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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. GAACGTAATGCTCACAACTTCCCTCTAGACTTAGTTGCTGTTGAAGTTCCATCTATCAATGGA mRNA sequence GAACGTAATGCTCACAACTTCCCTCTAGACTTAGTTGCTGTTGAAGTTCCATCTATCAATGGA Coding sequence (CDS) GAACGTAATGCTCACAACTTCCCTCTAGACTTAGTTGCTGTTGAAGTTCCATCTATCAATGGA Protein sequence
Homology
BLAST of MS022069 vs. ExPASy Swiss-Prot
Match: Q2QDA8 (Photosystem II protein D1 OS=Cucumis sativus OX=3659 GN=psbA PE=3 SV=1) HSP 1 Score: 46.2 bits (108), Expect = 5.3e-05 Identity = 20/21 (95.24%), Postives = 20/21 (95.24%), Query Frame = 0
Query: 1 ERNAHNFPLDLVAVEVPSING 22
ERNAHNFPLDL AVEVPSING
Sbjct: 333 ERNAHNFPLDLAAVEVPSING 353
BLAST of MS022069 vs. ExPASy Swiss-Prot
Match: P10510 (Photosystem II protein D1 OS=Secale cereale OX=4550 GN=psbA PE=1 SV=3) HSP 1 Score: 46.2 bits (108), Expect = 5.3e-05 Identity = 20/21 (95.24%), Postives = 20/21 (95.24%), Query Frame = 0
Query: 1 ERNAHNFPLDLVAVEVPSING 22
ERNAHNFPLDL AVEVPSING
Sbjct: 333 ERNAHNFPLDLAAVEVPSING 353
BLAST of MS022069 vs. ExPASy Swiss-Prot
Match: P12463 (Photosystem II protein D1 OS=Triticum aestivum OX=4565 GN=psbA PE=3 SV=2) HSP 1 Score: 46.2 bits (108), Expect = 5.3e-05 Identity = 20/21 (95.24%), Postives = 20/21 (95.24%), Query Frame = 0
Query: 1 ERNAHNFPLDLVAVEVPSING 22
ERNAHNFPLDL AVEVPSING
Sbjct: 333 ERNAHNFPLDLAAVEVPSING 353
BLAST of MS022069 vs. ExPASy Swiss-Prot
Match: A1E9Y8 (Photosystem II protein D1 OS=Agrostis stolonifera OX=63632 GN=psbA PE=3 SV=1) HSP 1 Score: 45.1 bits (105), Expect = 1.2e-04 Identity = 19/21 (90.48%), Postives = 20/21 (95.24%), Query Frame = 0
Query: 1 ERNAHNFPLDLVAVEVPSING 22
ERNAHNFPLDL A+EVPSING
Sbjct: 333 ERNAHNFPLDLAALEVPSING 353
BLAST of MS022069 vs. ExPASy Swiss-Prot
Match: P05337 (Photosystem II protein D1 OS=Hordeum vulgare OX=4513 GN=psbA PE=3 SV=1) HSP 1 Score: 45.1 bits (105), Expect = 1.2e-04 Identity = 19/21 (90.48%), Postives = 20/21 (95.24%), Query Frame = 0
Query: 1 ERNAHNFPLDLVAVEVPSING 22
ERNAHNFPLDL AVEVP+ING
Sbjct: 333 ERNAHNFPLDLAAVEVPAING 353
BLAST of MS022069 vs. TAIR 10
Match: ATCG00020.1 (photosystem II reaction center protein A ) HSP 1 Score: 42.7 bits (99), Expect = 4.1e-05 Identity = 18/21 (85.71%), Postives = 18/21 (85.71%), Query Frame = 0
Query: 1 ERNAHNFPLDLVAVEVPSING 22
ERNAHNFPLDL AVE PS NG
Sbjct: 333 ERNAHNFPLDLAAVEAPSTNG 353
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
|---|
| Q2QDA8 | 5.3e-05 | 95.24 | Photosystem II protein D1 OS=Cucumis sativus OX=3659 GN=psbA PE=3 SV=1 | [more] |
| P10510 | 5.3e-05 | 95.24 | Photosystem II protein D1 OS=Secale cereale OX=4550 GN=psbA PE=1 SV=3 | [more] |
| P12463 | 5.3e-05 | 95.24 | Photosystem II protein D1 OS=Triticum aestivum OX=4565 GN=psbA PE=3 SV=2 | [more] |
| A1E9Y8 | 1.2e-04 | 90.48 | Photosystem II protein D1 OS=Agrostis stolonifera OX=63632 GN=psbA PE=3 SV=1 | [more] |
| P05337 | 1.2e-04 | 90.48 | Photosystem II protein D1 OS=Hordeum vulgare OX=4513 GN=psbA PE=3 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
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| ATCG00020.1 | 4.1e-05 | 85.71 | photosystem II reaction center protein A | [more] |
Relationships
The following mRNA feature(s) are a part of this gene:
| Feature Name | Unique Name | Type |
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| MS022069.1 | MS022069.1 | mRNA |
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