), Query Frame = 0


Query: 1   MEQYFEEASLQINTFGENKSSLENWKSVLDAMAETHCDTSGLFDCNICLETVKDPVVTLC 60
           MEQY+EE    IN+FGENKSS+ENWKS LDAMAET CD+SGLFDCNICLETVKDPVVTLC
Sbjct: 3   MEQYYEE----INSFGENKSSVENWKSALDAMAETQCDSSGLFDCNICLETVKDPVVTLC 62

Query: 61  GHLFCWPCIYKWLHFQDSSTEKQGQQPQQCPVCKAEVSDATLVPLYGKGETQDPFESKNS 120
           GHLFCWPCIYKWLHFQDSSTEKQGQ+ QQCPVCKAEVSDATLVPLYGKGETQDPFESKNS
Sbjct: 63  GHLFCWPCIYKWLHFQDSSTEKQGQRLQQCPVCKAEVSDATLVPLYGKGETQDPFESKNS 122

Query: 121 QLGVVVPRRPQGPGCFETSRPTSHSAP--------QFRRGNSSDQSSNSYYAQMTGVFGE 180
           QLG+VVPRRPQGP CFE+ R TSH  P        QF++GN SDQ SN YYA+  GVFGE
Sbjct: 123 QLGIVVPRRPQGPACFESPRATSHPHPHPHPHPVLQFQQGNLSDQ-SNIYYAE--GVFGE 182

Query: 181 MIYARMFGAITNHYAYPNSYPLVWSSSPRIRRHILATDESLNRICIFLFCFSIICLLLF 232
           M+YARMFGAITN Y+YPNSYPLVWSSSPRIRRHIL TDESLNRICIFLFC SIICLLLF
Sbjct: 183 MVYARMFGAITNLYSYPNSYPLVWSSSPRIRRHILQTDESLNRICIFLFCCSIICLLLF 234

[Close]

BLAST of MS022445 vs. TAIR 10
Match: AT4G03510.1 (RING membrane-anchor 1 )

HSP 1 Score: 173.3 bits (438), Expect = 2.2e-43
Identity = 104/253 (41.11%), Postives = 145/253 (57.31%), Query Frame = 0


Query: 1   MEQYFEEASLQINTFGENKSSLENWKSVLDAMAETHCDT-SGLFDCNICLETVKDPVVTL 60
           ++Q FE+A+L    +GE     ++ K     ++    DT    FDCNICL++V++PVVTL
Sbjct: 3   LDQSFEDAALLGELYGEGAFCFKSKKPEPITVSVPSDDTDDSNFDCNICLDSVQEPVVTL 62

Query: 61  CGHLFCWPCIYKWLHFQDSSTEKQGQQPQQCPVCKAEVSDATLVPLYGKGETQDPFESKN 120
           CGHLFCWPCI+KWL  Q  ST  + Q+ +QCPVCK++VS +TLVPLYG+G      E KN
Sbjct: 63  CGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCKSKVSHSTLVPLYGRGRCTTQEEGKN 122

Query: 121 SQLGVVVPRRPQGPGCFETSRPTS--------------HSAPQ---FRRGNSSDQSSNSY 180
           S     VP+RP GP  +    P S               ++PQ   +        +S SY
Sbjct: 123 S-----VPKRPVGP-VYRLEMPNSPYASTDLRLSQRVHFNSPQEGYYPVSGVMSSNSLSY 182

Query: 181 YAQMTGVF---GEMIYARMFGA-ITNHYAYPNSYPLVWSSSPRIRRHILATDESLNRICI 232
            A +  V    GEM+  R+FG  + + +AYP++Y L  +S PR+RR I+  D+SL RI  
Sbjct: 183 SAVLDPVMVMVGEMVATRLFGTRVMDRFAYPDTYNLAGTSGPRMRRRIMQADKSLGRIFF 242

[Close]

BLAST of MS022445 vs. TAIR 10
Match: AT4G03510.2 (RING membrane-anchor 1 )

HSP 1 Score: 173.3 bits (438), Expect = 2.2e-43
Identity = 104/253 (41.11%), Postives = 145/253 (57.31%), Query Frame = 0


Query: 1   MEQYFEEASLQINTFGENKSSLENWKSVLDAMAETHCDT-SGLFDCNICLETVKDPVVTL 60
           ++Q FE+A+L    +GE     ++ K     ++    DT    FDCNICL++V++PVVTL
Sbjct: 3   LDQSFEDAALLGELYGEGAFCFKSKKPEPITVSVPSDDTDDSNFDCNICLDSVQEPVVTL 62

Query: 61  CGHLFCWPCIYKWLHFQDSSTEKQGQQPQQCPVCKAEVSDATLVPLYGKGETQDPFESKN 120
           CGHLFCWPCI+KWL  Q  ST  + Q+ +QCPVCK++VS +TLVPLYG+G      E KN
Sbjct: 63  CGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCKSKVSHSTLVPLYGRGRCTTQEEGKN 122

Query: 121 SQLGVVVPRRPQGPGCFETSRPTS--------------HSAPQ---FRRGNSSDQSSNSY 180
           S     VP+RP GP  +    P S               ++PQ   +        +S SY
Sbjct: 123 S-----VPKRPVGP-VYRLEMPNSPYASTDLRLSQRVHFNSPQEGYYPVSGVMSSNSLSY 182

Query: 181 YAQMTGVF---GEMIYARMFGA-ITNHYAYPNSYPLVWSSSPRIRRHILATDESLNRICI 232
            A +  V    GEM+  R+FG  + + +AYP++Y L  +S PR+RR I+  D+SL RI  
Sbjct: 183 SAVLDPVMVMVGEMVATRLFGTRVMDRFAYPDTYNLAGTSGPRMRRRIMQADKSLGRIFF 242

[Close]

BLAST of MS022445 vs. TAIR 10
Match: AT4G27470.1 (RING membrane-anchor 3 )

HSP 1 Score: 147.1 bits (370), Expect = 1.7e-35
Identity = 86/217 (39.63%), Postives = 115/217 (53.00%), Query Frame = 0


Query: 40  SGLFDCNICLETVKDPVVTLCGHLFCWPCIYKWLHFQDSSTEKQGQQPQQCPVCKAEVSD 99
           SG FDCNICL+T  DPVVTLCGHLFCWPCIYKWLH Q SS     Q    CPVCK+ ++ 
Sbjct: 39  SGCFDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQLSSVSVD-QHQNNCPVCKSNITI 98

Query: 100 ATLVPLYGKG--ETQDPFESKNSQ-LGVVVPRRPQGPGC---------------FETSRP 159
            +LVPLYG+G       F SK    L   +PRRP                     +T  P
Sbjct: 99  TSLVPLYGRGMSSPSSTFGSKKQDALSTDIPRRPAPSALRNPITSASSLNPSLQHQTLSP 158

Query: 160 TSHSAPQFRRGNSSDQSSN-------SYYAQMTGVFGEMIYARMFGAITNHYAYPNSYPL 219
           + H+     RG ++ +S++       S+   + G+FG+++Y R+FG  TN  A P     
Sbjct: 159 SFHNHQYSPRGFTTTESTDLANAVMMSFLYPVIGMFGDLVYTRIFGTFTNTIAQPYQ--- 218

Query: 220 VWSSSPRIRRHILATDESLNRICIFLFCFSIICLLLF 232
                    + ++  ++SLNR+ IF  C  I+CLLLF
Sbjct: 219 --------SQRMMQREKSLNRVSIFFLCCIILCLLLF 243

[Close]

BLAST of MS022445 vs. TAIR 10
Match: AT4G28270.1 (RING membrane-anchor 2 )

HSP 1 Score: 142.1 bits (357), Expect = 5.5e-34
Identity = 82/205 (40.00%), Postives = 115/205 (56.10%), Query Frame = 0


Query: 35  THCDTSGLFDCNICLETVKDPVVTLCGHLFCWPCIYKWLHFQDSSTEKQGQ-----QPQQ 94
           T  D+ G FDCNICL+ V+DPVVTLCGHLFCWPCI+KW +  ++S ++  Q     +P +
Sbjct: 11  TLVDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPK 70

Query: 95  CPVCKAEVSDATLVPLYGKGETQDPFESKNSQLGVVVPRRPQGPGCFETSRPTSHSAPQF 154
           CPVCK++VS+ATLVP+YG+G+       K  Q G  VP RP GP          +     
Sbjct: 71  CPVCKSDVSEATLVPIYGRGQ-------KAPQSGSNVPSRPTGP---------VYDLRGV 130

Query: 155 RRGNSSDQSSNSYYAQ---MTGVFGEMIYARMFGAITNHYAYPNSYPLVWSSSPRIRRHI 214
            +     +S    Y     + GV  EM+Y R+FG  +++ A           + R RR  
Sbjct: 131 GQRLGEGESQRYMYRMPDPVMGVVCEMVYRRLFGESSSNMAPYR------DMNVRSRRRA 190

Query: 215 LATDESLNRICIFLFCFSIICLLLF 232
           +  +ESL+R+ +FL CF  +CL LF
Sbjct: 191 MQAEESLSRVYLFLLCFMFMCLFLF 193

[Close]

BLAST of MS022445 vs. TAIR 10
Match: AT1G74990.1 (RING/U-box superfamily protein )

HSP 1 Score: 115.9 bits (289), Expect = 4.2e-26
Identity = 64/133 (48.12%), Postives = 77/133 (57.89%), Query Frame = 0


Query: 38  DTSGLFDCNICLETVKDPVVTLCGHLFCWPCIYKWLHFQDSSTEKQGQQPQQCPVCKAEV 97
           D S  F CNICLE  ++P+VTLCGHLFCWPC+YKWLH+   S          CPVCKA V
Sbjct: 12  DASNNFGCNICLELAREPIVTLCGHLFCWPCLYKWLHYHSKS--------NHCPVCKALV 71

Query: 98  SDATLVPLYGKGE-TQDPFESKNSQLGVVVPRRPQGPGCFETSRPTSHSAPQFRRGNSSD 157
            + TLVPLYG G+ + DP    NS  GV VP RP      ET+RP      Q   G+S  
Sbjct: 72  KEDTLVPLYGMGKPSSDPRSKLNS--GVTVPNRPAATRT-ETARP---RLEQRHHGSSFF 130

Query: 158 QSSNSYYAQMTGV 170
              +S+ A  TG+
Sbjct: 132 GGHSSFAAMPTGL 130

The following BLAST results are available for this feature:

BLAST of MS022445 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022147841.1	1.2e-131	99.13	E3 ubiquitin-protein ligase RMA1H1-like [Momordica charantia] >XP_022147842.1 E3...	[more]
XP_011658745.1	6.8e-111	83.54	E3 ubiquitin-protein ligase RMA1H1 [Cucumis sativus] >XP_031745015.1 E3 ubiquiti...	[more]
XP_038888270.1	5.8e-110	83.05	E3 ubiquitin-protein ligase RMA1H1 [Benincasa hispida]	[more]
XP_022988938.1	7.5e-110	86.58	E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita maxima] >XP_022988939.1 E3 ub...	[more]
XP_008455327.1	9.8e-110	83.12	PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Cucumis melo] >XP_008455328.1 PRE...	[more]

BLAST of MS022445 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6R567	1.3e-51	46.50	E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=...	[more]
O64425	3.1e-42	41.11	E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana OX=3702 GN=RMA1 PE=1 SV...	[more]
Q8GUK7	2.4e-34	39.63	E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV...	[more]
P93030	7.7e-33	40.00	E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana OX=3702 GN=RMA2 PE=1 SV...	[more]
Q5ZIR9	6.4e-19	48.91	E3 ubiquitin-protein ligase RNF185 OS=Gallus gallus OX=9031 GN=RNF185 PE=2 SV=1	[more]

BLAST of MS022445 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D3G6	5.8e-132	99.13	E3 ubiquitin-protein ligase RMA1H1-like OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A6J1JKZ9	3.7e-110	86.58	E3 ubiquitin-protein ligase RMA1H1-like OS=Cucurbita maxima OX=3661 GN=LOC111486...	[more]
A0A1S3C1W7	4.8e-110	83.12	E3 ubiquitin-protein ligase RMA1H1 OS=Cucumis melo OX=3656 GN=LOC103495518 PE=4 ...	[more]
A0A5A7SLT9	4.8e-110	83.12	E3 ubiquitin-protein ligase RMA1H1 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A6J1ERI0	3.4e-108	83.26	E3 ubiquitin-protein ligase RMA1H1-like isoform X1 OS=Cucurbita moschata OX=3662...	[more]

BLAST of MS022445 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G03510.1	2.2e-43	41.11	RING membrane-anchor 1	[more]
AT4G03510.2	2.2e-43	41.11	RING membrane-anchor 1	[more]
AT4G27470.1	1.7e-35	39.63	RING membrane-anchor 3	[more]
AT4G28270.1	5.5e-34	40.00	RING membrane-anchor 2	[more]
AT1G74990.1	4.2e-26	48.12	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 45..93 e-value: 1.2E-10 score: 51.3
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 45..94 score: 13.212175
IPR018957	Zinc finger, C3HC4 RING-type	PFAM	PF00097	zf-C3HC4	coord: 45..93 e-value: 8.8E-10 score: 38.3
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 4..110 e-value: 2.9E-18 score: 67.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 137..159
None	No IPR available	PANTHER	PTHR12313:SF59	E3 UBIQUITIN-PROTEIN LIGASE RMA1	coord: 2..231
None	No IPR available	CDD	cd16745	RING-HC_AtRMA_like	coord: 43..95 e-value: 3.29959E-25 score: 91.5967
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 38..99
IPR045103	E3 ubiquitin-protein ligase RNF5/RNF185-like	PANTHER	PTHR12313	E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED	coord: 2..231
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 60..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS022445.1	MS022445.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005783	endoplasmic reticulum
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0061630	ubiquitin protein ligase activity