MS022136 (gene) Bitter gourd (TR) v1

Overview


Name	MS022136
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	ribosomal protein L16
Location	scaffold47: 1179599 .. 1179850 (-)
RNA-Seq Expression	MS022136
Synteny	MS022136

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTAGGGGTTGCAAACCAGACGGTACACAACTTGGTTTTGGAAGATATGGCACTAAAAGTTGTAGAGCTGGTCGTCTTTCATATCGAGCCATTGAAGCAGCGCGTCGGGCTATAATCGGACAATTCCGAAGAAATGGTAAAATATGGGTAAGAGTTCTCGCGGATCTCCCTATTACCGGGAAACCTACAGAAGTCAGAATGGGAAGAGGAAAAGGAAATCCTACGGGTTGGATTGCTCATGTGTCCACGGGA

mRNA sequence

AGTAGGGGTTGCAAACCAGACGGTACACAACTTGGTTTTGGAAGATATGGCACTAAAAGTTGTAGAGCTGGTCGTCTTTCATATCGAGCCATTGAAGCAGCGCGTCGGGCTATAATCGGACAATTCCGAAGAAATGGTAAAATATGGGTAAGAGTTCTCGCGGATCTCCCTATTACCGGGAAACCTACAGAAGTCAGAATGGGAAGAGGAAAAGGAAATCCTACGGGTTGGATTGCTCATGTGTCCACGGGA

Coding sequence (CDS)

AGTAGGGGTTGCAAACCAGACGGTACACAACTTGGTTTTGGAAGATATGGCACTAAAAGTTGTAGAGCTGGTCGTCTTTCATATCGAGCCATTGAAGCAGCGCGTCGGGCTATAATCGGACAATTCCGAAGAAATGGTAAAATATGGGTAAGAGTTCTCGCGGATCTCCCTATTACCGGGAAACCTACAGAAGTCAGAATGGGAAGAGGAAAAGGAAATCCTACGGGTTGGATTGCTCATGTGTCCACGGGA

Protein sequence

SRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG

Homology

[Close]

BLAST of MS022136 vs. NCBI nr
Match: KAG6736870.1 (hypothetical protein POTOM_060208 [Populus tomentosa])

HSP 1 Score: 173.3 bits (438), Expect = 8.7e-40
Identity = 81/84 (96.43%), Postives = 83/84 (98.81%), Query Frame = 0


Query: 1   SRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITG 60
           SRGCKPDGTQLGFGRYGTKSC+AGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITG
Sbjct: 121 SRGCKPDGTQLGFGRYGTKSCKAGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITG 180

Query: 61  KPTEVRMGRGKGNPTGWIAHVSTG 85
           KPTE+RMGRGKGNPTGWIA VSTG
Sbjct: 181 KPTEIRMGRGKGNPTGWIARVSTG 204

[Close]

BLAST of MS022136 vs. NCBI nr
Match: YP_009745364.1 (ribosomal protein L16 [Salix paraflabellaris] >YP_009988226.1 ribosomal protein L16 [Salix cardiophylla] >YP_009988263.1 ribosomal protein L16 [Salix polaris] >QIH29810.1 ribosomal protein L16 [Salix paraflabellaris] >QNM38472.1 ribosomal protein L16 [Salix cardiophylla] >QNM38509.1 ribosomal protein L16 [Salix polaris])

HSP 1 Score: 173.3 bits (438), Expect = 8.7e-40
Identity = 81/84 (96.43%), Postives = 83/84 (98.81%), Query Frame = 0


Query: 1   SRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITG 60
           SRGCKPDGTQLGFGRYGTKSC+AGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITG
Sbjct: 18  SRGCKPDGTQLGFGRYGTKSCKAGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITG 77

Query: 61  KPTEVRMGRGKGNPTGWIAHVSTG 85
           KPTE+RMGRGKGNPTGWIA VSTG
Sbjct: 78  KPTEIRMGRGKGNPTGWIARVSTG 101

[Close]

BLAST of MS022136 vs. NCBI nr
Match: YP_009230369.1 (ribosomal protein L16, partial [Salix suchowensis] >AMF83889.1 ribosomal protein L16, partial [Salix suchowensis])

HSP 1 Score: 173.3 bits (438), Expect = 8.7e-40
Identity = 81/84 (96.43%), Postives = 83/84 (98.81%), Query Frame = 0


Query: 1   SRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITG 60
           SRGCKPDGTQLGFGRYGTKSC+AGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITG
Sbjct: 18  SRGCKPDGTQLGFGRYGTKSCKAGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITG 77

Query: 61  KPTEVRMGRGKGNPTGWIAHVSTG 85
           KPTE+RMGRGKGNPTGWIA VSTG
Sbjct: 78  KPTEIRMGRGKGNPTGWIARVSTG 101

[Close]

BLAST of MS022136 vs. NCBI nr
Match: KAG6746851.1 (hypothetical protein POTOM_049222 [Populus tomentosa])

HSP 1 Score: 173.3 bits (438), Expect = 8.7e-40
Identity = 81/84 (96.43%), Postives = 83/84 (98.81%), Query Frame = 0


Query: 1   SRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITG 60
           SRGCKPDGTQLGFGRYGTKSC+AGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITG
Sbjct: 121 SRGCKPDGTQLGFGRYGTKSCKAGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITG 180

Query: 61  KPTEVRMGRGKGNPTGWIAHVSTG 85
           KPTE+RMGRGKGNPTGWIA VSTG
Sbjct: 181 KPTEIRMGRGKGNPTGWIARVSTG 204

[Close]

BLAST of MS022136 vs. NCBI nr
Match: KAF9660759.1 (hypothetical protein SADUNF_SadunfMtG0007400 [Salix dunnii])

HSP 1 Score: 173.3 bits (438), Expect = 8.7e-40
Identity = 81/84 (96.43%), Postives = 83/84 (98.81%), Query Frame = 0


Query: 1   SRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITG 60
           SRGCKPDGTQLGFGRYGTKSC+AGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITG
Sbjct: 113 SRGCKPDGTQLGFGRYGTKSCKAGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITG 172

Query: 61  KPTEVRMGRGKGNPTGWIAHVSTG 85
           KPTE+RMGRGKGNPTGWIA VSTG
Sbjct: 173 KPTEIRMGRGKGNPTGWIARVSTG 196

[Close]

BLAST of MS022136 vs. ExPASy Swiss-Prot
Match: Q04715 (60S ribosomal protein L16, mitochondrial OS=Petunia hybrida OX=4102 GN=RPL16 PE=2 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 5.3e-40
Identity = 81/92 (88.04%), Postives = 82/92 (89.13%), Query Frame = 0


Query: 1   SRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAII--------GQFRRNGKIWVRV 60
           SRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAII        GQFRRNGKIWVRV
Sbjct: 45  SRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGHFHRAMSGQFRRNGKIWVRV 104

Query: 61  LADLPITGKPTEVRMGRGKGNPTGWIAHVSTG 85
           LAD+PITGKPTEVRMGRGKGNPTGWIA VS G
Sbjct: 105 LADIPITGKPTEVRMGRGKGNPTGWIARVSRG 136

[Close]

BLAST of MS022136 vs. ExPASy Swiss-Prot
Match: P46801 (60S ribosomal protein L16, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=RPL16 PE=3 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 2.9e-38
Identity = 79/92 (85.87%), Postives = 80/92 (86.96%), Query Frame = 0


Query: 1   SRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAII--------GQFRRNGKIWVRV 60
           SRGC+PDGTQLGFGRYGTKSCRAGRLSYRAIEAARRA I        GQFRRN KIWVRV
Sbjct: 59  SRGCEPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRATIGQFHRAMSGQFRRNCKIWVRV 118

Query: 61  LADLPITGKPTEVRMGRGKGNPTGWIAHVSTG 85
           LADLPITGKP EVRMGRGKGNPTGWIA VSTG
Sbjct: 119 LADLPITGKPAEVRMGRGKGNPTGWIARVSTG 150

[Close]

BLAST of MS022136 vs. ExPASy Swiss-Prot
Match: P49389 (60S ribosomal protein L16, mitochondrial OS=Brassica napus OX=3708 GN=RPL16 PE=3 SV=2)

HSP 1 Score: 158.3 bits (399), Expect = 3.8e-38
Identity = 79/93 (84.95%), Postives = 80/93 (86.02%), Query Frame = 0


Query: 1   SRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAII---------GQFRRNGKIWVR 60
           SRGCKPDGT+LGFGRYGTKSCRAGRLSYRAIEAARRA I         GQFRRN KIWVR
Sbjct: 50  SRGCKPDGTKLGFGRYGTKSCRAGRLSYRAIEAARRATIGHSFRRAMSGQFRRNCKIWVR 109

Query: 61  VLADLPITGKPTEVRMGRGKGNPTGWIAHVSTG 85
           VLADLPITGKP EVRMGRGKGNPTGWIA VSTG
Sbjct: 110 VLADLPITGKPAEVRMGRGKGNPTGWIARVSTG 142

[Close]

BLAST of MS022136 vs. ExPASy Swiss-Prot
Match: Q95747 (60S ribosomal protein L16, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPL16 PE=1 SV=3)

HSP 1 Score: 157.9 bits (398), Expect = 5.0e-38
Identity = 78/92 (84.78%), Postives = 80/92 (86.96%), Query Frame = 0


Query: 1   SRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAII--------GQFRRNGKIWVRV 60
           SRGCKPDGT+LGFGRYG KSC+AG LSYRAIEAARRAII        GQFRRNGKIWVRV
Sbjct: 53  SRGCKPDGTKLGFGRYGIKSCKAGCLSYRAIEAARRAIIGHFHRAMSGQFRRNGKIWVRV 112

Query: 61  LADLPITGKPTEVRMGRGKGNPTGWIAHVSTG 85
            ADLPITGKPTEVRMGRGKGNPTGWIA VSTG
Sbjct: 113 FADLPITGKPTEVRMGRGKGNPTGWIARVSTG 144

[Close]

BLAST of MS022136 vs. ExPASy Swiss-Prot
Match: P27927 (60S ribosomal protein L16, mitochondrial OS=Zea mays OX=4577 GN=RPL16 PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.0e-35
Identity = 77/92 (83.70%), Postives = 78/92 (84.78%), Query Frame = 0


Query: 1   SRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAII--------GQFRRNGKIWVRV 60
           SRG +PDGTQLGFGRYGTKS RAGRLSYRAIEAARRA I        GQFRRN KIWVRV
Sbjct: 59  SRGREPDGTQLGFGRYGTKSSRAGRLSYRAIEAARRATIGQFRRAMSGQFRRNCKIWVRV 118

Query: 61  LADLPITGKPTEVRMGRGKGNPTGWIAHVSTG 85
           LADLPITGKP EVRMGRGKGNPTGWIA VSTG
Sbjct: 119 LADLPITGKPAEVRMGRGKGNPTGWIARVSTG 150

[Close]

BLAST of MS022136 vs. ExPASy TrEMBL
Match: A0A6N2KSZ4 (Ribosomal_L16 domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS127822 PE=3 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 4.2e-40
Identity = 81/84 (96.43%), Postives = 83/84 (98.81%), Query Frame = 0


Query: 1   SRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITG 60
           SRGCKPDGTQLGFGRYGTKSC+AGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITG
Sbjct: 162 SRGCKPDGTQLGFGRYGTKSCKAGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITG 221

Query: 61  KPTEVRMGRGKGNPTGWIAHVSTG 85
           KPTE+RMGRGKGNPTGWIA VSTG
Sbjct: 222 KPTEIRMGRGKGNPTGWIARVSTG 245

[Close]

BLAST of MS022136 vs. ExPASy TrEMBL
Match: A0A7G9ISX8 (Ribosomal protein L16 OS=Salix cardiophylla OX=688335 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 4.2e-40
Identity = 81/84 (96.43%), Postives = 83/84 (98.81%), Query Frame = 0


Query: 1   SRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITG 60
           SRGCKPDGTQLGFGRYGTKSC+AGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITG
Sbjct: 18  SRGCKPDGTQLGFGRYGTKSCKAGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITG 77

Query: 61  KPTEVRMGRGKGNPTGWIAHVSTG 85
           KPTE+RMGRGKGNPTGWIA VSTG
Sbjct: 78  KPTEIRMGRGKGNPTGWIARVSTG 101

[Close]

BLAST of MS022136 vs. ExPASy TrEMBL
Match: A0A109WWC5 (Ribosomal protein L16 (Fragment) OS=Salix suchowensis OX=1278906 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 4.2e-40
Identity = 81/84 (96.43%), Postives = 83/84 (98.81%), Query Frame = 0


Query: 1   SRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITG 60
           SRGCKPDGTQLGFGRYGTKSC+AGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITG
Sbjct: 18  SRGCKPDGTQLGFGRYGTKSCKAGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITG 77

Query: 61  KPTEVRMGRGKGNPTGWIAHVSTG 85
           KPTE+RMGRGKGNPTGWIA VSTG
Sbjct: 78  KPTEIRMGRGKGNPTGWIARVSTG 101

[Close]

BLAST of MS022136 vs. ExPASy TrEMBL
Match: A0A451FPI4 (Ribosomal protein L16 (Fragment) OS=Populus alba OX=43335 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 4.2e-40
Identity = 81/84 (96.43%), Postives = 83/84 (98.81%), Query Frame = 0


Query: 1   SRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITG 60
           SRGCKPDGTQLGFGRYGTKSC+AGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITG
Sbjct: 20  SRGCKPDGTQLGFGRYGTKSCKAGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITG 79

Query: 61  KPTEVRMGRGKGNPTGWIAHVSTG 85
           KPTE+RMGRGKGNPTGWIA VSTG
Sbjct: 80  KPTEIRMGRGKGNPTGWIARVSTG 103

[Close]

BLAST of MS022136 vs. ExPASy TrEMBL
Match: A0A140HPA9 (Ribosomal protein L16 OS=Salix purpurea OX=77065 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 4.2e-40
Identity = 81/84 (96.43%), Postives = 83/84 (98.81%), Query Frame = 0


Query: 1   SRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITG 60
           SRGCKPDGTQLGFGRYGTKSC+AGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITG
Sbjct: 18  SRGCKPDGTQLGFGRYGTKSCKAGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITG 77

Query: 61  KPTEVRMGRGKGNPTGWIAHVSTG 85
           KPTE+RMGRGKGNPTGWIA VSTG
Sbjct: 78  KPTEIRMGRGKGNPTGWIARVSTG 101

[Close]

BLAST of MS022136 vs. TAIR 10
Match: ATMG00080.1 (ribosomal protein L16 )

HSP 1 Score: 163.3 bits (412), Expect = 8.4e-41
Identity = 80/92 (86.96%), Postives = 82/92 (89.13%), Query Frame = 0


Query: 1   SRGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAII--------GQFRRNGKIWVRV 60
           SRGCKPDGT+LGFGRYGTKSC+AGRLSYRAIEAARRAII        GQFRRNGKIWVRV
Sbjct: 53  SRGCKPDGTKLGFGRYGTKSCKAGRLSYRAIEAARRAIIGHFHRAMSGQFRRNGKIWVRV 112

Query: 61  LADLPITGKPTEVRMGRGKGNPTGWIAHVSTG 85
            ADLPITGKPTEVRMGRGKGNPTGWIA VSTG
Sbjct: 113 FADLPITGKPTEVRMGRGKGNPTGWIARVSTG 144

[Close]

BLAST of MS022136 vs. TAIR 10
Match: ATCG00790.1 (ribosomal protein L16 )

HSP 1 Score: 80.1 bits (196), Expect = 9.3e-16
Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 0


Query: 2   RGCKPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITGK 61
           +G    G ++ FGRY  ++     ++ R IEA RRA+    RR GKIWVR+  D P+T +
Sbjct: 18  KGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTVR 77

Query: 62  PTEVRMGRGKGNPTGWIAHVSTG 85
           P E RMG GKG+P  W+A V  G
Sbjct: 78  PAETRMGSGKGSPEYWVAVVKPG 100

[Close]

BLAST of MS022136 vs. TAIR 10
Match: AT2G28830.1 (PLANT U-BOX 12 )

HSP 1 Score: 58.5 bits (140), Expect = 2.9e-09
Identity = 29/70 (41.43%), Postives = 39/70 (55.71%), Query Frame = 0


Query: 15  RYGTKSCRAGRLSYRAIEAARRAIIGQFRRNGKIWVRVLADLPITGKPTEVRMGRGKGNP 74
           RY  ++     ++ R IEA RRA+     R   + V + AD P+T +P E RMGRGKG P
Sbjct: 858 RYALQTLEPAWITSRQIEAGRRAMTRNIGRGLTVRVHIFADKPVTVRPPETRMGRGKGAP 917

Query: 75  TGWIAHVSTG 85
             W+A V  G
Sbjct: 918 AFWVAVVKPG 927

The following BLAST results are available for this feature:

BLAST of MS022136 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6736870.1	8.7e-40	96.43	hypothetical protein POTOM_060208 [Populus tomentosa]	[more]
YP_009745364.1	8.7e-40	96.43	ribosomal protein L16 [Salix paraflabellaris] >YP_009988226.1 ribosomal protein ...	[more]
YP_009230369.1	8.7e-40	96.43	ribosomal protein L16, partial [Salix suchowensis] >AMF83889.1 ribosomal protein...	[more]
KAG6746851.1	8.7e-40	96.43	hypothetical protein POTOM_049222 [Populus tomentosa]	[more]
KAF9660759.1	8.7e-40	96.43	hypothetical protein SADUNF_SadunfMtG0007400 [Salix dunnii]	[more]

BLAST of MS022136 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q04715	5.3e-40	88.04	60S ribosomal protein L16, mitochondrial OS=Petunia hybrida OX=4102 GN=RPL16 PE=...	[more]
P46801	2.9e-38	85.87	60S ribosomal protein L16, mitochondrial OS=Oryza sativa subsp. japonica OX=3994...	[more]
P49389	3.8e-38	84.95	60S ribosomal protein L16, mitochondrial OS=Brassica napus OX=3708 GN=RPL16 PE=3...	[more]
Q95747	5.0e-38	84.78	60S ribosomal protein L16, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPL1...	[more]
P27927	1.0e-35	83.70	60S ribosomal protein L16, mitochondrial OS=Zea mays OX=4577 GN=RPL16 PE=3 SV=1	[more]

BLAST of MS022136 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6N2KSZ4	4.2e-40	96.43	Ribosomal_L16 domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LOCU...	[more]
A0A7G9ISX8	4.2e-40	96.43	Ribosomal protein L16 OS=Salix cardiophylla OX=688335 GN=rpl16 PE=3 SV=1	[more]
A0A109WWC5	4.2e-40	96.43	Ribosomal protein L16 (Fragment) OS=Salix suchowensis OX=1278906 GN=rpl16 PE=3 S...	[more]
A0A451FPI4	4.2e-40	96.43	Ribosomal protein L16 (Fragment) OS=Populus alba OX=43335 GN=rpl16 PE=3 SV=1	[more]
A0A140HPA9	4.2e-40	96.43	Ribosomal protein L16 OS=Salix purpurea OX=77065 GN=rpl16 PE=3 SV=1	[more]

BLAST of MS022136 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00080.1	8.4e-41	86.96	ribosomal protein L16	[more]
ATCG00790.1	9.3e-16	44.58	ribosomal protein L16	[more]
AT2G28830.1	2.9e-09	41.43	PLANT U-BOX 12	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000114	Ribosomal protein L16	PRINTS	PR00060	RIBOSOMALL16	coord: 72..84 score: 21.6 coord: 8..20 score: 46.77 coord: 42..71 score: 60.0 coord: 26..37 score: 61.67
IPR000114	Ribosomal protein L16	TIGRFAM	TIGR01164	TIGR01164	coord: 3..84 e-value: 8.5E-26 score: 88.5
IPR000114	Ribosomal protein L16	PANTHER	PTHR12220	50S/60S RIBOSOMAL PROTEIN L16	coord: 3..84
IPR036920	Ribosomal protein L10e/L16 superfamily	GENE3D	3.90.1170.10	Ribosomal protein L10e/L16	coord: 7..84 e-value: 9.0E-31 score: 108.2
IPR036920	Ribosomal protein L10e/L16 superfamily	SUPERFAMILY	54686	Ribosomal protein L16p/L10e	coord: 2..84
IPR016180	Ribosomal protein L10e/L16	PFAM	PF00252	Ribosomal_L16	coord: 2..84 e-value: 8.8E-26 score: 90.5
IPR016180	Ribosomal protein L10e/L16	CDD	cd01433	Ribosomal_L16_L10e	coord: 8..84 e-value: 5.33289E-28 score: 95.2511
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..84
None	No IPR available	PANTHER	PTHR12220:SF21	60S RIBOSOMAL PROTEIN L16, MITOCHONDRIAL	coord: 3..84
IPR020798	Ribosomal protein L16, conserved site	PROSITE	PS00586	RIBOSOMAL_L16_1	coord: 43..54
IPR020798	Ribosomal protein L16, conserved site	PROSITE	PS00701	RIBOSOMAL_L16_2	coord: 66..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS022136.1	MS022136.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome