MS022184 (gene) Bitter gourd (TR) v1

Overview


Name	MS022184
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold47: 1492598 .. 1492966 (-)
RNA-Seq Expression	MS022184
Synteny	MS022184

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCGAAGGGAAGCAGATGGCGTCGCCGAACGGAGCTTTCCGGCGGCTTTTCCGACCTCGGTGCCGGAAAAATGCGAGAGCCAATAGTCTATTGGAAGCCATTGCTAAGGCGAGCACTGGCTCTGTTTCTCAGAGCGAAGAAGACGGAATCGTCCGGATAAAGATGGTGGTGAGGAAGACAGATTTAGCTCAATTTCTGGAAGCCATGGGCGGCGGCGGCGGTGGAGGCGGAGATGTTGCTTCTCCGCCGGTCTCCGTCGAGCAGCGGTTGGCTTTCGTGAGGCGGAAGAATCTTCTCCGAGCGAAATTAGCGGCGGCGACTTGGAGTCCGGCGCTACAGAGCATTCCAGAAGAGATGGATTCAATT

mRNA sequence

ATGCTCGAAGGGAAGCAGATGGCGTCGCCGAACGGAGCTTTCCGGCGGCTTTTCCGACCTCGGTGCCGGAAAAATGCGAGAGCCAATAGTCTATTGGAAGCCATTGCTAAGGCGAGCACTGGCTCTGTTTCTCAGAGCGAAGAAGACGGAATCGTCCGGATAAAGATGGTGGTGAGGAAGACAGATTTAGCTCAATTTCTGGAAGCCATGGGCGGCGGCGGCGGTGGAGGCGGAGATGTTGCTTCTCCGCCGGTCTCCGTCGAGCAGCGGTTGGCTTTCGTGAGGCGGAAGAATCTTCTCCGAGCGAAATTAGCGGCGGCGACTTGGAGTCCGGCGCTACAGAGCATTCCAGAAGAGATGGATTCAATT

Coding sequence (CDS)

ATGCTCGAAGGGAAGCAGATGGCGTCGCCGAACGGAGCTTTCCGGCGGCTTTTCCGACCTCGGTGCCGGAAAAATGCGAGAGCCAATAGTCTATTGGAAGCCATTGCTAAGGCGAGCACTGGCTCTGTTTCTCAGAGCGAAGAAGACGGAATCGTCCGGATAAAGATGGTGGTGAGGAAGACAGATTTAGCTCAATTTCTGGAAGCCATGGGCGGCGGCGGCGGTGGAGGCGGAGATGTTGCTTCTCCGCCGGTCTCCGTCGAGCAGCGGTTGGCTTTCGTGAGGCGGAAGAATCTTCTCCGAGCGAAATTAGCGGCGGCGACTTGGAGTCCGGCGCTACAGAGCATTCCAGAAGAGATGGATTCAATT

Protein sequence

MLEGKQMASPNGAFRRLFRPRCRKNARANSLLEAIAKASTGSVSQSEEDGIVRIKMVVRKTDLAQFLEAMGGGGGGGGDVASPPVSVEQRLAFVRRKNLLRAKLAAATWSPALQSIPEEMDSI

Homology

[Close]

BLAST of MS022184 vs. NCBI nr
Match: KAA0025124.1 (hypothetical protein E6C27_scaffold124G00220 [Cucumis melo var. makuwa] >TYK19366.1 hypothetical protein E5676_scaffold3037G00200 [Cucumis melo var. makuwa])

HSP 1 Score: 184.5 bits (467), Expect = 5.5e-43
Identity = 100/128 (78.12%), Postives = 110/128 (85.94%), Query Frame = 0


Query: 1   MLEGKQMASPNGAFRRLFRPRCRKNARANSLLEAIAKAS---TGSVSQSEEDGIVRIKMV 60
           M+EGKQ+ SPNG FRRLFR RCRK+A+AN LLEAIAKAS   TG VS SEE+G+VRIKMV
Sbjct: 1   MIEGKQVVSPNGTFRRLFRARCRKSAKANCLLEAIAKASREGTGFVSHSEENGVVRIKMV 60

Query: 61  VRKTDLAQFLEAMGGG---GGGGGDVASPPVSVEQRLAFVRRKNLLRAKLAAATWSPALQ 120
           V+KTDLAQ LEAMGGG   GGGGG VA+  VS+EQRLA VRRK LLRAKLAAATWSPALQ
Sbjct: 61  VKKTDLAQVLEAMGGGGGDGGGGGGVAAASVSIEQRLAIVRRKQLLRAKLAAATWSPALQ 120

Query: 121 SIPEEMDS 123
           SIPEE+DS
Sbjct: 121 SIPEEIDS 128

[Close]

BLAST of MS022184 vs. NCBI nr
Match: XP_023511743.1 (uncharacterized protein LOC111776510 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 178.7 bits (452), Expect = 3.0e-41
Identity = 98/125 (78.40%), Postives = 108/125 (86.40%), Query Frame = 0


Query: 1   MLEGKQMASPNGAFRRLFRPRCRKNARANSLLEAIAKAS---TGSVSQSEEDGIVRIKMV 60
           M++GKQ ASPNGAFRRLFR R RKNA+A++LLEAIAK S   TG VSQ+EEDG+VRIKMV
Sbjct: 1   MIDGKQTASPNGAFRRLFRARGRKNAKASNLLEAIAKVSREGTGFVSQNEEDGVVRIKMV 60

Query: 61  VRKTDLAQFLEAMGGGGGGGGDVASPPVSVEQRLAFVRRKNLLRAKLAAATWSPALQSIP 120
           V+KTDLAQ LEAM GGGGGGG VA   VSVEQRLA +RRK  LRAKLAAATWSPALQSIP
Sbjct: 61  VKKTDLAQVLEAMAGGGGGGG-VAPASVSVEQRLAIMRRKQFLRAKLAAATWSPALQSIP 120

Query: 121 EEMDS 123
           EE+DS
Sbjct: 121 EEIDS 124

[Close]

BLAST of MS022184 vs. NCBI nr
Match: KGN43274.1 (hypothetical protein Csa_020212 [Cucumis sativus])

HSP 1 Score: 176.8 bits (447), Expect = 1.2e-40
Identity = 94/125 (75.20%), Postives = 104/125 (83.20%), Query Frame = 0


Query: 1   MLEGKQMASPNGAFRRLFRPRCRKNARANSLLEAIAKAS---TGSVSQSEEDGIVRIKMV 60
           M+EGKQ+ASPNG FRRLFR RCRK+A+AN LLEAIAKAS    G VS SEE+G+VRIKMV
Sbjct: 1   MIEGKQVASPNGTFRRLFRARCRKSAKANGLLEAIAKASREGAGFVSHSEENGVVRIKMV 60

Query: 61  VRKTDLAQFLEAMGGGGGGGGDVASPPVSVEQRLAFVRRKNLLRAKLAAATWSPALQSIP 120
           V+KTDL Q LEAMGGG GGGG VA   VS+E RL  +RRK  LRAKLAAATWSPALQSIP
Sbjct: 61  VKKTDLVQVLEAMGGGDGGGGVVAPASVSMEHRLTVLRRKQFLRAKLAAATWSPALQSIP 120

Query: 121 EEMDS 123
           EE+DS
Sbjct: 121 EEIDS 125

[Close]

BLAST of MS022184 vs. NCBI nr
Match: KAG6572129.1 (hypothetical protein SDJN03_28857, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 169.9 bits (429), Expect = 1.4e-38
Identity = 94/124 (75.81%), Postives = 104/124 (83.87%), Query Frame = 0


Query: 1   MLEGKQMASPNGAFRRLFRPRCRKNARANSLLEAIAKAS---TGSVSQSEEDGIVRIKMV 60
           M++GKQ ASPNGAFRRLFR R RKNA+A++LLEAIAK S   TG VSQ+EEDG+VRIKMV
Sbjct: 1   MIDGKQTASPNGAFRRLFRARGRKNAKASNLLEAIAKVSREGTGFVSQNEEDGVVRIKMV 60

Query: 61  VRKTDLAQFLEAMGGGGGGGGDVASPPVSVEQRLAFVRRKNLLRAKLAAATWSPALQSIP 120
           V+KTDLAQ LEA+ GGGGGGG VA   VSVE RLA +RRK  LRAKLAAATWSPALQSIP
Sbjct: 61  VKKTDLAQVLEALAGGGGGGG-VAPASVSVEHRLAIMRRKQFLRAKLAAATWSPALQSIP 120

Query: 121 EEMD 122
           E  D
Sbjct: 121 EIED 123

[Close]

BLAST of MS022184 vs. NCBI nr
Match: PON89926.1 (hypothetical protein TorRG33x02_142120 [Trema orientale])

HSP 1 Score: 96.7 bits (239), Expect = 1.5e-16
Identity = 67/131 (51.15%), Postives = 83/131 (63.36%), Query Frame = 0


Query: 4   GKQMASP--NGAFRRLFRPRCRK---NARANSLLEAIAKASTGSVSQSEEDGIVRIKMVV 63
           G   ASP  +    RL R R  +   N R+N LL+AIAK S G VSQ+EEDG+VR+K+VV
Sbjct: 9   GNNKASPKRSDLQSRLHRARNHQKNINTRSNLLLDAIAK-SNGVVSQTEEDGVVRMKIVV 68

Query: 64  RKTDLAQFLEAMGGGGGGGG----DVASPPVSVEQRLAFVRRKN-LLRAKLA----AATW 121
           RK DL Q LE MGG   G G       SP  S EQRL+ +R+K+ L+RA LA     ++W
Sbjct: 69  RKQDLKQMLEVMGGNKQGNGSNNPSSFSPSFSAEQRLSLLRKKHVLMRANLAKQSRRSSW 128

[Close]

BLAST of MS022184 vs. ExPASy TrEMBL
Match: A0A5A7SHL7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3037G00200 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 2.7e-43
Identity = 100/128 (78.12%), Postives = 110/128 (85.94%), Query Frame = 0


Query: 1   MLEGKQMASPNGAFRRLFRPRCRKNARANSLLEAIAKAS---TGSVSQSEEDGIVRIKMV 60
           M+EGKQ+ SPNG FRRLFR RCRK+A+AN LLEAIAKAS   TG VS SEE+G+VRIKMV
Sbjct: 1   MIEGKQVVSPNGTFRRLFRARCRKSAKANCLLEAIAKASREGTGFVSHSEENGVVRIKMV 60

Query: 61  VRKTDLAQFLEAMGGG---GGGGGDVASPPVSVEQRLAFVRRKNLLRAKLAAATWSPALQ 120
           V+KTDLAQ LEAMGGG   GGGGG VA+  VS+EQRLA VRRK LLRAKLAAATWSPALQ
Sbjct: 61  VKKTDLAQVLEAMGGGGGDGGGGGGVAAASVSIEQRLAIVRRKQLLRAKLAAATWSPALQ 120

Query: 121 SIPEEMDS 123
           SIPEE+DS
Sbjct: 121 SIPEEIDS 128

[Close]

BLAST of MS022184 vs. ExPASy TrEMBL
Match: A0A0A0K2L8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G014600 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 5.6e-41
Identity = 94/125 (75.20%), Postives = 104/125 (83.20%), Query Frame = 0


Query: 1   MLEGKQMASPNGAFRRLFRPRCRKNARANSLLEAIAKAS---TGSVSQSEEDGIVRIKMV 60
           M+EGKQ+ASPNG FRRLFR RCRK+A+AN LLEAIAKAS    G VS SEE+G+VRIKMV
Sbjct: 1   MIEGKQVASPNGTFRRLFRARCRKSAKANGLLEAIAKASREGAGFVSHSEENGVVRIKMV 60

Query: 61  VRKTDLAQFLEAMGGGGGGGGDVASPPVSVEQRLAFVRRKNLLRAKLAAATWSPALQSIP 120
           V+KTDL Q LEAMGGG GGGG VA   VS+E RL  +RRK  LRAKLAAATWSPALQSIP
Sbjct: 61  VKKTDLVQVLEAMGGGDGGGGVVAPASVSMEHRLTVLRRKQFLRAKLAAATWSPALQSIP 120

Query: 121 EEMDS 123
           EE+DS
Sbjct: 121 EEIDS 125

[Close]

BLAST of MS022184 vs. ExPASy TrEMBL
Match: A0A2P5EWK1 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_142120 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 7.3e-17
Identity = 67/131 (51.15%), Postives = 83/131 (63.36%), Query Frame = 0


Query: 4   GKQMASP--NGAFRRLFRPRCRK---NARANSLLEAIAKASTGSVSQSEEDGIVRIKMVV 63
           G   ASP  +    RL R R  +   N R+N LL+AIAK S G VSQ+EEDG+VR+K+VV
Sbjct: 9   GNNKASPKRSDLQSRLHRARNHQKNINTRSNLLLDAIAK-SNGVVSQTEEDGVVRMKIVV 68

Query: 64  RKTDLAQFLEAMGGGGGGGG----DVASPPVSVEQRLAFVRRKN-LLRAKLA----AATW 121
           RK DL Q LE MGG   G G       SP  S EQRL+ +R+K+ L+RA LA     ++W
Sbjct: 69  RKQDLKQMLEVMGGNKQGNGSNNPSSFSPSFSAEQRLSLLRKKHVLMRANLAKQSRRSSW 128

[Close]

BLAST of MS022184 vs. ExPASy TrEMBL
Match: A0A2P5B8E1 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_261910 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 6.2e-16
Identity = 65/130 (50.00%), Postives = 82/130 (63.08%), Query Frame = 0


Query: 4   GKQMASP--NGAFRRLFRPRCRK--NARANSLLEAIAKASTGSVSQSEEDGIVRIKMVVR 63
           G   ASP  +    RL R R ++  N R+N LL+ IAK S G VSQ+EEDG+VR+K+VVR
Sbjct: 9   GNNKASPRRSDLQSRLHRARNQQKINTRSNLLLDVIAK-SNGVVSQAEEDGVVRMKIVVR 68

Query: 64  KTDLAQFLEAMGGGGGGGG----DVASPPVSVEQRLAFVRRKN-LLRAKLA----AATWS 121
           K DL Q LE MGG   G         SP  S EQRL+ +R+K+ L+RA LA     ++WS
Sbjct: 69  KQDLKQMLEVMGGNKQGSSSNNPSSFSPSFSAEQRLSLLRKKHVLMRANLAKQSRRSSWS 128

[Close]

BLAST of MS022184 vs. ExPASy TrEMBL
Match: A0A7N2N056 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 6.2e-16
Identity = 55/123 (44.72%), Postives = 80/123 (65.04%), Query Frame = 0


Query: 7   MASPNGAFRRLFRPRCRKNARANSLLEAIAKASTGSVSQSEEDGIVRIKMVVRKTDLAQF 66
           M +P   FR+ FR + +KN+R++ L   +     G VS  E+DG+VR+K+VV+K DL Q 
Sbjct: 8   MVTPKRVFRQ-FRAQNQKNSRSDMLETVVNVNGGGVVSCIEKDGVVRMKIVVKKQDLTQM 67

Query: 67  LEAMGGGGGGGGDV-----ASPPVSVEQRLAFVRRKNLLRA----KLAAATWSPALQSIP 121
           LE MGGGGGG           P +S EQRL  +++K++LRA    + ++++WSPALQSIP
Sbjct: 68  LEVMGGGGGGKSKAHLQPSIMPSLSAEQRLNLLQKKHVLRANTTKESSSSSWSPALQSIP 127

The following BLAST results are available for this feature:

BLAST of MS022184 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025124.1	5.5e-43	78.13	hypothetical protein E6C27_scaffold124G00220 [Cucumis melo var. makuwa] >TYK1936...	[more]
XP_023511743.1	3.0e-41	78.40	uncharacterized protein LOC111776510 [Cucurbita pepo subsp. pepo]	[more]
KGN43274.1	1.2e-40	75.20	hypothetical protein Csa_020212 [Cucumis sativus]	[more]
KAG6572129.1	1.4e-38	75.81	hypothetical protein SDJN03_28857, partial [Cucurbita argyrosperma subsp. sorori...	[more]
PON89926.1	1.5e-16	51.15	hypothetical protein TorRG33x02_142120 [Trema orientale]	[more]

BLAST of MS022184 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS022184 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SHL7	2.7e-43	78.13	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0K2L8	5.6e-41	75.20	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G014600 PE=4 SV=1	[more]
A0A2P5EWK1	7.3e-17	51.15	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_142120 PE=4 SV...	[more]
A0A2P5B8E1	6.2e-16	50.00	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_261910 PE...	[more]
A0A7N2N056	6.2e-16	44.72	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

BLAST of MS022184 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33148	PLASTID MOVEMENT IMPAIRED PROTEIN-RELATED	coord: 7..119
None	No IPR available	PANTHER	PTHR33148:SF4	OS02G0667300 PROTEIN	coord: 7..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS022184.1	MS022184.1	mRNA