MS022066 (gene) Bitter gourd (TR) v1

Overview


Name	MS022066
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic
Location	scaffold47: 439994 .. 440178 (-)
RNA-Seq Expression	MS022066
Synteny	MS022066

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GACCCTCTCCAGTACGGGAAGATCGGAAGATATTATGCACAGCTTAGAGTATGTTGATTTTAGATCCCGAGACCGGAGAGTACAGTGCAGAGAAAACACCGAGTTATGGGAAGGACAAATTGGAAGACTTCTTTGAAAGGGTCCTCGGGGAAGGGATGGCTGGTCAAGAATTAGGCGAACAGACG

mRNA sequence

GACCCTCTCCAGTACGGGAAGATCGGAAGATATTATGCACAGAGTATGTTGATTTTAGATCCCGAGACCGGAGAGTACAGTGCAGAGAAAACACCGAGTTATGGGAAGGACAAATTGGAAGACTTCTTTGAAAGGGTCCTCGGGGAAGGGATGGCTGGTCAAGAATTAGGCGAACAGACG

Coding sequence (CDS)

GACCCTCTCCAGTACGGGAAGATCGGAAGATATTATGCACAGAGTATGTTGATTTTAGATCCCGAGACCGGAGAGTACAGTGCAGAGAAAACACCGAGTTATGGGAAGGACAAATTGGAAGACTTCTTTGAAAGGGTCCTCGGGGAAGGGATGGCTGGTCAAGAATTAGGCGAACAGACG

Protein sequence

DPLQYGKIGRYYAQSMLILDPETGEYSAEKTPSYGKDKLEDFFERVLGEGMAGQELGEQT

Homology

[Close]

BLAST of MS022066 vs. NCBI nr
Match: XP_038877599.1 (divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic [Benincasa hispida])

HSP 1 Score: 109.0 bits (271), Expect = 1.4e-20
Identity = 53/61 (86.89%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1   DPLQYGKIGRYY-AQSMLILDPETGEYSAEKTPSYGKDKLEDFFERVLGEGMAGQELGEQ 60
           D  +YGKIGRYY A+SML+LDPETGEYSAEKTPSYGKD LEDFFERVL EGMAGQELGEQ
Sbjct: 357 DAAEYGKIGRYYAAESMLLLDPETGEYSAEKTPSYGKDTLEDFFERVLREGMAGQELGEQ 416

[Close]

BLAST of MS022066 vs. NCBI nr
Match: KAG6597493.1 (Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 108.2 bits (269), Expect = 2.5e-20
Identity = 53/61 (86.89%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1   DPLQYGKIGRYY-AQSMLILDPETGEYSAEKTPSYGKDKLEDFFERVLGEGMAGQELGEQ 60
           D  +YGKIGRYY A+SMLILDPETGEYSAEKTPSYGKD LEDFFERVL EGMAGQELGE+
Sbjct: 99  DAAEYGKIGRYYAAESMLILDPETGEYSAEKTPSYGKDTLEDFFERVLREGMAGQELGER 158

[Close]

BLAST of MS022066 vs. NCBI nr
Match: KAG7028953.1 (Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 108.2 bits (269), Expect = 2.5e-20
Identity = 53/61 (86.89%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1   DPLQYGKIGRYY-AQSMLILDPETGEYSAEKTPSYGKDKLEDFFERVLGEGMAGQELGEQ 60
           D  +YGKIGRYY A+SMLILDPETGEYSAEKTPSYGKD LEDFFERVL EGMAGQELGE+
Sbjct: 231 DAAEYGKIGRYYAAESMLILDPETGEYSAEKTPSYGKDTLEDFFERVLREGMAGQELGER 290

[Close]

BLAST of MS022066 vs. NCBI nr
Match: XP_023528868.1 (divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023528869.1 divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 107.8 bits (268), Expect = 3.2e-20
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1   DPLQYGKIGRYY-AQSMLILDPETGEYSAEKTPSYGKDKLEDFFERVLGEGMAGQELGEQ 60
           D  +YGKIGRYY A+SMLILDPETGEYSAEKTPSYG D LEDFFERVL EGMAGQELGEQ
Sbjct: 359 DAAEYGKIGRYYAAESMLILDPETGEYSAEKTPSYGNDTLEDFFERVLREGMAGQELGEQ 418

[Close]

BLAST of MS022066 vs. NCBI nr
Match: KAG6582241.1 (Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 107.8 bits (268), Expect = 3.2e-20
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1   DPLQYGKIGRYY-AQSMLILDPETGEYSAEKTPSYGKDKLEDFFERVLGEGMAGQELGEQ 60
           D  +YGKIGRYY A+SMLILDPETGEYSAEKTPSYG D LEDFFERVL EGMAGQELGEQ
Sbjct: 359 DAAEYGKIGRYYAAESMLILDPETGEYSAEKTPSYGNDTLEDFFERVLREGMAGQELGEQ 418

[Close]

BLAST of MS022066 vs. ExPASy Swiss-Prot
Match: J9RYI6 (Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic OS=Cucumis sativus OX=3659 GN=DVR PE=1 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 4.2e-23
Identity = 52/61 (85.25%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1   DPLQYGKIGRYY-AQSMLILDPETGEYSAEKTPSYGKDKLEDFFERVLGEGMAGQELGEQ 60
           D  +YGKIGRYY A+SMLILDPETGEYSA+KTPSYGKD LEDFFERVL EGMAGQELGEQ
Sbjct: 357 DAAEYGKIGRYYAAESMLILDPETGEYSADKTPSYGKDTLEDFFERVLSEGMAGQELGEQ 416

[Close]

BLAST of MS022066 vs. ExPASy Swiss-Prot
Match: B6SZW0 (Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic OS=Zea mays OX=4577 GN=DVR PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 5.1e-21
Identity = 48/61 (78.69%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 1   DPLQYGKIGRYYA-QSMLILDPETGEYSAEKTPSYGKDKLEDFFERVLGEGMAGQELGEQ 60
           D  ++GKIGRYYA +SML+LDPETGEYS EKTPSYGKD LE FF+RV+ EGMAGQELGEQ
Sbjct: 339 DAAEFGKIGRYYASESMLLLDPETGEYSDEKTPSYGKDTLEQFFQRVIREGMAGQELGEQ 398

[Close]

BLAST of MS022066 vs. ExPASy Swiss-Prot
Match: Q1H537 (Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DVR PE=1 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 4.4e-20
Identity = 47/57 (82.46%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 4   QYGKIGRYY-AQSMLILDPETGEYSAEKTPSYGKDKLEDFFERVLGEGMAGQELGEQ 60
           ++GKIGRYY A+SMLILDPETGEYS EKTPSYGKD LEDFF +V+ EGMAGQELGEQ
Sbjct: 359 EFGKIGRYYAAESMLILDPETGEYSEEKTPSYGKDTLEDFFAKVIREGMAGQELGEQ 415

[Close]

BLAST of MS022066 vs. ExPASy Swiss-Prot
Match: D5L1S4 (Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=DVR PE=1 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 7.4e-20
Identity = 46/61 (75.41%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 1   DPLQYGKIGRYYA-QSMLILDPETGEYSAEKTPSYGKDKLEDFFERVLGEGMAGQELGEQ 60
           D  ++GKIGRYYA +SML+LDP+TGEYS E TPSYG D LE FFERV+ EGMAGQELGEQ
Sbjct: 343 DAAEFGKIGRYYASESMLVLDPDTGEYSDEMTPSYGSDTLEQFFERVIREGMAGQELGEQ 402

[Close]

BLAST of MS022066 vs. ExPASy Swiss-Prot
Match: Q10LH0 (Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=DVR PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 7.4e-20
Identity = 46/61 (75.41%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 1   DPLQYGKIGRYYA-QSMLILDPETGEYSAEKTPSYGKDKLEDFFERVLGEGMAGQELGEQ 60
           D  ++GKIGRYYA +SML+LDP+TGEYS E TPSYG D LE FFERV+ EGMAGQELGEQ
Sbjct: 343 DAAEFGKIGRYYASESMLVLDPDTGEYSDEMTPSYGSDTLEQFFERVIREGMAGQELGEQ 402

[Close]

BLAST of MS022066 vs. ExPASy TrEMBL
Match: A0A6J1IUD4 (Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111479393 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.6e-20
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1   DPLQYGKIGRYY-AQSMLILDPETGEYSAEKTPSYGKDKLEDFFERVLGEGMAGQELGEQ 60
           D  +YGKIGRYY A+SMLILDPETGEYSAEKTPSYG D LEDFFERVL EGMAGQELGEQ
Sbjct: 359 DAAEYGKIGRYYAAESMLILDPETGEYSAEKTPSYGNDTLEDFFERVLREGMAGQELGEQ 418

[Close]

BLAST of MS022066 vs. ExPASy TrEMBL
Match: A0A6J1GW37 (Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111458024 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.6e-20
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1   DPLQYGKIGRYY-AQSMLILDPETGEYSAEKTPSYGKDKLEDFFERVLGEGMAGQELGEQ 60
           D  +YGKIGRYY A+SMLILDPETGEYSAEKTPSYG D LEDFFERVL EGMAGQELGEQ
Sbjct: 359 DAAEYGKIGRYYAAESMLILDPETGEYSAEKTPSYGNDTLEDFFERVLREGMAGQELGEQ 418

[Close]

BLAST of MS022066 vs. ExPASy TrEMBL
Match: A0A0A0L5R4 (Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_3G151460 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.6e-20
Identity = 52/61 (85.25%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1   DPLQYGKIGRYY-AQSMLILDPETGEYSAEKTPSYGKDKLEDFFERVLGEGMAGQELGEQ 60
           D  +YGKIGRYY A+SMLILDPETGEYSA+KTPSYGKD LEDFFERVL EGMAGQELGEQ
Sbjct: 357 DAAEYGKIGRYYAAESMLILDPETGEYSADKTPSYGKDTLEDFFERVLSEGMAGQELGEQ 416

[Close]

BLAST of MS022066 vs. ExPASy TrEMBL
Match: A0A2P5E3Z7 (Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic OS=Parasponia andersonii OX=3476 GN=PanWU01x14_007170 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 3.5e-20
Identity = 52/61 (85.25%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1   DPLQYGKIGRYY-AQSMLILDPETGEYSAEKTPSYGKDKLEDFFERVLGEGMAGQELGEQ 60
           D  ++GKIGRYY A+SMLILDPETGEYSAEKTPSYGKD LE+FFERVL EGMAGQELGEQ
Sbjct: 357 DAAEFGKIGRYYAAESMLILDPETGEYSAEKTPSYGKDTLEEFFERVLREGMAGQELGEQ 416

[Close]

BLAST of MS022066 vs. ExPASy TrEMBL
Match: A0A6J1C850 (Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111009253 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 3.5e-20
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1   DPLQYGKIGRYY-AQSMLILDPETGEYSAEKTPSYGKDKLEDFFERVLGEGMAGQELGEQ 60
           D  +YGKIGRYY A+SMLILD ETGEYSAEKTPSYGKD LEDFFERVL EGMAGQELGEQ
Sbjct: 357 DAAEYGKIGRYYAAESMLILDTETGEYSAEKTPSYGKDTLEDFFERVLREGMAGQELGEQ 416

[Close]

BLAST of MS022066 vs. TAIR 10
Match: AT5G18660.1 (NAD(P)-binding Rossmann-fold superfamily protein )

HSP 1 Score: 97.8 bits (242), Expect = 3.1e-21
Identity = 47/57 (82.46%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 4   QYGKIGRYY-AQSMLILDPETGEYSAEKTPSYGKDKLEDFFERVLGEGMAGQELGEQ 60
           ++GKIGRYY A+SMLILDPETGEYS EKTPSYGKD LEDFF +V+ EGMAGQELGEQ
Sbjct: 359 EFGKIGRYYAAESMLILDPETGEYSEEKTPSYGKDTLEDFFAKVIREGMAGQELGEQ 415

The following BLAST results are available for this feature:

BLAST of MS022066 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877599.1	1.4e-20	86.89	divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic [Benincasa hispida]	[more]
KAG6597493.1	2.5e-20	86.89	Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic, partial [Cucurbita ar...	[more]
KAG7028953.1	2.5e-20	86.89	Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic, partial [Cucurbita ar...	[more]
XP_023528868.1	3.2e-20	86.89	divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic [Cucurbita pepo subsp....	[more]
KAG6582241.1	3.2e-20	86.89	Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic, partial [Cucurbita ar...	[more]

BLAST of MS022066 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
J9RYI6	4.2e-23	85.25	Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic OS=Cucumis sativus OX=...	[more]
B6SZW0	5.1e-21	78.69	Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic OS=Zea mays OX=4577 GN...	[more]
Q1H537	4.4e-20	82.46	Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic OS=Arabidopsis thalian...	[more]
D5L1S4	7.4e-20	75.41	Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic OS=Oryza sativa subsp....	[more]
Q10LH0	7.4e-20	75.41	Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic OS=Oryza sativa subsp....	[more]

BLAST of MS022066 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IUD4	1.6e-20	86.89	Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic OS=Cucurbita maxima OX...	[more]
A0A6J1GW37	1.6e-20	86.89	Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic OS=Cucurbita moschata ...	[more]
A0A0A0L5R4	1.6e-20	85.25	Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic OS=Cucumis sativus OX=...	[more]
A0A2P5E3Z7	3.5e-20	85.25	Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic OS=Parasponia anderson...	[more]
A0A6J1C850	3.5e-20	86.89	Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic OS=Momordica charantia...	[more]

BLAST of MS022066 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G18660.1	3.1e-21	82.46	NAD(P)-binding Rossmann-fold superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044201	Divinyl reductase-like	PANTHER	PTHR47378	DIVINYL CHLOROPHYLLIDE A 8-VINYL-REDUCTASE, CHLOROPLASTIC	coord: 2..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS022066.1	MS022066.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016491	oxidoreductase activity