MS022329 (gene) Bitter gourd (TR) v1

Overview


Name	MS022329
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	glycine-rich protein-like isoform X2
Location	scaffold47: 2604433 .. 2604543 (-)
RNA-Seq Expression	MS022329
Synteny	MS022329

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCCAAGGCTTTCGCTCTCCTCGGTCTTCTCTTCGCCATTGTCCTCCTCATCTCCTCCGAAGTCTCTGCGAGAGACCTCGCGCAGACCTCGACTGAGAAGAACAAC

mRNA sequence

ATGAGTTCCAAGGCTTTCGCTCTCCTCGGTCTTCTCTTCGCCATTGTCCTCCTCATCTCCTCCGAAGTCTCTGCGAGAGACCTCGCGCAGACCTCGACTGAGAAGAACAAC

Coding sequence (CDS)

ATGAGTTCCAAGGCTTTCGCTCTCCTCGGTCTTCTCTTCGCCATTGTCCTCCTCATCTCCTCCGAAGTCTCTGCGAGAGACCTCGCGCAGACCTCGACTGAGAAGAACAAC

Protein sequence

MSSKAFALLGLLFAIVLLISSEVSARDLAQTSTEKNN

Homology

[Close]

BLAST of MS022329 vs. NCBI nr
Match: XP_022952571.1 (glycine-rich protein-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 55.1 bits (131), Expect = 1.5e-04
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 1  MSSKAFALLGLLFAIVLLISSEVSARDLAQTSTEKNN 38
          MSSKAF  LGLLFA+VLLISSEV+ARDLA+TST+K N
Sbjct: 19 MSSKAFIFLGLLFALVLLISSEVAARDLAETSTKKEN 55

[Close]

BLAST of MS022329 vs. NCBI nr
Match: XP_022952570.1 (cold and drought-regulated protein CORA-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 55.1 bits (131), Expect = 1.5e-04
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 1  MSSKAFALLGLLFAIVLLISSEVSARDLAQTSTEKNN 38
          MSSKAF  LGLLFA+VLLISSEV+ARDLA+TST+K N
Sbjct: 19 MSSKAFIFLGLLFALVLLISSEVAARDLAETSTKKEN 55

[Close]

BLAST of MS022329 vs. NCBI nr
Match: KAG6572253.1 (Glycine-rich protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 55.1 bits (131), Expect = 1.5e-04
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 1  MSSKAFALLGLLFAIVLLISSEVSARDLAQTSTEKNN 38
          MSSKAF  LGLLFA+VLLISSEV+ARDLA+TST+K N
Sbjct: 1  MSSKAFIFLGLLFALVLLISSEVAARDLAETSTKKEN 37

[Close]

BLAST of MS022329 vs. NCBI nr
Match: KAG7011884.1 (Glycine-rich protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 55.1 bits (131), Expect = 1.5e-04
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 1  MSSKAFALLGLLFAIVLLISSEVSARDLAQTSTEKNN 38
          MSSKAF  LGLLFA+VLLISSEV+ARDLA+TST+K N
Sbjct: 1  MSSKAFIFLGLLFALVLLISSEVAARDLAETSTKKEN 37

[Close]

BLAST of MS022329 vs. ExPASy TrEMBL
Match: A0A6J1GM55 (cold and drought-regulated protein CORA-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111455223 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 7.4e-05
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 1  MSSKAFALLGLLFAIVLLISSEVSARDLAQTSTEKNN 38
          MSSKAF  LGLLFA+VLLISSEV+ARDLA+TST+K N
Sbjct: 19 MSSKAFIFLGLLFALVLLISSEVAARDLAETSTKKEN 55

[Close]

BLAST of MS022329 vs. ExPASy TrEMBL
Match: A0A6J1GKL6 (glycine-rich protein-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111455223 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 7.4e-05
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 1  MSSKAFALLGLLFAIVLLISSEVSARDLAQTSTEKNN 38
          MSSKAF  LGLLFA+VLLISSEV+ARDLA+TST+K N
Sbjct: 19 MSSKAFIFLGLLFALVLLISSEVAARDLAETSTKKEN 55

The following BLAST results are available for this feature:

BLAST of MS022329 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022952571.1	1.5e-04	81.08	glycine-rich protein-like isoform X2 [Cucurbita moschata]	[more]
XP_022952570.1	1.5e-04	81.08	cold and drought-regulated protein CORA-like isoform X1 [Cucurbita moschata]	[more]
KAG6572253.1	1.5e-04	81.08	Glycine-rich protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7011884.1	1.5e-04	81.08	Glycine-rich protein, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of MS022329 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS022329 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GM55	7.4e-05	81.08	cold and drought-regulated protein CORA-like isoform X1 OS=Cucurbita moschata OX...	[more]
A0A6J1GKL6	7.4e-05	81.08	glycine-rich protein-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC1114552...	[more]

BLAST of MS022329 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010800	Glycine rich protein	PFAM	PF07172	GRP	coord: 1..34 e-value: 1.2E-8 score: 35.5

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS022329.1	MS022329.1	mRNA