MS022033 (gene) Bitter gourd (TR) v1

Overview


Name	MS022033
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold47: 155636 .. 155965 (+)
RNA-Seq Expression	MS022033
Synteny	MS022033

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGCTTATAAATCCTGTTAATATCAGGATTCCAGCAAGTATCCAACTGAATTGCAGGTTGGCGAGCGCCCGTGCCCTCATATCAGCTTCTGGAGAGGCACAGATGACTGCTCCAAGCATTTCGTCTTTGCCTTTCTTCACGATCCTCATGCTGCAGCCCTTAGGAACCAGGTCTGGAACCCATAGCATAAACCCCATGTCCATAAACCAGCACCCTTGCAAAACAACCAACAATGAAAGAACAAGAGCTGCAGGGAAGCTGGTAGGACAACAAGTAGCTACGAGTACCGACACGAGAGACGCGAACACTATGAGCTGCAGGAGCCAATGG

mRNA sequence

AGGCTTATAAATCCTGTTAATATCAGGATTCCAGCAAGTATCCAACTGAATTGCAGGTTGGCGAGCGCCCGTGCCCTCATATCAGCTTCTGGAGAGGCACAGATGACTGCTCCAAGCATTTCGTCTTTGCCTTTCTTCACGATCCTCATGCTGCAGCCCTTAGGAACCAGGTCTGGAACCCATAGCATAAACCCCATGTCCATAAACCAGCACCCTTGCAAAACAACCAACAATGAAAGAACAAGAGCTGCAGGGAAGCTGGTAGGACAACAAGTAGCTACGAGTACCGACACGAGAGACGCGAACACTATGAGCTGCAGGAGCCAATGG

Coding sequence (CDS)

AGGCTTATAAATCCTGTTAATATCAGGATTCCAGCAAGTATCCAACTGAATTGCAGGTTGGCGAGCGCCCGTGCCCTCATATCAGCTTCTGGAGAGGCACAGATGACTGCTCCAAGCATTTCGTCTTTGCCTTTCTTCACGATCCTCATGCTGCAGCCCTTAGGAACCAGGTCTGGAACCCATAGCATAAACCCCATGTCCATAAACCAGCACCCTTGCAAAACAACCAACAATGAAAGAACAAGAGCTGCAGGGAAGCTGGTAGGACAACAAGTAGCTACGAGTACCGACACGAGAGACGCGAACACTATGAGCTGCAGGAGCCAATGG

Protein sequence

RLINPVNIRIPASIQLNCRLASARALISASGEAQMTAPSISSLPFFTILMLQPLGTRSGTHSINPMSINQHPCKTTNNERTRAAGKLVGQQVATSTDTRDANTMSCRSQW

Homology

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BLAST of MS022033 vs. ExPASy TrEMBL
Match: A0A0A0K847 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G075030 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.2e-39
Identity = 90/109 (82.57%), Postives = 97/109 (88.99%), Query Frame = 0


Query: 2   LINPVNIRIPASIQLNCRLASARALISASGEAQMTAPSISSLPFFTILMLQPLGTRSGTH 61
           LI PVNIRIPASIQLN RLASARALISAS EAQMTAPSISSLP    L+LQPLGT+ GTH
Sbjct: 2   LIIPVNIRIPASIQLNWRLASARALISASSEAQMTAPSISSLPLSITLILQPLGTKFGTH 61

Query: 62  SINPMSINQHPCKTTNNERTRAAGKLVGQQVATSTDTRDANTMSCRSQW 111
           S+NPM INQHPCKTTNNER RAAGKL+GQQ AT TDTRDANT++C+SQW
Sbjct: 62  SMNPMFINQHPCKTTNNERIRAAGKLLGQQAATITDTRDANTITCKSQW 110

The following BLAST results are available for this feature:

BLAST of MS022033 vs.


Match Name	E-value	Identity	Description

BLAST of MS022033 vs.


Match Name	E-value	Identity	Description

BLAST of MS022033 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K847	1.2e-39	82.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G075030 PE=4 SV=1	[more]

BLAST of MS022033 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS022033.1	MS022033.1	mRNA