MS022425 (gene) Bitter gourd (TR) v1

Overview


Name	MS022425
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Wound-responsive family protein
Location	scaffold47: 3252782 .. 3253030 (+)
RNA-Seq Expression	MS022425
Synteny	MS022425

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTTCGGCGGCAAAAGCTTGGGTGGTGGCGGCGAGCGTGGGAGTGGTGGAAGCGCTGAAGGACCAAGGGATATGCAGGTGGAATCACGCCATAAGATCGGCGCAGCAGTACGCCAAGAGCCGCGTCAGGTCTCTTTCTCAGGCCAAGAAGTTGTCGCCGTCGTCTTCCGCCGTCGTCTCCGGCCGCCACCACAATAAGTCGGAGGAATCTCTGAGAATGGTCATGTATTTAAGCTGCTGGGGTCCCAAT

mRNA sequence

AGTTCGGCGGCAAAAGCTTGGGTGGTGGCGGCGAGCGTGGGAGTGGTGGAAGCGCTGAAGGACCAAGGGATATGCAGGTGGAATCACGCCATAAGATCGGCGCAGCAGTACGCCAAGAGCCGCGTCAGGTCTCTTTCTCAGGCCAAGAAGTTGTCGCCGTCGTCTTCCGCCGTCGTCTCCGGCCGCCACCACAATAAGTCGGAGGAATCTCTGAGAATGGTCATGTATTTAAGCTGCTGGGGTCCCAAT

Coding sequence (CDS)

AGTTCGGCGGCAAAAGCTTGGGTGGTGGCGGCGAGCGTGGGAGTGGTGGAAGCGCTGAAGGACCAAGGGATATGCAGGTGGAATCACGCCATAAGATCGGCGCAGCAGTACGCCAAGAGCCGCGTCAGGTCTCTTTCTCAGGCCAAGAAGTTGTCGCCGTCGTCTTCCGCCGTCGTCTCCGGCCGCCACCACAATAAGTCGGAGGAATCTCTGAGAATGGTCATGTATTTAAGCTGCTGGGGTCCCAAT

Protein sequence

SSAAKAWVVAASVGVVEALKDQGICRWNHAIRSAQQYAKSRVRSLSQAKKLSPSSSAVVSGRHHNKSEESLRMVMYLSCWGPN

Homology

[Close]

BLAST of MS022425 vs. NCBI nr
Match: XP_022136121.1 (uncharacterized protein LOC111007890 [Momordica charantia])

HSP 1 Score: 161.4 bits (407), Expect = 3.4e-36
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 1  SSAAKAWVVAASVGVVEALKDQGICRWNHAIRSAQQYAKSRVRSLSQAKKLSPSSSAVVS 60
          SSAAKAWVVAASVGVVEALKDQGICRWNHAIRSAQQYAKSRVR LSQAKKLSPSSSAVVS
Sbjct: 2  SSAAKAWVVAASVGVVEALKDQGICRWNHAIRSAQQYAKSRVRPLSQAKKLSPSSSAVVS 61

Query: 61 GRHHNKSEESLRMVMYLSCWGPN 84
          GRHHNKSEESLRMVMYLSCWGPN
Sbjct: 62 GRHHNKSEESLRMVMYLSCWGPN 84

[Close]

BLAST of MS022425 vs. NCBI nr
Match: XP_022952158.1 (uncharacterized protein LOC111454919 [Cucurbita moschata])

HSP 1 Score: 126.3 bits (316), Expect = 1.2e-25
Identity = 63/83 (75.90%), Postives = 72/83 (86.75%), Query Frame = 0


Query: 1  SSAAKAWVVAASVGVVEALKDQGICRWNHAIRSAQQYAKSRVRSLSQAKKLSPSSSAVVS 60
          SS+ +AWVVAASVGVVEALKDQG+CRWNHAI+S QQYAK+ VRS+SQAKKLS  S+A VS
Sbjct: 2  SSSRRAWVVAASVGVVEALKDQGVCRWNHAIKSVQQYAKNHVRSVSQAKKLSSPSTAAVS 61

Query: 61 GRHHNKSEESLRMVMYLSCWGPN 84
           +   +SEESLR VMYLSCWGPN
Sbjct: 62 DQKWKQSEESLRTVMYLSCWGPN 84

[Close]

BLAST of MS022425 vs. NCBI nr
Match: XP_022969311.1 (uncharacterized protein LOC111468355 [Cucurbita maxima])

HSP 1 Score: 125.6 bits (314), Expect = 2.1e-25
Identity = 62/83 (74.70%), Postives = 72/83 (86.75%), Query Frame = 0


Query: 1  SSAAKAWVVAASVGVVEALKDQGICRWNHAIRSAQQYAKSRVRSLSQAKKLSPSSSAVVS 60
          SS+ +AWVVAASVGVVEALKDQG+CRWNH I+S QQYAK+ VRS+SQAKKLS +S+A VS
Sbjct: 2  SSSRRAWVVAASVGVVEALKDQGVCRWNHTIKSVQQYAKNHVRSVSQAKKLSSTSTAAVS 61

Query: 61 GRHHNKSEESLRMVMYLSCWGPN 84
           +   +SEESLR VMYLSCWGPN
Sbjct: 62 DQKWKQSEESLRTVMYLSCWGPN 84

[Close]

BLAST of MS022425 vs. NCBI nr
Match: XP_004136809.1 (uncharacterized protein LOC101202743 [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 2.1e-25
Identity = 64/83 (77.11%), Postives = 68/83 (81.93%), Query Frame = 0


Query: 1  SSAAKAWVVAASVGVVEALKDQGICRWNHAIRSAQQYAKSRVRSLSQAKKLSPSSSAVVS 60
          S   K WVVAASVGVVEALKDQGICRWNH IRS QQYAK+ VRS+SQAKKLS  S+A VS
Sbjct: 2  SCCRKGWVVAASVGVVEALKDQGICRWNHTIRSLQQYAKNHVRSISQAKKLSSPSAAAVS 61

Query: 61 GRHHNKSEESLRMVMYLSCWGPN 84
              N+SEESLR VMYLSCWGPN
Sbjct: 62 DHKWNQSEESLRTVMYLSCWGPN 84

[Close]

BLAST of MS022425 vs. NCBI nr
Match: XP_023554652.1 (uncharacterized protein LOC111811840 [Cucurbita pepo subsp. pepo] >KAG6572338.1 hypothetical protein SDJN03_29066, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011949.1 hypothetical protein SDJN02_26857, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 124.8 bits (312), Expect = 3.5e-25
Identity = 62/83 (74.70%), Postives = 71/83 (85.54%), Query Frame = 0


Query: 1  SSAAKAWVVAASVGVVEALKDQGICRWNHAIRSAQQYAKSRVRSLSQAKKLSPSSSAVVS 60
          SS+ +AWVVAASVGVVEALKDQG+CRWNH I+S QQYAK+ VRS+SQAKKLS  S+A VS
Sbjct: 2  SSSRRAWVVAASVGVVEALKDQGVCRWNHTIKSVQQYAKNHVRSVSQAKKLSSPSTAAVS 61

Query: 61 GRHHNKSEESLRMVMYLSCWGPN 84
           +   +SEESLR VMYLSCWGPN
Sbjct: 62 DQKWKQSEESLRTVMYLSCWGPN 84

[Close]

BLAST of MS022425 vs. ExPASy TrEMBL
Match: A0A6J1C2M5 (uncharacterized protein LOC111007890 OS=Momordica charantia OX=3673 GN=LOC111007890 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.6e-36
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 1  SSAAKAWVVAASVGVVEALKDQGICRWNHAIRSAQQYAKSRVRSLSQAKKLSPSSSAVVS 60
          SSAAKAWVVAASVGVVEALKDQGICRWNHAIRSAQQYAKSRVR LSQAKKLSPSSSAVVS
Sbjct: 2  SSAAKAWVVAASVGVVEALKDQGICRWNHAIRSAQQYAKSRVRPLSQAKKLSPSSSAVVS 61

Query: 61 GRHHNKSEESLRMVMYLSCWGPN 84
          GRHHNKSEESLRMVMYLSCWGPN
Sbjct: 62 GRHHNKSEESLRMVMYLSCWGPN 84

[Close]

BLAST of MS022425 vs. ExPASy TrEMBL
Match: A0A6J1GJQ8 (uncharacterized protein LOC111454919 OS=Cucurbita moschata OX=3662 GN=LOC111454919 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 5.8e-26
Identity = 63/83 (75.90%), Postives = 72/83 (86.75%), Query Frame = 0


Query: 1  SSAAKAWVVAASVGVVEALKDQGICRWNHAIRSAQQYAKSRVRSLSQAKKLSPSSSAVVS 60
          SS+ +AWVVAASVGVVEALKDQG+CRWNHAI+S QQYAK+ VRS+SQAKKLS  S+A VS
Sbjct: 2  SSSRRAWVVAASVGVVEALKDQGVCRWNHAIKSVQQYAKNHVRSVSQAKKLSSPSTAAVS 61

Query: 61 GRHHNKSEESLRMVMYLSCWGPN 84
           +   +SEESLR VMYLSCWGPN
Sbjct: 62 DQKWKQSEESLRTVMYLSCWGPN 84

[Close]

BLAST of MS022425 vs. ExPASy TrEMBL
Match: A0A6J1HXF9 (uncharacterized protein LOC111468355 OS=Cucurbita maxima OX=3661 GN=LOC111468355 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.0e-25
Identity = 62/83 (74.70%), Postives = 72/83 (86.75%), Query Frame = 0


Query: 1  SSAAKAWVVAASVGVVEALKDQGICRWNHAIRSAQQYAKSRVRSLSQAKKLSPSSSAVVS 60
          SS+ +AWVVAASVGVVEALKDQG+CRWNH I+S QQYAK+ VRS+SQAKKLS +S+A VS
Sbjct: 2  SSSRRAWVVAASVGVVEALKDQGVCRWNHTIKSVQQYAKNHVRSVSQAKKLSSTSTAAVS 61

Query: 61 GRHHNKSEESLRMVMYLSCWGPN 84
           +   +SEESLR VMYLSCWGPN
Sbjct: 62 DQKWKQSEESLRTVMYLSCWGPN 84

[Close]

BLAST of MS022425 vs. ExPASy TrEMBL
Match: A0A0A0K3P5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G046670 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.0e-25
Identity = 64/83 (77.11%), Postives = 68/83 (81.93%), Query Frame = 0


Query: 1  SSAAKAWVVAASVGVVEALKDQGICRWNHAIRSAQQYAKSRVRSLSQAKKLSPSSSAVVS 60
          S   K WVVAASVGVVEALKDQGICRWNH IRS QQYAK+ VRS+SQAKKLS  S+A VS
Sbjct: 2  SCCRKGWVVAASVGVVEALKDQGICRWNHTIRSLQQYAKNHVRSISQAKKLSSPSAAAVS 61

Query: 61 GRHHNKSEESLRMVMYLSCWGPN 84
              N+SEESLR VMYLSCWGPN
Sbjct: 62 DHKWNQSEESLRTVMYLSCWGPN 84

[Close]

BLAST of MS022425 vs. ExPASy TrEMBL
Match: A0A6J1D1Q0 (uncharacterized protein LOC111016790 OS=Momordica charantia OX=3673 GN=LOC111016790 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.7e-25
Identity = 68/85 (80.00%), Postives = 74/85 (87.06%), Query Frame = 0


Query: 1  SSAAKAWVVAASVGVVEALKDQGICRWNHAIRSAQQYAKSRVRSLSQAKKL-SPSSSAV- 60
          SS  + WVVAASVGVVEALKDQGICRWNHAIRSAQQYAKS VRS+SQAKKL SPS++AV 
Sbjct: 2  SSGRRGWVVAASVGVVEALKDQGICRWNHAIRSAQQYAKSHVRSVSQAKKLSSPSAAAVS 61

Query: 61 VSGRHHNKSEESLRMVMYLSCWGPN 84
          VS +   +SEESLR VMYLSCWGPN
Sbjct: 62 VSDKKLKQSEESLRTVMYLSCWGPN 86

[Close]

BLAST of MS022425 vs. TAIR 10
Match: AT4G10265.1 (Wound-responsive family protein )

HSP 1 Score: 100.9 bits (250), Expect = 5.1e-22
Identity = 53/84 (63.10%), Postives = 67/84 (79.76%), Query Frame = 0


Query: 1  SSAAKAWVVAASVGVVEALKDQ-GICRWNHAIRSAQQYAKSRVRSLSQAKKLSPSSSAVV 60
          SSA+K W+VAAS+G VEALKDQ G+CRWN+ IRSA QY ++ +RS+SQAKKL  SSS++ 
Sbjct: 2  SSASKTWMVAASIGAVEALKDQLGVCRWNYVIRSANQYLRNNLRSVSQAKKL--SSSSID 61

Query: 61 SGRHHNKSEESLRMVMYLSCWGPN 84
                ++EESLR VMYLSCWGP+
Sbjct: 62 YTNKTKQAEESLRTVMYLSCWGPS 83

[Close]

BLAST of MS022425 vs. TAIR 10
Match: AT4G10270.1 (Wound-responsive family protein )

HSP 1 Score: 95.1 bits (235), Expect = 2.8e-20
Identity = 52/89 (58.43%), Postives = 65/89 (73.03%), Query Frame = 0


Query: 1  SSAAKAWVVAASVGVVEALKDQ-GICRWNHAIRSAQQYAKSRVRSLSQAKKLSPSS-SAV 60
          SS +KAW VA S+G VEALKDQ G+CRWN+ +RS  Q+ ++ VRS+SQ K+ S SS SA 
Sbjct: 2  SSTSKAWTVAVSIGAVEALKDQLGLCRWNYILRSVNQHLRNNVRSVSQGKRFSSSSVSAA 61

Query: 61 VSGRHHN----KSEESLRMVMYLSCWGPN 84
          V+    +    K+EESLR VMYLSCWGPN
Sbjct: 62 VTSSGESEKAKKAEESLRTVMYLSCWGPN 90

[Close]

BLAST of MS022425 vs. TAIR 10
Match: AT4G33560.1 (Wound-responsive family protein )

HSP 1 Score: 55.8 bits (133), Expect = 1.9e-08
Identity = 34/83 (40.96%), Postives = 47/83 (56.63%), Query Frame = 0


Query: 6  AWVVAASVGVVEALKDQGICRWNHAIRSAQQYAKSRVRSLSQAKKLSP--SSSAVVSGRH 65
          +W VA ++  VE LKDQG+ RWN+  R   + A +RVR+++   + SP  SSS+  S R 
Sbjct: 8  SWAVATAIAAVEVLKDQGVARWNYLFRLLHKEAMARVRTITVPSRPSPPTSSSSATSIRS 67

Query: 66 HNKS----EESLRMVMYLSCWGP 83
             S    E S    M LSC+GP
Sbjct: 68 KPLSTTPFETSFEKAMGLSCFGP 90

[Close]

BLAST of MS022425 vs. TAIR 10
Match: AT2G14070.1 (wound-responsive protein-related )

HSP 1 Score: 40.8 bits (94), Expect = 6.2e-04
Identity = 30/90 (33.33%), Postives = 47/90 (52.22%), Query Frame = 0


Query: 1   SSAAKAWVVAASVGVVEALKDQGICRWNHAIRSAQQYAKSRVRSL-------SQAKKLSP 60
           S+   +W+VA ++  VE        RWN+ +R   +  ++R+R++       S A   S 
Sbjct: 109 STRHTSWMVATAIAAVET-------RWNYPLRFFNKDVRARLRAIAVTSRPPSSASSSSS 168

Query: 61  SSSAVVSGRH-HNKSEESLRMVMYLSCWGP 83
           SS+ +V   H   KSE S+  VM LSC+GP
Sbjct: 169 SSADLVKENHPMPKSEASMERVMCLSCFGP 191

The following BLAST results are available for this feature:

BLAST of MS022425 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136121.1	3.4e-36	98.80	uncharacterized protein LOC111007890 [Momordica charantia]	[more]
XP_022952158.1	1.2e-25	75.90	uncharacterized protein LOC111454919 [Cucurbita moschata]	[more]
XP_022969311.1	2.1e-25	74.70	uncharacterized protein LOC111468355 [Cucurbita maxima]	[more]
XP_004136809.1	2.1e-25	77.11	uncharacterized protein LOC101202743 [Cucumis sativus]	[more]
XP_023554652.1	3.5e-25	74.70	uncharacterized protein LOC111811840 [Cucurbita pepo subsp. pepo] >KAG6572338.1 ...	[more]

BLAST of MS022425 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS022425 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C2M5	1.6e-36	98.80	uncharacterized protein LOC111007890 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A6J1GJQ8	5.8e-26	75.90	uncharacterized protein LOC111454919 OS=Cucurbita moschata OX=3662 GN=LOC1114549...	[more]
A0A6J1HXF9	1.0e-25	74.70	uncharacterized protein LOC111468355 OS=Cucurbita maxima OX=3661 GN=LOC111468355...	[more]
A0A0A0K3P5	1.0e-25	77.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G046670 PE=4 SV=1	[more]
A0A6J1D1Q0	1.7e-25	80.00	uncharacterized protein LOC111016790 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]

BLAST of MS022425 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G10265.1	5.1e-22	63.10	Wound-responsive family protein	[more]
AT4G10270.1	2.8e-20	58.43	Wound-responsive family protein	[more]
AT4G33560.1	1.9e-08	40.96	Wound-responsive family protein	[more]
AT2G14070.1	6.2e-04	33.33	wound-responsive protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022251	Protein of unknown function wound-induced	PFAM	PF12609	DUF3774	coord: 9..82 e-value: 2.8E-31 score: 108.4
IPR022251	Protein of unknown function wound-induced	PANTHER	PTHR33090	DUF3774 DOMAIN PROTEIN-RELATED	coord: 1..83
None	No IPR available	PANTHER	PTHR33090:SF56	WOUND-RESPONSIVE FAMILY PROTEIN	coord: 1..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS022425.1	MS022425.1	mRNA