MS022321 (gene) Bitter gourd (TR) v1

Overview


Name	MS022321
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Protochlorophyllide reductase
Location	scaffold47: 2544232 .. 2544552 (-)
RNA-Seq Expression	MS022321
Synteny	MS022321

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGCGGTTGGCGGCGGCGCTGAGGAGAAACCTCCACAACATAAGGAAGAGCCCACGAGTGGCAGATGAAAGCATGTACGGCGGCGGCGGCGGCGGCGACGGCGGCGGAATTGTGGCGGAAAGAGACCGGAGAGGAGGGAATTCATATGGGTTTTCGATGATTTACAGCGTTCTTCGGACCCCATTTTCGGTTCTGTGTTGCTTCTCTCAACCGCACGTTAATGGCGCCGACGGGCTGTGGGTCTCCGGCGAGTTCGCCAGAATATCGGAAGTCAACCATCTTATGGTAAGCGACAGCATGAGATATGCAATCTTAATG

mRNA sequence

ATGTGGCGGTTGGCGGCGGCGCTGAGGAGAAACCTCCACAACATAAGGAAGAGCCCACGAGTGGCAGATGAAAGCATGTACGGCGGCGGCGGCGGCGGCGACGGCGGCGGAATTGTGGCGGAAAGAGACCGGAGAGGAGGGAATTCATATGGGTTTTCGATGATTTACAGCGTTCTTCGGACCCCATTTTCGGTTCTGTGTTGCTTCTCTCAACCGCACGTTAATGGCGCCGACGGGCTGTGGGTCTCCGGCGAGTTCGCCAGAATATCGGAAGTCAACCATCTTATGGTAAGCGACAGCATGAGATATGCAATCTTAATG

Coding sequence (CDS)

ATGTGGCGGTTGGCGGCGGCGCTGAGGAGAAACCTCCACAACATAAGGAAGAGCCCACGAGTGGCAGATGAAAGCATGTACGGCGGCGGCGGCGGCGGCGACGGCGGCGGAATTGTGGCGGAAAGAGACCGGAGAGGAGGGAATTCATATGGGTTTTCGATGATTTACAGCGTTCTTCGGACCCCATTTTCGGTTCTGTGTTGCTTCTCTCAACCGCACGTTAATGGCGCCGACGGGCTGTGGGTCTCCGGCGAGTTCGCCAGAATATCGGAAGTCAACCATCTTATGGTAAGCGACAGCATGAGATATGCAATCTTAATG

Protein sequence

MWRLAAALRRNLHNIRKSPRVADESMYGGGGGGDGGGIVAERDRRGGNSYGFSMIYSVLRTPFSVLCCFSQPHVNGADGLWVSGEFARISEVNHLMVSDSMRYAILM

Homology

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BLAST of MS022321 vs. NCBI nr
Match: XP_022136143.1 (uncharacterized protein LOC111007908 [Momordica charantia])

HSP 1 Score: 211.8 bits (538), Expect = 2.8e-51
Identity = 105/107 (98.13%), Postives = 105/107 (98.13%), Query Frame = 0


Query: 1   MWRLAAALRRNLHNIRKSPRVADESMYGGGGGGDGGGIVAERDRRGGNSYGFSMIYSVLR 60
           MWRLAA LRRNLHNIRKSPRVADESMY GGGGGDGGGIVAERDRRGGNSYGFSMIYSVLR
Sbjct: 1   MWRLAAELRRNLHNIRKSPRVADESMY-GGGGGDGGGIVAERDRRGGNSYGFSMIYSVLR 60

Query: 61  TPFSVLCCFSQPHVNGADGLWVSGEFARISEVNHLMVSDSMRYAILM 108
           TPFSVLCCFSQPHVNGADGLWVSGEFARISEVNHLMVSDSMRYAILM
Sbjct: 61  TPFSVLCCFSQPHVNGADGLWVSGEFARISEVNHLMVSDSMRYAILM 106

[Close]

BLAST of MS022321 vs. NCBI nr
Match: KAG6572248.1 (hypothetical protein SDJN03_28976, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011878.1 hypothetical protein SDJN02_26785, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 187.2 bits (474), Expect = 7.4e-44
Identity = 90/107 (84.11%), Postives = 97/107 (90.65%), Query Frame = 0


Query: 1   MWRLAAALRRNLHNIRKSPRVADESMYGGGGGGDGGGIVAERDRRGGNSYGFSMIYSVLR 60
           MWRLAAA+RRNLHNIRKSPRVADESMY  GGG DGGG V + +RR GNSYGFSMIY++LR
Sbjct: 1   MWRLAAAVRRNLHNIRKSPRVADESMYSAGGGADGGGRVIDGNRRDGNSYGFSMIYTLLR 60

Query: 61  TPFSVLCCFSQPHVNGADGLWVSGEFARISEVNHLMVSDSMRYAILM 108
           TPFS+L CFSQPHVNG DG+WVSGEF RISEVNHLMVSDSMRYAILM
Sbjct: 61  TPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 107

[Close]

BLAST of MS022321 vs. NCBI nr
Match: XP_038888385.1 (uncharacterized protein LOC120078235 [Benincasa hispida])

HSP 1 Score: 186.8 bits (473), Expect = 9.7e-44
Identity = 95/112 (84.82%), Postives = 100/112 (89.29%), Query Frame = 0


Query: 1   MWRLAAALRRNLHNIRKSPRVADESMYGGGGGG--DGGGIVA---ERDRRGGNSYGFSMI 60
           MWRLAAA+RRNLHNIRKSPRVADESMYGG GGG  DGGG VA   + DRR GNSYGFSMI
Sbjct: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGGAGGGGVDGGGRVAAVVDGDRREGNSYGFSMI 60

Query: 61  YSVLRTPFSVLCCFSQPHVNGADGLWVSGEFARISEVNHLMVSDSMRYAILM 108
           YS+LRTPFS+L CFSQPHVNG DG+WVSGEF RISEVNHLMVSDSMRYAILM
Sbjct: 61  YSLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 112

[Close]

BLAST of MS022321 vs. NCBI nr
Match: XP_022969305.1 (uncharacterized protein LOC111468352 [Cucurbita maxima])

HSP 1 Score: 185.3 bits (469), Expect = 2.8e-43
Identity = 89/107 (83.18%), Postives = 96/107 (89.72%), Query Frame = 0


Query: 1   MWRLAAALRRNLHNIRKSPRVADESMYGGGGGGDGGGIVAERDRRGGNSYGFSMIYSVLR 60
           MWRLAAA+RRNLHNIRKSPRVADESMY  GGG DGG  V + +RR GNSYGFSMIY++LR
Sbjct: 1   MWRLAAAVRRNLHNIRKSPRVADESMYSAGGGADGGATVIDGNRREGNSYGFSMIYTLLR 60

Query: 61  TPFSVLCCFSQPHVNGADGLWVSGEFARISEVNHLMVSDSMRYAILM 108
           TPFS+L CFSQPHVNG DG+WVSGEF RISEVNHLMVSDSMRYAILM
Sbjct: 61  TPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 107

[Close]

BLAST of MS022321 vs. NCBI nr
Match: KAA0059153.1 (uncharacterized protein E6C27_scaffold430G00710 [Cucumis melo var. makuwa] >TYK02535.1 uncharacterized protein E5676_scaffold201G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 184.1 bits (466), Expect = 6.3e-43
Identity = 91/109 (83.49%), Postives = 97/109 (88.99%), Query Frame = 0


Query: 1   MWRLAAALRRNLHNIRKSPRVADESMYGGG--GGGDGGGIVAERDRRGGNSYGFSMIYSV 60
           MWRLAAA+RRNLHNIRKSPRVADESMYGGG  GGG    +V + DRR GNSYGFSMIYS+
Sbjct: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGGGVDGGGRVAAVVVDGDRREGNSYGFSMIYSL 60

Query: 61  LRTPFSVLCCFSQPHVNGADGLWVSGEFARISEVNHLMVSDSMRYAILM 108
           LRTPFS+L CFSQPHVNG DG+WVSGEF RISEVNHLMVSDSMRYAILM
Sbjct: 61  LRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 109

[Close]

BLAST of MS022321 vs. ExPASy TrEMBL
Match: A0A6J1C6U0 (uncharacterized protein LOC111007908 OS=Momordica charantia OX=3673 GN=LOC111007908 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 1.4e-51
Identity = 105/107 (98.13%), Postives = 105/107 (98.13%), Query Frame = 0


Query: 1   MWRLAAALRRNLHNIRKSPRVADESMYGGGGGGDGGGIVAERDRRGGNSYGFSMIYSVLR 60
           MWRLAA LRRNLHNIRKSPRVADESMY GGGGGDGGGIVAERDRRGGNSYGFSMIYSVLR
Sbjct: 1   MWRLAAELRRNLHNIRKSPRVADESMY-GGGGGDGGGIVAERDRRGGNSYGFSMIYSVLR 60

Query: 61  TPFSVLCCFSQPHVNGADGLWVSGEFARISEVNHLMVSDSMRYAILM 108
           TPFSVLCCFSQPHVNGADGLWVSGEFARISEVNHLMVSDSMRYAILM
Sbjct: 61  TPFSVLCCFSQPHVNGADGLWVSGEFARISEVNHLMVSDSMRYAILM 106

[Close]

BLAST of MS022321 vs. ExPASy TrEMBL
Match: A0A6J1HZK3 (uncharacterized protein LOC111468352 OS=Cucurbita maxima OX=3661 GN=LOC111468352 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.4e-43
Identity = 89/107 (83.18%), Postives = 96/107 (89.72%), Query Frame = 0


Query: 1   MWRLAAALRRNLHNIRKSPRVADESMYGGGGGGDGGGIVAERDRRGGNSYGFSMIYSVLR 60
           MWRLAAA+RRNLHNIRKSPRVADESMY  GGG DGG  V + +RR GNSYGFSMIY++LR
Sbjct: 1   MWRLAAAVRRNLHNIRKSPRVADESMYSAGGGADGGATVIDGNRREGNSYGFSMIYTLLR 60

Query: 61  TPFSVLCCFSQPHVNGADGLWVSGEFARISEVNHLMVSDSMRYAILM 108
           TPFS+L CFSQPHVNG DG+WVSGEF RISEVNHLMVSDSMRYAILM
Sbjct: 61  TPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 107

[Close]

BLAST of MS022321 vs. ExPASy TrEMBL
Match: A0A5D3BTM8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold201G00140 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 3.0e-43
Identity = 91/109 (83.49%), Postives = 97/109 (88.99%), Query Frame = 0


Query: 1   MWRLAAALRRNLHNIRKSPRVADESMYGGG--GGGDGGGIVAERDRRGGNSYGFSMIYSV 60
           MWRLAAA+RRNLHNIRKSPRVADESMYGGG  GGG    +V + DRR GNSYGFSMIYS+
Sbjct: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGGGVDGGGRVAAVVVDGDRREGNSYGFSMIYSL 60

Query: 61  LRTPFSVLCCFSQPHVNGADGLWVSGEFARISEVNHLMVSDSMRYAILM 108
           LRTPFS+L CFSQPHVNG DG+WVSGEF RISEVNHLMVSDSMRYAILM
Sbjct: 61  LRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 109

[Close]

BLAST of MS022321 vs. ExPASy TrEMBL
Match: A0A1S3C134 (uncharacterized protein LOC103495667 OS=Cucumis melo OX=3656 GN=LOC103495667 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 5.0e-38
Identity = 82/104 (78.85%), Postives = 89/104 (85.58%), Query Frame = 0


Query: 1   MWRLAAALRRNLHNIRKSPRVADESMYGGG--GGGDGGGIVAERDRRGGNSYGFSMIYSV 60
           MWRLAAA+RRNLHNIRKSPRVADESMYGGG  GGG    +V + DRR GNSYGFSMIYS+
Sbjct: 41  MWRLAAAVRRNLHNIRKSPRVADESMYGGGVDGGGRVAAVVVDGDRREGNSYGFSMIYSL 100

Query: 61  LRTPFSVLCCFSQPHVNGADGLWVSGEFARISEVNHLMVSDSMR 103
           LRTPFS+L CFSQPHVNG DG+WVSGEF RISEVNHLM S+  R
Sbjct: 101 LRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMQSNLWR 144

[Close]

BLAST of MS022321 vs. ExPASy TrEMBL
Match: A0A6J1ER34 (uncharacterized protein LOC111437033 OS=Cucurbita moschata OX=3662 GN=LOC111437033 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 4.3e-37
Identity = 82/107 (76.64%), Postives = 89/107 (83.18%), Query Frame = 0


Query: 1   MWRLAAALRRNLHNIRKSPRVADESMYGGGGGGDGGGIVAERDRRGGNSYGFSMIYSVLR 60
           MWRLAAA+R  LHNIRKSPRVADESM+ GGG   GG +V    RR  NS+G S+IY+VLR
Sbjct: 1   MWRLAAAVRSKLHNIRKSPRVADESMFSGGGVDGGGRVVDGGRRRERNSHGVSIIYNVLR 60

Query: 61  TPFSVLCCFSQPHVNGADGLWVSGEFARISEVNHLMVSDSMRYAILM 108
           TPFS L CFS PHVNG DG+WVSGEFARISEVNHLMVSDSMRYAILM
Sbjct: 61  TPFSFLSCFSHPHVNGVDGMWVSGEFARISEVNHLMVSDSMRYAILM 107

[Close]

BLAST of MS022321 vs. TAIR 10
Match: AT5G35732.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04795.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 113.2 bits (282), Expect = 1.3e-25
Identity = 59/107 (55.14%), Postives = 74/107 (69.16%), Query Frame = 0


Query: 1   MWRLAAALRRNLHNIRKSPRVADESMYGGGGGGDGGGIVAERDRRGGNSYGFSMIYSVLR 60
           M ++ + LRRNL N+RKSPRVAD++       G G G+VA   R G NS        ++R
Sbjct: 1   MTQMLSVLRRNLQNLRKSPRVADDTELPSSTSGAGPGVVANGRRDGFNSV-------IMR 60

Query: 61  TPFSVLCCFSQPHVNGADGLWVSGEFARISEVNHLMVSDSMRYAILM 108
            PFS++ CF+ P V+G DGLWVSG++  ISEVNHLMVSDSMRYAILM
Sbjct: 61  FPFSIISCFAVPRVSGTDGLWVSGDYGSISEVNHLMVSDSMRYAILM 100

[Close]

BLAST of MS022321 vs. TAIR 10
Match: AT2G04795.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35732.1); Has 18 Blast hits to 18 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 99.4 bits (246), Expect = 1.9e-21
Identity = 53/116 (45.69%), Postives = 70/116 (60.34%), Query Frame = 0


Query: 1   MWRLAAALRRNLHNIRKSPRVADESM---------YGGGGGGDGGGIVAERDRRGGNSYG 60
           M ++ + LRRNL N+RKSPRVADES          +GGG G +GG               
Sbjct: 1   MLKMLSILRRNLQNLRKSPRVADESALPSTTVNGDHGGGNGSNGG--------------- 60

Query: 61  FSMIYSVLRTPFSVLCCFSQPHVNGADGLWVSGEFARISEVNHLMVSDSMRYAILM 108
                 +++ P S++ CFS P V+ ADG+WVSG++ R+SEVNHLMV D MRYA+LM
Sbjct: 61  ------IMKFPLSIMSCFSVPRVSRADGVWVSGDYGRVSEVNHLMVCDGMRYALLM 95

The following BLAST results are available for this feature:

BLAST of MS022321 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136143.1	2.8e-51	98.13	uncharacterized protein LOC111007908 [Momordica charantia]	[more]
KAG6572248.1	7.4e-44	84.11	hypothetical protein SDJN03_28976, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038888385.1	9.7e-44	84.82	uncharacterized protein LOC120078235 [Benincasa hispida]	[more]
XP_022969305.1	2.8e-43	83.18	uncharacterized protein LOC111468352 [Cucurbita maxima]	[more]
KAA0059153.1	6.3e-43	83.49	uncharacterized protein E6C27_scaffold430G00710 [Cucumis melo var. makuwa] >TYK0...	[more]

BLAST of MS022321 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS022321 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C6U0	1.4e-51	98.13	uncharacterized protein LOC111007908 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A6J1HZK3	1.4e-43	83.18	uncharacterized protein LOC111468352 OS=Cucurbita maxima OX=3661 GN=LOC111468352...	[more]
A0A5D3BTM8	3.0e-43	83.49	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3C134	5.0e-38	78.85	uncharacterized protein LOC103495667 OS=Cucumis melo OX=3656 GN=LOC103495667 PE=...	[more]
A0A6J1ER34	4.3e-37	76.64	uncharacterized protein LOC111437033 OS=Cucurbita moschata OX=3662 GN=LOC1114370...	[more]

BLAST of MS022321 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G35732.1	1.3e-25	55.14	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G04795.1	1.9e-21	45.69	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR48165	BNAC03G44900D PROTEIN	coord: 1..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS022321.1	MS022321.1	mRNA