MS022396 (gene) Bitter gourd (TR) v1

Overview


Name	MS022396
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Ubiquitin-like domain-containing protein
Location	scaffold47: 3044419 .. 3044760 (+)
RNA-Seq Expression	MS022396
Synteny	MS022396

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCTGGCGGTGGAAAACTTGACCGGTTCTCTGTTCCACATTCAGGTCAAAGACGACGCCACCGTGTCTGATCTTAAGGCCGAGATCAGTGCCCACCACAACAACGACCTCCCTTCTGACCGTCTGATCTTCATCGCCGACGACAACCCTGGCCGACCGATCAGTAAGGACGATGATGGATTCTCGCTCGTTGATTGTGGCGTCAAAGATGGGTCCCACATTTATATCTTTTTCCATCCGCTTGATCATGAAGATGATCGTGATCATGGCGGTGATGATCCTGATCAGGATCATCACTCTCGCCTCTTCTTCTTTACGTGTCACAATATTCTTCTCTTC

mRNA sequence

ATGAAGCTGGCGGTGGAAAACTTGACCGGTTCTCTGTTCCACATTCAGGTCAAAGACGACGCCACCGTGTCTGATCTTAAGGCCGAGATCAGTGCCCACCACAACAACGACCTCCCTTCTGACCGTCTGATCTTCATCGCCGACGACAACCCTGGCCGACCGATCAGTAAGGACGATGATGGATTCTCGCTCGTTGATTGTGGCGTCAAAGATGGGTCCCACATTTATATCTTTTTCCATCCGCTTGATCATGAAGATGATCGTGATCATGGCGGTGATGATCCTGATCAGGATCATCACTCTCGCCTCTTCTTCTTTACGTGTCACAATATTCTTCTCTTC

Coding sequence (CDS)

ATGAAGCTGGCGGTGGAAAACTTGACCGGTTCTCTGTTCCACATTCAGGTCAAAGACGACGCCACCGTGTCTGATCTTAAGGCCGAGATCAGTGCCCACCACAACAACGACCTCCCTTCTGACCGTCTGATCTTCATCGCCGACGACAACCCTGGCCGACCGATCAGTAAGGACGATGATGGATTCTCGCTCGTTGATTGTGGCGTCAAAGATGGGTCCCACATTTATATCTTTTTCCATCCGCTTGATCATGAAGATGATCGTGATCATGGCGGTGATGATCCTGATCAGGATCATCACTCTCGCCTCTTCTTCTTTACGTGTCACAATATTCTTCTCTTC

Protein sequence

MKLAVENLTGSLFHIQVKDDATVSDLKAEISAHHNNDLPSDRLIFIADDNPGRPISKDDDGFSLVDCGVKDGSHIYIFFHPLDHEDDRDHGGDDPDQDHHSRLFFFTCHNILLF

Homology

[Close]

BLAST of MS022396 vs. NCBI nr
Match: XP_022136124.1 (uncharacterized protein LOC111007894 [Momordica charantia])

HSP 1 Score: 242.3 bits (617), Expect = 2.1e-60
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MKLAVENLTGSLFHIQVKDDATVSDLKAEISAHHNNDLPSDRLIFIADDNPGRPISKDDD 60
           MKLAVENLTGSLFHIQVKDDATVSDLKAEISAHHNNDLPSDRLIFIADDNPGRPISKDDD
Sbjct: 1   MKLAVENLTGSLFHIQVKDDATVSDLKAEISAHHNNDLPSDRLIFIADDNPGRPISKDDD 60

Query: 61  GFSLVDCGVKDGSHIYIFFHPLDHEDDRDHGGDDPDQDHHSRLFFFTCHNILLF 115
           GFSLVDCGVKDGSHIYIFFHPLDHEDDRDHGGDDPDQDHHSRLFFFTCHNILLF
Sbjct: 61  GFSLVDCGVKDGSHIYIFFHPLDHEDDRDHGGDDPDQDHHSRLFFFTCHNILLF 114

[Close]

BLAST of MS022396 vs. NCBI nr
Match: KGN43536.1 (hypothetical protein Csa_020453 [Cucumis sativus])

HSP 1 Score: 124.8 bits (312), Expect = 4.8e-25
Identity = 69/114 (60.53%), Postives = 84/114 (73.68%), Query Frame = 0


Query: 1   MKLAVENLTGSLFHIQVKDDATVSDLKAEISAH-HNNDLPSDRLIFIADDNPGRPISKDD 60
           MKL V+NLTGSLF ++V+DDATVSDL+ +I+AH H ++LPS RLIFI D NP R IS+ D
Sbjct: 1   MKLVVQNLTGSLFFVEVEDDATVSDLRTQINAHPHQHNLPSHRLIFIPDHNPERLISQVD 60

Query: 61  DGFSLVDCGVKDGSHIYIFFHPLDHEDDRDHGGDDPDQDHHSRLFFFTCHNILL 114
           DG SLVD G++DGSHIYIFF PL H+DD D        D  +R FFFT  + LL
Sbjct: 61  DGISLVDFGLRDGSHIYIFFSPL-HDDDGD--------DIEARRFFFTSSSDLL 105

[Close]

BLAST of MS022396 vs. NCBI nr
Match: XP_022989504.1 (uncharacterized protein LOC111486561 [Cucurbita maxima])

HSP 1 Score: 115.9 bits (289), Expect = 2.2e-22
Identity = 65/114 (57.02%), Postives = 79/114 (69.30%), Query Frame = 0


Query: 1   MKLAVENLTGSLFHIQVKDDATVSDLKAEISAHHNNDLPSDRLIFIADDNPGRPISKDDD 60
           MKL  ENLTGSLF+++V D ATV DL+ EIS+  +  LPSDRL+F+ D + GR IS  DD
Sbjct: 1   MKLVAENLTGSLFYVEVDDGATVLDLRTEISSQQS--LPSDRLLFVPDHDRGRLISVADD 60

Query: 61  GFSLVDCGVKDGSHIYIFFHPLDHEDDRDHGGDDPDQDHHSRLFFFTCHNILLF 115
           G SLVD G++DGS IYIFF PLD     D GGDD D    +R  FF C ++LLF
Sbjct: 61  GISLVDFGLRDGSLIYIFFCPLD-----DDGGDDVD----ARQLFFNCPDLLLF 103

[Close]

BLAST of MS022396 vs. NCBI nr
Match: KAG6589175.1 (hypothetical protein SDJN03_17740, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 111.7 bits (278), Expect = 4.2e-21
Identity = 63/114 (55.26%), Postives = 78/114 (68.42%), Query Frame = 0


Query: 1   MKLAVENLTGSLFHIQVKDDATVSDLKAEISAHHNNDLPSDRLIFIADDNPGRPISKDDD 60
           MKL  ENLTGSLF+++V D ATV DL+ EIS+  +  LPSDRL+F+ D + GR IS  DD
Sbjct: 1   MKLVAENLTGSLFYVEVDDGATVLDLRTEISSQQS--LPSDRLLFVPDHDRGRLISAADD 60

Query: 61  GFSLVDCGVKDGSHIYIFFHPLDHEDDRDHGGDDPDQDHHSRLFFFTCHNILLF 115
           G SLVD G++DGS IY+FF PLD     D G DD D    +R  FF C ++LLF
Sbjct: 61  GTSLVDFGLRDGSLIYVFFCPLD-----DEGVDDLD----ARQLFFNCPDLLLF 103

[Close]

BLAST of MS022396 vs. NCBI nr
Match: XP_022930696.1 (uncharacterized protein LOC111437093 [Cucurbita moschata])

HSP 1 Score: 111.3 bits (277), Expect = 5.5e-21
Identity = 63/114 (55.26%), Postives = 78/114 (68.42%), Query Frame = 0


Query: 1   MKLAVENLTGSLFHIQVKDDATVSDLKAEISAHHNNDLPSDRLIFIADDNPGRPISKDDD 60
           MKL  ENLTGSLF+++V D ATV DL+ EIS+  +  LPSDRL+F+ D + GR IS  DD
Sbjct: 1   MKLVAENLTGSLFYVEVDDGATVLDLRTEISSQQS--LPSDRLLFVPDHDRGRLISAADD 60

Query: 61  GFSLVDCGVKDGSHIYIFFHPLDHEDDRDHGGDDPDQDHHSRLFFFTCHNILLF 115
           G SLVD G++DGS IY+FF PLD E     G DD D    +R  FF C ++LLF
Sbjct: 61  GTSLVDFGLRDGSLIYVFFCPLDEE-----GVDDLD----ARQLFFNCPDLLLF 103

[Close]

BLAST of MS022396 vs. ExPASy TrEMBL
Match: A0A6J1C3E5 (uncharacterized protein LOC111007894 OS=Momordica charantia OX=3673 GN=LOC111007894 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.0e-60
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MKLAVENLTGSLFHIQVKDDATVSDLKAEISAHHNNDLPSDRLIFIADDNPGRPISKDDD 60
           MKLAVENLTGSLFHIQVKDDATVSDLKAEISAHHNNDLPSDRLIFIADDNPGRPISKDDD
Sbjct: 1   MKLAVENLTGSLFHIQVKDDATVSDLKAEISAHHNNDLPSDRLIFIADDNPGRPISKDDD 60

Query: 61  GFSLVDCGVKDGSHIYIFFHPLDHEDDRDHGGDDPDQDHHSRLFFFTCHNILLF 115
           GFSLVDCGVKDGSHIYIFFHPLDHEDDRDHGGDDPDQDHHSRLFFFTCHNILLF
Sbjct: 61  GFSLVDCGVKDGSHIYIFFHPLDHEDDRDHGGDDPDQDHHSRLFFFTCHNILLF 114

[Close]

BLAST of MS022396 vs. ExPASy TrEMBL
Match: A0A0A0K6V6 (Ubiquitin-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G044270 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 2.3e-25
Identity = 69/114 (60.53%), Postives = 84/114 (73.68%), Query Frame = 0


Query: 1   MKLAVENLTGSLFHIQVKDDATVSDLKAEISAH-HNNDLPSDRLIFIADDNPGRPISKDD 60
           MKL V+NLTGSLF ++V+DDATVSDL+ +I+AH H ++LPS RLIFI D NP R IS+ D
Sbjct: 1   MKLVVQNLTGSLFFVEVEDDATVSDLRTQINAHPHQHNLPSHRLIFIPDHNPERLISQVD 60

Query: 61  DGFSLVDCGVKDGSHIYIFFHPLDHEDDRDHGGDDPDQDHHSRLFFFTCHNILL 114
           DG SLVD G++DGSHIYIFF PL H+DD D        D  +R FFFT  + LL
Sbjct: 61  DGISLVDFGLRDGSHIYIFFSPL-HDDDGD--------DIEARRFFFTSSSDLL 105

[Close]

BLAST of MS022396 vs. ExPASy TrEMBL
Match: A0A6J1JPI4 (uncharacterized protein LOC111486561 OS=Cucurbita maxima OX=3661 GN=LOC111486561 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.1e-22
Identity = 65/114 (57.02%), Postives = 79/114 (69.30%), Query Frame = 0


Query: 1   MKLAVENLTGSLFHIQVKDDATVSDLKAEISAHHNNDLPSDRLIFIADDNPGRPISKDDD 60
           MKL  ENLTGSLF+++V D ATV DL+ EIS+  +  LPSDRL+F+ D + GR IS  DD
Sbjct: 1   MKLVAENLTGSLFYVEVDDGATVLDLRTEISSQQS--LPSDRLLFVPDHDRGRLISVADD 60

Query: 61  GFSLVDCGVKDGSHIYIFFHPLDHEDDRDHGGDDPDQDHHSRLFFFTCHNILLF 115
           G SLVD G++DGS IYIFF PLD     D GGDD D    +R  FF C ++LLF
Sbjct: 61  GISLVDFGLRDGSLIYIFFCPLD-----DDGGDDVD----ARQLFFNCPDLLLF 103

[Close]

BLAST of MS022396 vs. ExPASy TrEMBL
Match: A0A6J1ERN4 (uncharacterized protein LOC111437093 OS=Cucurbita moschata OX=3662 GN=LOC111437093 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.7e-21
Identity = 63/114 (55.26%), Postives = 78/114 (68.42%), Query Frame = 0


Query: 1   MKLAVENLTGSLFHIQVKDDATVSDLKAEISAHHNNDLPSDRLIFIADDNPGRPISKDDD 60
           MKL  ENLTGSLF+++V D ATV DL+ EIS+  +  LPSDRL+F+ D + GR IS  DD
Sbjct: 1   MKLVAENLTGSLFYVEVDDGATVLDLRTEISSQQS--LPSDRLLFVPDHDRGRLISAADD 60

Query: 61  GFSLVDCGVKDGSHIYIFFHPLDHEDDRDHGGDDPDQDHHSRLFFFTCHNILLF 115
           G SLVD G++DGS IY+FF PLD E     G DD D    +R  FF C ++LLF
Sbjct: 61  GTSLVDFGLRDGSLIYVFFCPLDEE-----GVDDLD----ARQLFFNCPDLLLF 103

[Close]

BLAST of MS022396 vs. ExPASy TrEMBL
Match: A0A7N2MBI9 (Ubiquitin-like domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 3.9e-20
Identity = 53/83 (63.86%), Postives = 66/83 (79.52%), Query Frame = 0


Query: 1  MKLAVENLTGSLFHIQVKDDATVSDLKAEISAHHNNDLPSDRLIFIADDNPGRPISKDDD 60
          M++ VENLTG+LF+IQV +DAT++DLK EI A     LP DRLI I D+N GRP++   D
Sbjct: 1  MRVVVENLTGTLFYIQVGNDATLADLKREIEAQQK--LPCDRLILILDNNCGRPMNVYGD 60

Query: 61 GFSLVDCGVKDGSHIYIFFHPLD 84
          G SLVDCGV+DGSHIY+FF+PLD
Sbjct: 61 GISLVDCGVQDGSHIYLFFNPLD 81

[Close]

BLAST of MS022396 vs. TAIR 10
Match: AT2G32360.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 63.9 bits (154), Expect = 9.4e-11
Identity = 41/99 (41.41%), Postives = 58/99 (58.59%), Query Frame = 0


Query: 1  MKLAVENLTGSLFHIQVKDDATVSDLKAEISAHHNNDLPSDRLIF-IADDNPGRPISKDD 60
          MK++VE +TG+     V +DATV  +K +I+      LP  RLI  I D+   R + +D+
Sbjct: 1  MKVSVEIITGTFIDTDVSEDATVKQMKEKIAVEVK--LPVTRLILVIGDEETRRLVMEDE 60

Query: 61 DGFSLVDCGVKDGSHIYIFF-HP-LDHEDDRDHGGDDPD 97
          D   L D GV + SHIY+FF HP L  +++R  G DD D
Sbjct: 61 DDMMLRDLGVGEDSHIYLFFKHPDLVSKEERSKGEDDDD 97

The following BLAST results are available for this feature:

BLAST of MS022396 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136124.1	2.1e-60	100.00	uncharacterized protein LOC111007894 [Momordica charantia]	[more]
KGN43536.1	4.8e-25	60.53	hypothetical protein Csa_020453 [Cucumis sativus]	[more]
XP_022989504.1	2.2e-22	57.02	uncharacterized protein LOC111486561 [Cucurbita maxima]	[more]
KAG6589175.1	4.2e-21	55.26	hypothetical protein SDJN03_17740, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022930696.1	5.5e-21	55.26	uncharacterized protein LOC111437093 [Cucurbita moschata]	[more]

BLAST of MS022396 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS022396 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C3E5	1.0e-60	100.00	uncharacterized protein LOC111007894 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A0A0K6V6	2.3e-25	60.53	Ubiquitin-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G044...	[more]
A0A6J1JPI4	1.1e-22	57.02	uncharacterized protein LOC111486561 OS=Cucurbita maxima OX=3661 GN=LOC111486561...	[more]
A0A6J1ERN4	2.7e-21	55.26	uncharacterized protein LOC111437093 OS=Cucurbita moschata OX=3662 GN=LOC1114370...	[more]
A0A7N2MBI9	3.9e-20	63.86	Ubiquitin-like domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

BLAST of MS022396 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G32360.1	9.4e-11	41.41	Ubiquitin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000626	Ubiquitin-like domain	SMART	SM00213	ubq_7	coord: 1..80 e-value: 5.4E-4 score: 29.3
IPR000626	Ubiquitin-like domain	PFAM	PF00240	ubiquitin	coord: 4..78 e-value: 1.3E-6 score: 28.1
IPR000626	Ubiquitin-like domain	PROSITE	PS50053	UBIQUITIN_2	coord: 1..77 score: 11.83414
None	No IPR available	GENE3D	3.10.20.90		coord: 1..79 e-value: 2.2E-10 score: 42.2
None	No IPR available	CDD	cd17039	Ubl_ubiquitin_like	coord: 3..78 e-value: 2.20409E-7 score: 42.9686
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 1..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS022396.1	MS022396.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding