MS022336 (gene) Bitter gourd (TR) v1

Overview


Name	MS022336
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Eukaryotic translation initiation factor 4C
Location	scaffold47: 2640460 .. 2640894 (-)
RNA-Seq Expression	MS022336
Synteny	MS022336

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAAAGAACAAGGGAAAGGGAGGAAAGAATAGGAAGAGAGGTAAGAATGAGGCAGATGATGAGAAGCGGGAGCTTGTGTTTAAGGAAGATGGGCAAGAATATGCCCAAGTTCTCCGAATGCTAGGCAATGGCCGGTGCGAAGCGATGTGTATTGATGGGACTAAACGCCTTTGCCATATTCGGGGAAAAATGCACAAGAAGGTTTGGATTGCAGCTGGGGATATCATTCTCGTTGGTCTCCGGGACTATCAGGACGACAAGGCTGATGTGATTCTCAAATACATGCCTGATGAAGCCAGGCTTTTGAAAGCTTACAGTGAGCTACCTGAGAATACACGTCTCAACGAGGGTATTGTTGGAGGTATGGATGATGACGATGAAGGTGGTGGTGATGCTTATATTGAGTTTGAGGATGAAGATATTGATAAGATC

mRNA sequence

ATGCCAAAGAACAAGGGAAAGGGAGGAAAGAATAGGAAGAGAGGTAAGAATGAGGCAGATGATGAGAAGCGGGAGCTTGTGTTTAAGGAAGATGGGCAAGAATATGCCCAAGTTCTCCGAATGCTAGGCAATGGCCGGTGCGAAGCGATGTGTATTGATGGGACTAAACGCCTTTGCCATATTCGGGGAAAAATGCACAAGAAGGTTTGGATTGCAGCTGGGGATATCATTCTCGTTGGTCTCCGGGACTATCAGGACGACAAGGCTGATGTGATTCTCAAATACATGCCTGATGAAGCCAGGCTTTTGAAAGCTTACAGTGAGCTACCTGAGAATACACGTCTCAACGAGGGTATTGTTGGAGGTATGGATGATGACGATGAAGGTGGTGGTGATGCTTATATTGAGTTTGAGGATGAAGATATTGATAAGATC

Coding sequence (CDS)

ATGCCAAAGAACAAGGGAAAGGGAGGAAAGAATAGGAAGAGAGGTAAGAATGAGGCAGATGATGAGAAGCGGGAGCTTGTGTTTAAGGAAGATGGGCAAGAATATGCCCAAGTTCTCCGAATGCTAGGCAATGGCCGGTGCGAAGCGATGTGTATTGATGGGACTAAACGCCTTTGCCATATTCGGGGAAAAATGCACAAGAAGGTTTGGATTGCAGCTGGGGATATCATTCTCGTTGGTCTCCGGGACTATCAGGACGACAAGGCTGATGTGATTCTCAAATACATGCCTGATGAAGCCAGGCTTTTGAAAGCTTACAGTGAGCTACCTGAGAATACACGTCTCAACGAGGGTATTGTTGGAGGTATGGATGATGACGATGAAGGTGGTGGTGATGCTTATATTGAGTTTGAGGATGAAGATATTGATAAGATC

Protein sequence

MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYSELPENTRLNEGIVGGMDDDDEGGGDAYIEFEDEDIDKI

Homology

[Close]

BLAST of MS022336 vs. NCBI nr
Match: XP_022135622.1 (eukaryotic translation initiation factor 1A-like [Momordica charantia])

HSP 1 Score: 290.8 bits (743), Expect = 6.5e-75
Identity = 144/145 (99.31%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYSELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGLR+YQDDKADVILKYMPDEARLLKAYSELPENTRLNEGIV
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLREYQDDKADVILKYMPDEARLLKAYSELPENTRLNEGIV 120

Query: 121 GGMDDDDEGGGDAYIEFEDEDIDKI 146
           GGMDDDDEGGGDAYIEFEDEDIDKI
Sbjct: 121 GGMDDDDEGGGDAYIEFEDEDIDKI 145

[Close]

BLAST of MS022336 vs. NCBI nr
Match: XP_004144524.1 (eukaryotic translation initiation factor 1A [Cucumis sativus] >XP_008455498.1 PREDICTED: eukaryotic translation initiation factor 1A-like [Cucumis melo] >XP_038888593.1 eukaryotic translation initiation factor 1A-like [Benincasa hispida] >KAA0059115.1 eukaryotic translation initiation factor 1A [Cucumis melo var. makuwa] >KGN43463.1 hypothetical protein Csa_020194 [Cucumis sativus] >TYK21620.1 eukaryotic translation initiation factor 1A [Cucumis melo var. makuwa])

HSP 1 Score: 290.8 bits (743), Expect = 6.5e-75
Identity = 144/145 (99.31%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYSELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAY ELPENTRLNEGIV
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120

Query: 121 GGMDDDDEGGGDAYIEFEDEDIDKI 146
           GGMDDDDEGGGDAYIEFEDEDIDKI
Sbjct: 121 GGMDDDDEGGGDAYIEFEDEDIDKI 145

[Close]

BLAST of MS022336 vs. NCBI nr
Match: XP_022930658.1 (eukaryotic translation initiation factor 1A-like [Cucurbita moschata] >XP_022988995.1 eukaryotic translation initiation factor 1A-like [Cucurbita maxima] >XP_023529812.1 eukaryotic translation initiation factor 1A-like [Cucurbita pepo subsp. pepo] >KAG6589133.1 hypothetical protein SDJN03_17698, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 289.7 bits (740), Expect = 1.4e-74
Identity = 143/145 (98.62%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYSELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAY ELPENTRLNEGIV
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120

Query: 121 GGMDDDDEGGGDAYIEFEDEDIDKI 146
           GGMDDDDEGGGDAYIEFEDEDID+I
Sbjct: 121 GGMDDDDEGGGDAYIEFEDEDIDRI 145

[Close]

BLAST of MS022336 vs. NCBI nr
Match: XP_031490608.1 (eukaryotic translation initiation factor 1A [Nymphaea colorata])

HSP 1 Score: 282.0 bits (720), Expect = 3.0e-72
Identity = 139/145 (95.86%), Postives = 141/145 (97.24%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYSELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAY ELPENTRLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIT 120

Query: 121 GGMDDDDEGGGDAYIEFEDEDIDKI 146
           GG+DD+DEGG D YIEFEDEDIDKI
Sbjct: 121 GGLDDEDEGGADDYIEFEDEDIDKI 145

[Close]

BLAST of MS022336 vs. NCBI nr
Match: XP_004304062.1 (PREDICTED: eukaryotic translation initiation factor 1A [Fragaria vesca subsp. vesca])

HSP 1 Score: 280.8 bits (717), Expect = 6.7e-72
Identity = 138/145 (95.17%), Postives = 141/145 (97.24%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYSELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAY ELPENTRLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIT 120

Query: 121 GGMDDDDEGGGDAYIEFEDEDIDKI 146
           GG+D++DE GGD YIEFEDEDIDKI
Sbjct: 121 GGLDEEDEAGGDEYIEFEDEDIDKI 145

[Close]

BLAST of MS022336 vs. ExPASy Swiss-Prot
Match: P56331 (Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia OX=3882 PE=2 SV=2)

HSP 1 Score: 256.1 bits (653), Expect = 2.3e-67
Identity = 131/146 (89.73%), Postives = 137/146 (93.84%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADD+KRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDDKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYSELPENTRLNEGI- 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILK MPDEARLLKAY ELP+NTRLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKLMPDEARLLKAYGELPDNTRLNEGIG 120

Query: 121 VGGMDDDDEGGGDAYIEFEDEDIDKI 146
            GG+D++ +   D YIEFEDEDIDKI
Sbjct: 121 AGGLDEEMDTAND-YIEFEDEDIDKI 145

[Close]

BLAST of MS022336 vs. ExPASy Swiss-Prot
Match: P47815 (Eukaryotic translation initiation factor 1A OS=Triticum aestivum OX=4565 PE=1 SV=2)

HSP 1 Score: 245.7 bits (626), Expect = 3.1e-64
Identity = 124/146 (84.93%), Postives = 134/146 (91.78%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADD+KRELVFKEDGQEYAQV RMLGNGRCEA+C+DGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDDKRELVFKEDGQEYAQVTRMLGNGRCEAICVDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYSELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDI+LVGLRDYQDDKADVILKYM DEARLLKAY ELP+  RLNEG+ 
Sbjct: 61  IRGKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMNDEARLLKAYGELPDTVRLNEGV- 120

Query: 121 GGMDDDDEGGGDA-YIEFEDEDIDKI 146
             +D  +EG GD+ YI+FEDEDIDKI
Sbjct: 121 -DVDGPEEGEGDSDYIQFEDEDIDKI 144

[Close]

BLAST of MS022336 vs. ExPASy Swiss-Prot
Match: P47813 (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Homo sapiens OX=9606 GN=EIF1AX PE=1 SV=2)

HSP 1 Score: 201.8 bits (512), Expect = 5.2e-51
Identity = 107/145 (73.79%), Postives = 117/145 (80.69%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCH
Sbjct: 1   MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYSELPENTRLNEGIV 120
           IRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAY ELPE+ ++NE   
Sbjct: 61  IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT 120

Query: 121 GGMDDDDEGGGDAYIEFEDEDIDKI 146
            G  DDDE   D  I  +DEDID I
Sbjct: 121 FGPGDDDEIQFDD-IGDDDEDIDDI 144

[Close]

BLAST of MS022336 vs. ExPASy Swiss-Prot
Match: Q8BMJ3 (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Mus musculus OX=10090 GN=Eif1ax PE=2 SV=3)

HSP 1 Score: 201.8 bits (512), Expect = 5.2e-51
Identity = 107/145 (73.79%), Postives = 117/145 (80.69%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCH
Sbjct: 1   MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYSELPENTRLNEGIV 120
           IRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAY ELPE+ ++NE   
Sbjct: 61  IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT 120

Query: 121 GGMDDDDEGGGDAYIEFEDEDIDKI 146
            G  DDDE   D  I  +DEDID I
Sbjct: 121 FGPGDDDEIQFDD-IGDDDEDIDDI 144

[Close]

BLAST of MS022336 vs. ExPASy Swiss-Prot
Match: Q5RA42 (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Pongo abelii OX=9601 GN=EIF1AX PE=2 SV=3)

HSP 1 Score: 201.8 bits (512), Expect = 5.2e-51
Identity = 107/145 (73.79%), Postives = 117/145 (80.69%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCH
Sbjct: 1   MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYSELPENTRLNEGIV 120
           IRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAY ELPE+ ++NE   
Sbjct: 61  IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT 120

Query: 121 GGMDDDDEGGGDAYIEFEDEDIDKI 146
            G  DDDE   D  I  +DEDID I
Sbjct: 121 FGPGDDDEIQFDD-IGDDDEDIDDI 144

[Close]

BLAST of MS022336 vs. ExPASy TrEMBL
Match: A0A5A7UZV0 (Eukaryotic translation initiation factor 4C OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold150G00180 PE=3 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 3.1e-75
Identity = 144/145 (99.31%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYSELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAY ELPENTRLNEGIV
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120

Query: 121 GGMDDDDEGGGDAYIEFEDEDIDKI 146
           GGMDDDDEGGGDAYIEFEDEDIDKI
Sbjct: 121 GGMDDDDEGGGDAYIEFEDEDIDKI 145

[Close]

BLAST of MS022336 vs. ExPASy TrEMBL
Match: A0A0A0K1Y5 (Eukaryotic translation initiation factor 4C OS=Cucumis sativus OX=3659 GN=Csa_7G037660 PE=3 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 3.1e-75
Identity = 144/145 (99.31%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYSELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAY ELPENTRLNEGIV
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120

Query: 121 GGMDDDDEGGGDAYIEFEDEDIDKI 146
           GGMDDDDEGGGDAYIEFEDEDIDKI
Sbjct: 121 GGMDDDDEGGGDAYIEFEDEDIDKI 145

[Close]

BLAST of MS022336 vs. ExPASy TrEMBL
Match: A0A6J1C384 (Eukaryotic translation initiation factor 4C OS=Momordica charantia OX=3673 GN=LOC111007531 PE=3 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 3.1e-75
Identity = 144/145 (99.31%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYSELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGLR+YQDDKADVILKYMPDEARLLKAYSELPENTRLNEGIV
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLREYQDDKADVILKYMPDEARLLKAYSELPENTRLNEGIV 120

Query: 121 GGMDDDDEGGGDAYIEFEDEDIDKI 146
           GGMDDDDEGGGDAYIEFEDEDIDKI
Sbjct: 121 GGMDDDDEGGGDAYIEFEDEDIDKI 145

[Close]

BLAST of MS022336 vs. ExPASy TrEMBL
Match: A0A1S3C1S5 (Eukaryotic translation initiation factor 4C OS=Cucumis melo OX=3656 GN=LOC103495650 PE=3 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 3.1e-75
Identity = 144/145 (99.31%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYSELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAY ELPENTRLNEGIV
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120

Query: 121 GGMDDDDEGGGDAYIEFEDEDIDKI 146
           GGMDDDDEGGGDAYIEFEDEDIDKI
Sbjct: 121 GGMDDDDEGGGDAYIEFEDEDIDKI 145

[Close]

BLAST of MS022336 vs. ExPASy TrEMBL
Match: A0A6J1JL52 (Eukaryotic translation initiation factor 4C OS=Cucurbita maxima OX=3661 GN=LOC111486190 PE=3 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 7.0e-75
Identity = 143/145 (98.62%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYSELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAY ELPENTRLNEGIV
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIV 120

Query: 121 GGMDDDDEGGGDAYIEFEDEDIDKI 146
           GGMDDDDEGGGDAYIEFEDEDID+I
Sbjct: 121 GGMDDDDEGGGDAYIEFEDEDIDRI 145

[Close]

BLAST of MS022336 vs. TAIR 10
Match: AT2G04520.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 269.2 bits (687), Expect = 1.9e-72
Identity = 131/145 (90.34%), Postives = 138/145 (95.17%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYSELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDI+LVGLRDYQDDKADVILKYM DEARLLKAY ELPENTRLNEGIV
Sbjct: 61  IRGKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIV 120

Query: 121 GGMDDDDEGGGDAYIEFEDEDIDKI 146
           G ++DDD+   D Y+EFEDEDID+I
Sbjct: 121 GDLEDDDDNNDDDYVEFEDEDIDRI 145

[Close]

BLAST of MS022336 vs. TAIR 10
Match: AT5G35680.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 265.8 bits (678), Expect = 2.1e-71
Identity = 131/145 (90.34%), Postives = 137/145 (94.48%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRC+ MCIDG KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCDVMCIDGVKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYSELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYM DEARLLKAY ELPENTRLNEGIV
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIV 120

Query: 121 GGMDDDDEGGGDAYIEFEDEDIDKI 146
           G +DDDD+  G+ YIEFEDEDID+I
Sbjct: 121 GDLDDDDDVVGEDYIEFEDEDIDRI 145

[Close]

BLAST of MS022336 vs. TAIR 10
Match: AT5G35680.2 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 265.8 bits (678), Expect = 2.1e-71
Identity = 131/145 (90.34%), Postives = 137/145 (94.48%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRC+ MCIDG KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCDVMCIDGVKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYSELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYM DEARLLKAY ELPENTRLNEGIV
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIV 120

Query: 121 GGMDDDDEGGGDAYIEFEDEDIDKI 146
           G +DDDD+  G+ YIEFEDEDID+I
Sbjct: 121 GDLDDDDDVVGEDYIEFEDEDIDRI 145

[Close]

BLAST of MS022336 vs. TAIR 10
Match: AT5G35680.3 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 245.4 bits (625), Expect = 2.9e-65
Identity = 119/128 (92.97%), Postives = 123/128 (96.09%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRC+ MCIDG KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCDVMCIDGVKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYSELPENTRLNEGIV 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYM DEARLLKAY ELPENTRLNEGIV
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIV 120

Query: 121 GGMDDDDE 129
           G +DDDD+
Sbjct: 121 GDLDDDDD 128

The following BLAST results are available for this feature:

BLAST of MS022336 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135622.1	6.5e-75	99.31	eukaryotic translation initiation factor 1A-like [Momordica charantia]	[more]
XP_004144524.1	6.5e-75	99.31	eukaryotic translation initiation factor 1A [Cucumis sativus] >XP_008455498.1 PR...	[more]
XP_022930658.1	1.4e-74	98.62	eukaryotic translation initiation factor 1A-like [Cucurbita moschata] >XP_022988...	[more]
XP_031490608.1	3.0e-72	95.86	eukaryotic translation initiation factor 1A [Nymphaea colorata]	[more]
XP_004304062.1	6.7e-72	95.17	PREDICTED: eukaryotic translation initiation factor 1A [Fragaria vesca subsp. ve...	[more]

BLAST of MS022336 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P56331	2.3e-67	89.73	Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia OX=3882 PE=...	[more]
P47815	3.1e-64	84.93	Eukaryotic translation initiation factor 1A OS=Triticum aestivum OX=4565 PE=1 SV...	[more]
P47813	5.2e-51	73.79	Eukaryotic translation initiation factor 1A, X-chromosomal OS=Homo sapiens OX=96...	[more]
Q8BMJ3	5.2e-51	73.79	Eukaryotic translation initiation factor 1A, X-chromosomal OS=Mus musculus OX=10...	[more]
Q5RA42	5.2e-51	73.79	Eukaryotic translation initiation factor 1A, X-chromosomal OS=Pongo abelii OX=96...	[more]

BLAST of MS022336 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UZV0	3.1e-75	99.31	Eukaryotic translation initiation factor 4C OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A0A0K1Y5	3.1e-75	99.31	Eukaryotic translation initiation factor 4C OS=Cucumis sativus OX=3659 GN=Csa_7G...	[more]
A0A6J1C384	3.1e-75	99.31	Eukaryotic translation initiation factor 4C OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A1S3C1S5	3.1e-75	99.31	Eukaryotic translation initiation factor 4C OS=Cucumis melo OX=3656 GN=LOC103495...	[more]
A0A6J1JL52	7.0e-75	98.62	Eukaryotic translation initiation factor 4C OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]

BLAST of MS022336 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G04520.1	1.9e-72	90.34	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G35680.1	2.1e-71	90.34	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G35680.2	2.1e-71	90.34	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G35680.3	2.9e-65	92.97	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001253	Translation initiation factor 1A (eIF-1A)	SMART	SM00652	eIF1neu4	coord: 28..110 e-value: 1.6E-47 score: 173.9
IPR001253	Translation initiation factor 1A (eIF-1A)	TIGRFAM	TIGR00523	TIGR00523	coord: 14..110 e-value: 7.6E-34 score: 113.7
IPR001253	Translation initiation factor 1A (eIF-1A)	PANTHER	PTHR21668	EIF-1A	coord: 1..145
IPR001253	Translation initiation factor 1A (eIF-1A)	HAMAP	MF_00216	aIF_1A	coord: 16..110 score: 18.005501
IPR001253	Translation initiation factor 1A (eIF-1A)	CDD	cd05793	S1_IF1A	coord: 33..109 e-value: 1.11119E-40 score: 128.795
None	No IPR available	GENE3D	2.40.50.140		coord: 2..145 e-value: 6.6E-57 score: 192.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR21668:SF18	EUKARYOTIC TRANSLATION INITIATION FACTOR 1A-LIKE	coord: 1..145
IPR006196	RNA-binding domain, S1, IF1 type	PFAM	PF01176	eIF-1a	coord: 32..93 e-value: 4.8E-22 score: 77.6
IPR006196	RNA-binding domain, S1, IF1 type	PROSITE	PS50832	S1_IF1_TYPE	coord: 22..96 score: 31.623802
IPR018104	Translation initiation factor 1A (eIF-1A), conserved site	PROSITE	PS01262	IF1A	coord: 41..63
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 2..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS022336.1	MS022336.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006413	translational initiation
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003743	translation initiation factor activity