MS022087 (gene) Bitter gourd (TR) v1

Overview


Name	MS022087
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	late embryogenesis abundant protein-like
Location	scaffold47: 783357 .. 783551 (+)
RNA-Seq Expression	MS022087
Synteny	MS022087

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGGAAAAAATGGCTGATATTCGGGATGAGCATGGGAACCCCATTGAACTCACCGATGAGCTTGGCAACCCGGTTGTGTTGACCGATGAACATGGCAACCCCATGCGGCTCACCGGGGTCGCCACCAAGATTGGCCCGACGCTCGGGTCGCTGTTGTGCAGTGGCCGTGATGATGGTCCTAGCGGTGGTCATGGC

mRNA sequence

GAGGAAAAAATGGCTGATATTCGGGATGAGCATGGGAACCCCATTGAACTCACCGATGAGCTTGGCAACCCGGTTGTGTTGACCGATGAACATGGCAACCCCATGCGGCTCACCGGGGTCGCCACCAAGATTGGCCCGACGCTCGGGTCGCTGTTGTGCAGTGGCCGTGATGATGGTCCTAGCGGTGGTCATGGC

Coding sequence (CDS)

GAGGAAAAAATGGCTGATATTCGGGATGAGCATGGGAACCCCATTGAACTCACCGATGAGCTTGGCAACCCGGTTGTGTTGACCGATGAACATGGCAACCCCATGCGGCTCACCGGGGTCGCCACCAAGATTGGCCCGACGCTCGGGTCGCTGTTGTGCAGTGGCCGTGATGATGGTCCTAGCGGTGGTCATGGC

Protein sequence

EEKMADIRDEHGNPIELTDELGNPVVLTDEHGNPMRLTGVATKIGPTLGSLLCSGRDDGPSGGHG

Homology

[Close]

BLAST of MS022087 vs. NCBI nr
Match: XP_022135876.1 (late embryogenesis abundant protein-like [Momordica charantia])

HSP 1 Score: 136.7 bits (343), Expect = 7.0e-29
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  EEKMADIRDEHGNPIELTDELGNPVVLTDEHGNPMRLTGVATKIGPTLGSLLCSGRDDGP 60
          EEKMADIRDEHGNPIELTDELGNPVVLTDEHGNPMRLTGVATKIGPTLGSLLCSGRDDGP
Sbjct: 2  EEKMADIRDEHGNPIELTDELGNPVVLTDEHGNPMRLTGVATKIGPTLGSLLCSGRDDGP 61

Query: 61 SGGHG 66
          SGGHG
Sbjct: 62 SGGHG 66

[Close]

BLAST of MS022087 vs. NCBI nr
Match: KAG7011719.1 (Embryogenic cell protein 40 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 96.3 bits (238), Expect = 1.0e-16
Identity = 49/64 (76.56%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 3  KMADIRDEHGNPIELTDELGNPVVLTDEHGNPMRLTGVATKIGPTLGSLLC-SGRDDGPS 62
          KMADI+DE+GNPI+LTDE GNPVVLTDEHGNP+RL+GVATK+G TLGSL+  SG +DG  
Sbjct: 8  KMADIQDEYGNPIQLTDEHGNPVVLTDEHGNPVRLSGVATKVGTTLGSLIFGSGDEDG-- 67

Query: 63 GGHG 66
          GGHG
Sbjct: 68 GGHG 69

[Close]

BLAST of MS022087 vs. NCBI nr
Match: KAG6572053.1 (Embryogenic cell protein 40, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 96.3 bits (238), Expect = 1.0e-16
Identity = 49/64 (76.56%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 3  KMADIRDEHGNPIELTDELGNPVVLTDEHGNPMRLTGVATKIGPTLGSLLC-SGRDDGPS 62
          KMADI+DE+GNPI+LTDE GNPVVLTDEHGNP+RL+GVATK+G TLGSL+  SG +DG  
Sbjct: 8  KMADIQDEYGNPIQLTDEHGNPVVLTDEHGNPVRLSGVATKVGTTLGSLIFGSGDEDG-- 67

Query: 63 GGHG 66
          GGHG
Sbjct: 68 GGHG 69

[Close]

BLAST of MS022087 vs. NCBI nr
Match: XP_038887694.1 (late embryogenesis abundant protein-like isoform X1 [Benincasa hispida])

HSP 1 Score: 95.5 bits (236), Expect = 1.8e-16
Identity = 48/63 (76.19%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 3  KMADIRDEHGNPIELTDELGNPVVLTDEHGNPMRLTGVATKIGPTLGSLLCSGRDDGPSG 62
          KMADIRDEHGNPI LTDE GNPV+LTDEHGNPM LTGVATK+G TLGSL+  G      G
Sbjct: 5  KMADIRDEHGNPIRLTDEQGNPVLLTDEHGNPMWLTGVATKVGTTLGSLMFGG-GGSRDG 64

Query: 63 GHG 66
          GHG
Sbjct: 65 GHG 66

[Close]

BLAST of MS022087 vs. NCBI nr
Match: XP_038887695.1 (embryogenic cell protein 40-like isoform X2 [Benincasa hispida])

HSP 1 Score: 95.5 bits (236), Expect = 1.8e-16
Identity = 48/63 (76.19%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 3  KMADIRDEHGNPIELTDELGNPVVLTDEHGNPMRLTGVATKIGPTLGSLLCSGRDDGPSG 62
          KMADIRDEHGNPI LTDE GNPV+LTDEHGNPM LTGVATK+G TLGSL+  G      G
Sbjct: 5  KMADIRDEHGNPIRLTDEQGNPVLLTDEHGNPMWLTGVATKVGTTLGSLMFGG-GGSRDG 64

Query: 63 GHG 66
          GHG
Sbjct: 65 GHG 66

[Close]

BLAST of MS022087 vs. ExPASy Swiss-Prot
Match: Q07322 (Embryogenic cell protein 40 OS=Daucus carota OX=4039 GN=ECP40 PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.2e-10
Identity = 32/46 (69.57%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 4  MADIRDEHGNPIELTDELGNPVVLTDEHGNPMRLTGVATKIGPTLG 50
          MAD+RDE GNPI+LTD+ GNPV LTDE+GNP+ +TGVAT  G T G
Sbjct: 1  MADLRDEKGNPIQLTDQHGNPVQLTDEYGNPVHITGVAT-TGATTG 45

[Close]

BLAST of MS022087 vs. ExPASy Swiss-Prot
Match: Q96261 (Probable dehydrin LEA OS=Arabidopsis thaliana OX=3702 GN=LEA PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.7e-09
Identity = 30/40 (75.00%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 4  MADIRDEHGNPIELTDELGNPVV-LTDEHGNPMRLTGVAT 43
          MAD+RDE GNPI LTD  GNP+V LTDEHGNPM LTGV +
Sbjct: 1  MADLRDEKGNPIHLTDTQGNPIVDLTDEHGNPMYLTGVVS 40

[Close]

BLAST of MS022087 vs. ExPASy Swiss-Prot
Match: P21298 (Late embryogenesis abundant protein OS=Raphanus sativus OX=3726 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.7e-09
Identity = 27/39 (69.23%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 4  MADIRDEHGNPIELTDELGNPVVLTDEHGNPMRLTGVAT 43
          MAD++DE GNPI LTD  GNPV L+DE GNPM +TGVA+
Sbjct: 1  MADLKDERGNPIHLTDAYGNPVQLSDEFGNPMHITGVAS 39

[Close]

BLAST of MS022087 vs. ExPASy TrEMBL
Match: A0A6J1C1Y9 (late embryogenesis abundant protein-like OS=Momordica charantia OX=3673 GN=LOC111007717 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 3.4e-29
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  EEKMADIRDEHGNPIELTDELGNPVVLTDEHGNPMRLTGVATKIGPTLGSLLCSGRDDGP 60
          EEKMADIRDEHGNPIELTDELGNPVVLTDEHGNPMRLTGVATKIGPTLGSLLCSGRDDGP
Sbjct: 2  EEKMADIRDEHGNPIELTDELGNPVVLTDEHGNPMRLTGVATKIGPTLGSLLCSGRDDGP 61

Query: 61 SGGHG 66
          SGGHG
Sbjct: 62 SGGHG 66

[Close]

BLAST of MS022087 vs. ExPASy TrEMBL
Match: A0A6J1GNP3 (late embryogenesis abundant protein-like OS=Cucurbita moschata OX=3662 GN=LOC111455607 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.0e-13
Identity = 42/59 (71.19%), Postives = 51/59 (86.44%), Query Frame = 0


Query: 8  RDEHGNPIELTDELGNPVVLTDEHGNPMRLTGVATKIGPTLGSLLC-SGRDDGPSGGHG 66
          +DE+GNPI+L DE GNPVVLTDEHGNP+RL+G+ATK+G TLGSL+  SG +DG  GGHG
Sbjct: 16 QDEYGNPIQLNDEHGNPVVLTDEHGNPVRLSGIATKVGTTLGSLIFGSGDEDG--GGHG 72

[Close]

BLAST of MS022087 vs. ExPASy TrEMBL
Match: A0A6J1IJR5 (late embryogenesis abundant protein-like OS=Cucurbita maxima OX=3661 GN=LOC111474289 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.7e-12
Identity = 42/59 (71.19%), Postives = 49/59 (83.05%), Query Frame = 0


Query: 8  RDEHGNPIELTDELGNPVVLTDEHGNPMRLTGVATKIGPTLGSLLC-SGRDDGPSGGHG 66
          +DE+GNPI+ TDE GNPVVLTDEHGNP+R  GVATK+G TLGSL+  SG +DG  GGHG
Sbjct: 16 QDEYGNPIQPTDEHGNPVVLTDEHGNPVRFFGVATKVGTTLGSLIFGSGGEDG--GGHG 72

[Close]

BLAST of MS022087 vs. ExPASy TrEMBL
Match: V9M5C3 (Dehydrin protein OS=Manihot esculenta OX=3983 GN=LTI30 PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.8e-12
Identity = 36/49 (73.47%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 4  MADIRDEHGNPIELTDELGNPVVLTDEHGNPMRLTGVATKIGPTLGSLL 53
          MAD+RDE+GNPI+LTDE GNPV LTDEHGNP+ +TGVAT   PTLG+L+
Sbjct: 1  MADLRDEYGNPIQLTDEHGNPVELTDEHGNPVHITGVATSKPPTLGTLM 49

[Close]

BLAST of MS022087 vs. ExPASy TrEMBL
Match: A0A6A3ADY7 (Bifunctional phosphatase IMPL2 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110485pilonHSYRG00116 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 8.4e-12
Identity = 41/65 (63.08%), Postives = 48/65 (73.85%), Query Frame = 0


Query: 4  MADIRDEHGNPIELTDELGNPVVLTDEHGNPMRLTGVATKIGP----TLGSLLCSGRDDG 63
          MAD+RDEHGNPI+LTDE GNPV LTDEHGNP+ +TGVATK  P    T+ SL+  G D G
Sbjct: 1  MADLRDEHGNPIQLTDEHGNPVQLTDEHGNPVYVTGVATKKNPGTTTTMSSLM--GHDTG 60

Query: 64 PSGGH 65
           +  H
Sbjct: 61 SAADH 63

[Close]

BLAST of MS022087 vs. TAIR 10
Match: AT2G21490.1 (dehydrin LEA )

HSP 1 Score: 62.8 bits (151), Expect = 1.2e-10
Identity = 30/40 (75.00%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 4  MADIRDEHGNPIELTDELGNPVV-LTDEHGNPMRLTGVAT 43
          MAD+RDE GNPI LTD  GNP+V LTDEHGNPM LTGV +
Sbjct: 1  MADLRDEKGNPIHLTDTQGNPIVDLTDEHGNPMYLTGVVS 40

[Close]

BLAST of MS022087 vs. TAIR 10
Match: AT4G39130.1 (Dehydrin family protein )

HSP 1 Score: 55.5 bits (132), Expect = 1.9e-08
Identity = 26/41 (63.41%), Postives = 29/41 (70.73%), Query Frame = 0


Query: 4  MADIRDEHGNPIELTDELGNPVVLTDEHGNPMRLTGVATKI 45
          MAD++DE GNPI LTD  G P  L DE GN M LTGVAT +
Sbjct: 1  MADLKDERGNPIYLTDAHGEPAQLMDEFGNAMHLTGVATTV 41

The following BLAST results are available for this feature:

BLAST of MS022087 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135876.1	7.0e-29	100.00	late embryogenesis abundant protein-like [Momordica charantia]	[more]
KAG7011719.1	1.0e-16	76.56	Embryogenic cell protein 40 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6572053.1	1.0e-16	76.56	Embryogenic cell protein 40, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_038887694.1	1.8e-16	76.19	late embryogenesis abundant protein-like isoform X1 [Benincasa hispida]	[more]
XP_038887695.1	1.8e-16	76.19	embryogenic cell protein 40-like isoform X2 [Benincasa hispida]	[more]

BLAST of MS022087 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q07322	1.2e-10	69.57	Embryogenic cell protein 40 OS=Daucus carota OX=4039 GN=ECP40 PE=1 SV=1	[more]
Q96261	1.7e-09	75.00	Probable dehydrin LEA OS=Arabidopsis thaliana OX=3702 GN=LEA PE=2 SV=1	[more]
P21298	3.7e-09	69.23	Late embryogenesis abundant protein OS=Raphanus sativus OX=3726 PE=2 SV=1	[more]

BLAST of MS022087 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C1Y9	3.4e-29	100.00	late embryogenesis abundant protein-like OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1GNP3	2.0e-13	71.19	late embryogenesis abundant protein-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1IJR5	1.7e-12	71.19	late embryogenesis abundant protein-like OS=Cucurbita maxima OX=3661 GN=LOC11147...	[more]
V9M5C3	3.8e-12	73.47	Dehydrin protein OS=Manihot esculenta OX=3983 GN=LTI30 PE=2 SV=1	[more]
A0A6A3ADY7	8.4e-12	63.08	Bifunctional phosphatase IMPL2 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig001104...	[more]

BLAST of MS022087 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21490.1	1.2e-10	75.00	dehydrin LEA	[more]
AT4G39130.1	1.9e-08	63.41	Dehydrin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33346:SF5	DEHYDRIN XERO 2-RELATED	coord: 4..43
IPR000167	Dehydrin	PANTHER	PTHR33346	DEHYDRIN XERO 2-RELATED	coord: 4..43

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS022087.1	MS022087.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009415	response to water