MS021996 (gene) Bitter gourd (TR) v1

Overview
NameMS021996
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionR3H domain containing protein
Locationscaffold110: 960522 .. 963990 (+)
RNA-Seq ExpressionMS021996
SyntenyMS021996
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTGACTCCTCAGGTGGAGGAGTTGGCCTTTCTTGTTAAGGACAACCTCCCTAGCAAGCATCTTATTCTATCCATGGAAGAAACCTTTGTCAACTTTCTTCAGGATGAAACCAGGTAATATGATGATGGTTAAATGATGTTAGTTATTGATTTTAATGATATTCTAAACCCAATGGTCTAAGAGATAAGATAAGCGAAAGGTTATGGGTTCAAATCATGGTAGCAATCTGTTTAGAATGCTAAAATATCATATGAGTTTTTTAAAGTCAAAAGTTGTAGGGTTAAGTTGTCATCTGGTGAGATTAGTTACATGAATAAGAAGCAATTGTTAAAAACAGTTCAAAACCTTATTTGGAAGATACCAAGGAAATGCAGAAATTATGAAAAGTTTCAAGTTACGTCTTGGGAAAATGGGCTGCCCTTCGAATGAATTTGTATAAGAACATATGGGAACAGAAAGAAGGTCATTCATCCCTACTGTGCTATCTTTTTTTCCAATGTTTGGTGTAGTTGTTTTCAATTTTCACATTATTGTTCTTGCCTGTGGGAGAATCTCTTGCAAATTTACATTTCATTGTTCTTTAACCTGTTGCTTGTATGGTGATCCCTAACTTCAAATAATATTTTTGATAGCAGTTTAGATGGAATCTTGGAGTTGGAACCAATGGATTCATACAACCGTCTTCTATTACATCGCCTTGCTGATATTTTTGGGTACTTCTTTTTTTCCGCAGTTTATATTATTTGTTTGTTATTTGTTCTAGTTCTTTGTGAGGCCTGAATTCTTAATTTTCTATGTCGAACTTCATTCTGACCTTCCTAAGTTCGTACTCAATAATATTCTTTCCCACTCCTCTCTCAGATTTGCCCATGTATCAGTTGGTGAAGGTGTTGATAGACACTTGGTTCTGGAGCGGTGCCCAGAGTCATCAATGTATGTGAGGAATTCCAAACCTGTCTTCTTTTTAATTATAGCTTAATATTTTCATATTGTAAAATGTTGTTGGTAAAGCATTTTATGGTGAACTGCTAGTTTAGCGATAGAGGGACGTGTATTAGTTAAAACATTAAATCCCCGATATTCAAGGAGTTCGTAAGAAGACCTGTTGATGTATATTGAAGCTGTTTCACTGGAATAAAATCATTGCAGTGTACTAATATGATATTGAAGCAAGGAATTTTAACAATTCTTGCGTCCTTCATTGTTTCCTTCTCATTTTAAGGAAAGTATAAAAGGACACATTGTGATAATTGAATAAACAGAAGCCTCATTTTTTTCTATGAACGTCTTCTCCATAGAAAAAGGTTTTACTTTGGTTTGGAGTTGGGCTTTTATGTTCTGTTGTTATTTACAGTTTCTAAATTATGATTCAAAGCAACGTGTCCTTTGTTCCTTTGATCGGCTCCACTAGGGACCCATCTTTGTTTTGAGTTTAGTCTATATAGGAGTGAACAAAATCCAAGCTTTTCCCTGGCTATCCTTGAACCCAAGTATGGTTGATGTACCACCCTCTCTCCCTTGCTATTGTATCGAGCTCTTGACCGCTGCTCTCATTTCAAATGCTACTGGGTTTCCTCCATATGGCTAATTAGAAAAGTAGACTTCTGGAGGCTATCCTTGAACCCAAGTAGGGTTGATGTACCAGTACCACCCTCTCTCCCTTGCTATTGTATCGAGCTCTCGACCGCTGCTCTCATTCCAAATGCTACTGGGTTTCCTCCATATGGCTAATTAGAAAAGTAGACTTCTGTATGTCCGCTTGGAGCGAGAAATGTTGGATGGGCACACAACATTAGCTATATGGATAGATGGAGTTCTTGTAATTCTTATCAATTAAGTTTTATTTATGACAATAAACACTGTCATCTATTTATTCATCATTGTTCAAACTTCAAGTATTACTTCAAGTATTTCTTAGCTGTCGTGTGATCCAATCTTTATTTCATCTTTTCAAAGAAGGGGAAGAAGCCAAATCATATAACTTAAAGTCAAACAAGGCTTCTTAAATTTACAAACTACGGAACCGTAACGTCATGGCAGGACATTGTGATACTAATAAAGGTCATTTGTTGATTAGCTTATTTATGTTTATTGCAGACCGTCCATTCTTGTGAGTGATATTCTGTGGGAGTATGATGAGCCTCAAATGTCAACAATACCACACCAACTATTGAAGAGAAAGGAAAACTCTCCTGGTACACTTTCCAATTATTTCATTAAAGTACTGTACACTATGTGAGTAACTAATATCCATTTAATATTGGTGATCGTGATATGTCATTAGAATTACAGTATTTTTTTTCTTTGGAATAAGAAAATCTGCTTTCATCTGGAAGAAACAAACGGAAGAATACAAGAGGGCATAAAAAAAAAGTTCAACTAGAGGGACGCCCAACCCAAAACTAGCTAAACAAAAAAGGGGTTAATTAGTACCTGCAATACTTTCCAATTTGTGCCTTCGGTTACAATTTGATCATAGGAATGTTCACATATGTATTTCTAATGGACTTGAGGCCACTTGAATGTAGTAGAGGGGATAGTATGAATGTTTAATAAATATTAATTTGTGAAAGCGCCCTAATGGGCTCTTACTCTTTTCATTTCCATTTCTAAAGACATCAAAGGGGGAATAGAGCACTATGGAGAAACGTAGCTGTAGGGTAGAATAAGAGGTCTTCTTGATAAGATTTGATAGGGATTCTGGATTTGAAGATTGAAGTTTGAGGAGGGAAGGAACTATAATAGAATGAGCATGTAAATATCTCTCTTTTGAAAGAAGAATGTTGTTCCATTTTGCACGTGTATGAGGAAGTCCATTTAATGCTGGTTCATCATATTAGAAGTTTCCATAAATATGCTGATTACCTATTCATGGTACTTGCAGATTTACTTTTAAGAGATTGTAAGAAATCAAATTGCCTATATTTGATGTTTTATTTCAGTGAGTGTGACAAAAGCACCTTGTCAACCTTCACTTGAAGAGAGACAAACAGCCTATCTGGCTGTTCGCAAGCGAATTTTCATGATGCACACAGGAGAAGATAGCGAACCTGTGAAGCCAAAGCCACGCTGTGATCCAGTGGTTGCACGCCGCATGATTGCACATGCACTGGGCCAGAGAATAAATTCGTTTTCTGAGGATACAACTTACCATTGCAAAGAGCAAGGAGGTGCAGTTGATAATAATGCACACATCCAATCAAATGATTCAAAGGAGCCTGAGTCTACTGTGAAAGCTGTTAAGAAAACCATTTCACGGTCAGATCAACGTGTGAACTCAAAGAACAGAGGGGATAAGAATTGTAATCCGATTGTGTCGTCGGCAAGGGAAAGAAATGCTGACAAGATTTCTCCGAAGGCAAGTTGTATCGACAATGACTACTTGAAGAGGGAGCATTTAGGAGCTGCAAAGAGGATGTTTTCTCAGGCTTTGGGCAAGCACTGTCGAAAGAACGAATCATTTCAAACT

mRNA sequence

CTGACTCCTCAGGTGGAGGAGTTGGCCTTTCTTGTTAAGGACAACCTCCCTAGCAAGCATCTTATTCTATCCATGGAAGAAACCTTTGTCAACTTTCTTCAGGATGAAACCAGTTTAGATGGAATCTTGGAGTTGGAACCAATGGATTCATACAACCGTCTTCTATTACATCGCCTTGCTGATATTTTTGGATTTGCCCATGTATCAGTTGGTGAAGGTGTTGATAGACACTTGGTTCTGGAGCGGTGCCCAGAGTCATCAATACCGTCCATTCTTGTGAGTGATATTCTGTGGGAGTATGATGAGCCTCAAATGTCAACAATACCACACCAACTATTGAAGAGAAAGGAAAACTCTCCTGTGAGTGTGACAAAAGCACCTTGTCAACCTTCACTTGAAGAGAGACAAACAGCCTATCTGGCTGTTCGCAAGCGAATTTTCATGATGCACACAGGAGAAGATAGCGAACCTGTGAAGCCAAAGCCACGCTGTGATCCAGTGGTTGCACGCCGCATGATTGCACATGCACTGGGCCAGAGAATAAATTCGTTTTCTGAGGATACAACTTACCATTGCAAAGAGCAAGGAGGTGCAGTTGATAATAATGCACACATCCAATCAAATGATTCAAAGGAGCCTGAGTCTACTGTGAAAGCTGTTAAGAAAACCATTTCACGGTCAGATCAACGTGTGAACTCAAAGAACAGAGGGGATAAGAATTGTAATCCGATTGTGTCGTCGGCAAGGGAAAGAAATGCTGACAAGATTTCTCCGAAGGCAAGTTGTATCGACAATGACTACTTGAAGAGGGAGCATTTAGGAGCTGCAAAGAGGATGTTTTCTCAGGCTTTGGGCAAGCACTGTCGAAAGAACGAATCATTTCAAACT

Coding sequence (CDS)

CTGACTCCTCAGGTGGAGGAGTTGGCCTTTCTTGTTAAGGACAACCTCCCTAGCAAGCATCTTATTCTATCCATGGAAGAAACCTTTGTCAACTTTCTTCAGGATGAAACCAGTTTAGATGGAATCTTGGAGTTGGAACCAATGGATTCATACAACCGTCTTCTATTACATCGCCTTGCTGATATTTTTGGATTTGCCCATGTATCAGTTGGTGAAGGTGTTGATAGACACTTGGTTCTGGAGCGGTGCCCAGAGTCATCAATACCGTCCATTCTTGTGAGTGATATTCTGTGGGAGTATGATGAGCCTCAAATGTCAACAATACCACACCAACTATTGAAGAGAAAGGAAAACTCTCCTGTGAGTGTGACAAAAGCACCTTGTCAACCTTCACTTGAAGAGAGACAAACAGCCTATCTGGCTGTTCGCAAGCGAATTTTCATGATGCACACAGGAGAAGATAGCGAACCTGTGAAGCCAAAGCCACGCTGTGATCCAGTGGTTGCACGCCGCATGATTGCACATGCACTGGGCCAGAGAATAAATTCGTTTTCTGAGGATACAACTTACCATTGCAAAGAGCAAGGAGGTGCAGTTGATAATAATGCACACATCCAATCAAATGATTCAAAGGAGCCTGAGTCTACTGTGAAAGCTGTTAAGAAAACCATTTCACGGTCAGATCAACGTGTGAACTCAAAGAACAGAGGGGATAAGAATTGTAATCCGATTGTGTCGTCGGCAAGGGAAAGAAATGCTGACAAGATTTCTCCGAAGGCAAGTTGTATCGACAATGACTACTTGAAGAGGGAGCATTTAGGAGCTGCAAAGAGGATGTTTTCTCAGGCTTTGGGCAAGCACTGTCGAAAGAACGAATCATTTCAAACT

Protein sequence

LTPQVEELAFLVKDNLPSKHLILSMEETFVNFLQDETSLDGILELEPMDSYNRLLLHRLADIFGFAHVSVGEGVDRHLVLERCPESSIPSILVSDILWEYDEPQMSTIPHQLLKRKENSPVSVTKAPCQPSLEERQTAYLAVRKRIFMMHTGEDSEPVKPKPRCDPVVARRMIAHALGQRINSFSEDTTYHCKEQGGAVDNNAHIQSNDSKEPESTVKAVKKTISRSDQRVNSKNRGDKNCNPIVSSARERNADKISPKASCIDNDYLKREHLGAAKRMFSQALGKHCRKNESFQT
Homology
BLAST of MS021996 vs. NCBI nr
Match: XP_022149930.1 (uncharacterized protein LOC111018224 isoform X2 [Momordica charantia])

HSP 1 Score: 578.9 bits (1491), Expect = 2.4e-161
Identity = 290/292 (99.32%), Postives = 291/292 (99.66%), Query Frame = 0

Query: 5   VEELAFLVKDNLPSKHLILSMEETFVNFLQDETSLDGILELEPMDSYNRLLLHRLADIFG 64
           VEELAFLVKDNLPSKHLILSMEETFVNFLQDETSLDGILELEPMDSYNRLLLHRLADIFG
Sbjct: 7   VEELAFLVKDNLPSKHLILSMEETFVNFLQDETSLDGILELEPMDSYNRLLLHRLADIFG 66

Query: 65  FAHVSVGEGVDRHLVLERCPESSIPSILVSDILWEYDEPQMSTIPHQLLKRKENSPVSVT 124
           FAHVSVGEGVDRHLVLERCPESSIPSILVSDILWE+DEPQMSTIPHQLLKRKENSPVSVT
Sbjct: 67  FAHVSVGEGVDRHLVLERCPESSIPSILVSDILWEFDEPQMSTIPHQLLKRKENSPVSVT 126

Query: 125 KAPCQPSLEERQTAYLAVRKRIFMMHTGEDSEPVKPKPRCDPVVARRMIAHALGQRINSF 184
           KAPCQPSLEERQTAYLAVRKRIFMMHTGEDSEPVKPKPRCDPVVARRMIAHALGQRINSF
Sbjct: 127 KAPCQPSLEERQTAYLAVRKRIFMMHTGEDSEPVKPKPRCDPVVARRMIAHALGQRINSF 186

Query: 185 SEDTTYHCKEQGGAVDNNAHIQSNDSKEPESTVKAVKKTISRSDQRVNSKNRGDKNCNPI 244
           SEDTTYHCKEQGGAVDNNAHIQSNDSKEPESTVKAVKKTISRSDQRVN KNRGDKNCNPI
Sbjct: 187 SEDTTYHCKEQGGAVDNNAHIQSNDSKEPESTVKAVKKTISRSDQRVNLKNRGDKNCNPI 246

Query: 245 VSSARERNADKISPKASCIDNDYLKREHLGAAKRMFSQALGKHCRKNESFQT 297
           VSSARERNADKISPKASCIDNDYLKREHLGAAKRMFSQALGKHCRKNESFQT
Sbjct: 247 VSSARERNADKISPKASCIDNDYLKREHLGAAKRMFSQALGKHCRKNESFQT 298

BLAST of MS021996 vs. NCBI nr
Match: XP_022149929.1 (uncharacterized protein LOC111018224 isoform X1 [Momordica charantia])

HSP 1 Score: 574.3 bits (1479), Expect = 6.0e-160
Identity = 290/293 (98.98%), Postives = 291/293 (99.32%), Query Frame = 0

Query: 5   VEELAFLVKDNLPSKHLILSMEETFVNFLQDET-SLDGILELEPMDSYNRLLLHRLADIF 64
           VEELAFLVKDNLPSKHLILSMEETFVNFLQDET SLDGILELEPMDSYNRLLLHRLADIF
Sbjct: 7   VEELAFLVKDNLPSKHLILSMEETFVNFLQDETSSLDGILELEPMDSYNRLLLHRLADIF 66

Query: 65  GFAHVSVGEGVDRHLVLERCPESSIPSILVSDILWEYDEPQMSTIPHQLLKRKENSPVSV 124
           GFAHVSVGEGVDRHLVLERCPESSIPSILVSDILWE+DEPQMSTIPHQLLKRKENSPVSV
Sbjct: 67  GFAHVSVGEGVDRHLVLERCPESSIPSILVSDILWEFDEPQMSTIPHQLLKRKENSPVSV 126

Query: 125 TKAPCQPSLEERQTAYLAVRKRIFMMHTGEDSEPVKPKPRCDPVVARRMIAHALGQRINS 184
           TKAPCQPSLEERQTAYLAVRKRIFMMHTGEDSEPVKPKPRCDPVVARRMIAHALGQRINS
Sbjct: 127 TKAPCQPSLEERQTAYLAVRKRIFMMHTGEDSEPVKPKPRCDPVVARRMIAHALGQRINS 186

Query: 185 FSEDTTYHCKEQGGAVDNNAHIQSNDSKEPESTVKAVKKTISRSDQRVNSKNRGDKNCNP 244
           FSEDTTYHCKEQGGAVDNNAHIQSNDSKEPESTVKAVKKTISRSDQRVN KNRGDKNCNP
Sbjct: 187 FSEDTTYHCKEQGGAVDNNAHIQSNDSKEPESTVKAVKKTISRSDQRVNLKNRGDKNCNP 246

Query: 245 IVSSARERNADKISPKASCIDNDYLKREHLGAAKRMFSQALGKHCRKNESFQT 297
           IVSSARERNADKISPKASCIDNDYLKREHLGAAKRMFSQALGKHCRKNESFQT
Sbjct: 247 IVSSARERNADKISPKASCIDNDYLKREHLGAAKRMFSQALGKHCRKNESFQT 299

BLAST of MS021996 vs. NCBI nr
Match: KAG6586140.1 (TATA box-binding protein-associated factor RNA polymerase I subunit B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 450.7 bits (1158), Expect = 1.0e-122
Identity = 235/300 (78.33%), Postives = 256/300 (85.33%), Query Frame = 0

Query: 4    QVEELAFLVKDNLPSKHLILSMEETFVNFLQDETSLDGILELEPMDSYNRLLLHRLADIF 63
            +VEELAFLVK+NLPSKHLILSME+ FV FLQDE S DGILELEPMDSYNRLLLHRLADIF
Sbjct: 706  RVEELAFLVKENLPSKHLILSMEDVFVKFLQDEISSDGILELEPMDSYNRLLLHRLADIF 765

Query: 64   GFAHVSVGEGVDRHLVLERCPESSIPSILVSDILWEYDEPQMSTIPHQLLKRKENSPVSV 123
            GFAHVSVGEGVDRHLVLERCPESS+PSILVSDILWEYDEPQ+STIPHQLL+RKENS VS+
Sbjct: 766  GFAHVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRKENSSVSL 825

Query: 124  TKAPCQPSLEERQTAYLAVRKRIFMMHTGEDSEPVKPKPRCDPVVARRMIAHALGQRINS 183
             K+P Q + EER+ AYLAVR+RIFMMH GEDSEP KPKPRCDPVVARRMIAHALG+RINS
Sbjct: 826  KKSPPQRTFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAHALGKRINS 885

Query: 184  FSEDTTYHCKEQGGAVDNNAHIQSNDSKEPESTVKAVKKTISRSDQRVNSKNRGDKNCNP 243
              E TT HCKEQ G+V NNAH+Q+N+ KEP+STV+ V KT  + DQ VNSKN   KN NP
Sbjct: 886  SPEATTNHCKEQ-GSVANNAHVQANELKEPDSTVEVVNKTKLQPDQCVNSKNEAGKNRNP 945

Query: 244  IVSSARERN-------ADKISPKASCIDNDYLKREHLGAAKRMFSQALGKHCRKNESFQT 297
            I SSAR  N       ADK SPKASC+DN+YLKREHLGAAKRMFSQALGK  RKNES  T
Sbjct: 946  IRSSARGSNSAAAKMKADKSSPKASCVDNEYLKREHLGAAKRMFSQALGKQSRKNESLPT 1004

BLAST of MS021996 vs. NCBI nr
Match: XP_022965481.1 (uncharacterized protein LOC111465372 isoform X1 [Cucurbita maxima] >XP_022965482.1 uncharacterized protein LOC111465372 isoform X1 [Cucurbita maxima])

HSP 1 Score: 449.1 bits (1154), Expect = 2.9e-122
Identity = 235/299 (78.60%), Postives = 256/299 (85.62%), Query Frame = 0

Query: 5   VEELAFLVKDNLPSKHLILSMEETFVNFLQDETSLDGILELEPMDSYNRLLLHRLADIFG 64
           VEELAFLVK+NLPSKHLILSME+ FV FLQDETS DGILELEPMDSYNRLLLHRLADIFG
Sbjct: 9   VEELAFLVKENLPSKHLILSMEDVFVKFLQDETSSDGILELEPMDSYNRLLLHRLADIFG 68

Query: 65  FAHVSVGEGVDRHLVLERCPESSIPSILVSDILWEYDEPQMSTIPHQLLKRKENSPVSVT 124
           FAHVSVGEG DRHLVLERCPESS+PSILVSDILWEYDEPQ+STIPHQLL+RKENS VS+ 
Sbjct: 69  FAHVSVGEGADRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRKENSSVSLE 128

Query: 125 KAPCQPSLEERQTAYLAVRKRIFMMHTGEDSEPVKPKPRCDPVVARRMIAHALGQRINSF 184
           K+P Q S EER+ AYLAVR+RIFMMH GEDSEP KPKPRCDPVVARRMIAHALG+RINS 
Sbjct: 129 KSPPQRSFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAHALGKRINSS 188

Query: 185 SEDTTYHCKEQGGAVDNNAHIQSNDSKEPESTVKAVKKTISRSDQRVNSKNRGDKNCNPI 244
            E TT HCKEQ G+V NNA++Q+N+ KEP+STV+ V KT  ++DQ VNSKN   KN NP 
Sbjct: 189 PEATTNHCKEQ-GSVANNAYVQANELKEPDSTVEVVNKTKLQTDQCVNSKNEVSKNRNPS 248

Query: 245 VSSARERN-------ADKISPKASCIDNDYLKREHLGAAKRMFSQALGKHCRKNESFQT 297
            SSAR  N       ADK SPKASC+DN+YLKREHLGAAKRMFSQALGK  RKNES QT
Sbjct: 249 RSSARGSNAAAAKMKADKSSPKASCVDNEYLKREHLGAAKRMFSQALGKQGRKNESLQT 306

BLAST of MS021996 vs. NCBI nr
Match: XP_022937642.1 (uncharacterized protein LOC111443986 isoform X1 [Cucurbita moschata])

HSP 1 Score: 448.0 bits (1151), Expect = 6.5e-122
Identity = 234/299 (78.26%), Postives = 254/299 (84.95%), Query Frame = 0

Query: 5   VEELAFLVKDNLPSKHLILSMEETFVNFLQDETSLDGILELEPMDSYNRLLLHRLADIFG 64
           VEELAFLVK+NLPSKHLILSME+ FV FLQDE S DGILELEPMDSYNRLLLHRLADIFG
Sbjct: 9   VEELAFLVKENLPSKHLILSMEDVFVKFLQDEISSDGILELEPMDSYNRLLLHRLADIFG 68

Query: 65  FAHVSVGEGVDRHLVLERCPESSIPSILVSDILWEYDEPQMSTIPHQLLKRKENSPVSVT 124
           FAHVSVGEGVDRHLVLERCPESS+PSILVSDILWEYDEPQ+STIPHQLL+RKENS VS+ 
Sbjct: 69  FAHVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRKENSSVSLK 128

Query: 125 KAPCQPSLEERQTAYLAVRKRIFMMHTGEDSEPVKPKPRCDPVVARRMIAHALGQRINSF 184
           K+P Q + EER+ AYLAVR+RIFMMH GEDSEP KPKPRCDPVVARRMIAHALG+RINS 
Sbjct: 129 KSPPQRTFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAHALGKRINSS 188

Query: 185 SEDTTYHCKEQGGAVDNNAHIQSNDSKEPESTVKAVKKTISRSDQRVNSKNRGDKNCNPI 244
            E TT HCKEQ G+V NNAH+Q+N+ KEP+STV+ V KT  + DQ VNSKN   KN NPI
Sbjct: 189 PEATTNHCKEQ-GSVANNAHVQANELKEPDSTVEVVNKTKLQPDQCVNSKNEAGKNRNPI 248

Query: 245 VSSARERN-------ADKISPKASCIDNDYLKREHLGAAKRMFSQALGKHCRKNESFQT 297
            SSAR  N       ADK SPKASC+DN+YL REHLGAAKRMFSQALGK  RKNES  T
Sbjct: 249 RSSARGSNSAAAKMKADKSSPKASCVDNEYLTREHLGAAKRMFSQALGKQSRKNESLPT 306

BLAST of MS021996 vs. ExPASy Swiss-Prot
Match: A0JNC2 (R3H domain-containing protein 2 OS=Bos taurus OX=9913 GN=R3HDM2 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.6e-06
Identity = 44/157 (28.03%), Postives = 75/157 (47.77%), Query Frame = 0

Query: 6   EELAFLVKDNLPSKHLILSMEETFVNFLQDETSLDGILELEPMDSYNRLLLHRLADIFGF 65
           E L   +K N   + ++L +E+  ++F+ D    +   +   M SY+R+LLHR+A  FG 
Sbjct: 156 EFLVNTLKKNPRDRMMLLKLEQEILDFINDNN--NQFKKFPQMTSYHRMLLHRVAAYFGM 215

Query: 66  AHVSVGEGVDRHLVLERCPESSIPSILVSDILWEYDEPQMSTIPHQLLKRKENS---PVS 125
            H     G  + +++ +   + IP    S+ +   DE         +LKR + S     +
Sbjct: 216 DHNVDQTG--KAVIINKTSNTRIPEQRFSEHI--KDEKNTEFQQRFILKRDDASMDRDDN 275

Query: 126 VTKAPCQ-----PSLEERQTAYLAVRKRIFMMHTGED 155
             + P Q      S+EER+  Y  VR+RIF   TG++
Sbjct: 276 QIRVPLQDGRRSKSIEEREEEYQRVRERIFARETGQN 306

BLAST of MS021996 vs. ExPASy Swiss-Prot
Match: Q80TM6 (R3H domain-containing protein 2 OS=Mus musculus OX=10090 GN=R3hdm2 PE=1 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 3.6e-06
Identity = 44/157 (28.03%), Postives = 75/157 (47.77%), Query Frame = 0

Query: 6   EELAFLVKDNLPSKHLILSMEETFVNFLQDETSLDGILELEPMDSYNRLLLHRLADIFGF 65
           E L   +K N   + ++L +E+  ++F+ D    +   +   M SY+R+LLHR+A  FG 
Sbjct: 156 EFLVNTLKKNPRDRMMLLKLEQEILDFINDNN--NQFKKFPQMTSYHRMLLHRVAAYFGM 215

Query: 66  AHVSVGEGVDRHLVLERCPESSIPSILVSDILWEYDEPQMSTIPHQLLKRKENS---PVS 125
            H     G  + +++ +   + IP    S+ +   DE         +LKR + S     +
Sbjct: 216 DHNVDQTG--KAVIINKTSSTRIPEQRFSEHI--KDEKNTEFQQRFILKRDDASMDRDDN 275

Query: 126 VTKAPCQ-----PSLEERQTAYLAVRKRIFMMHTGED 155
             + P Q      S+EER+  Y  VR+RIF   TG++
Sbjct: 276 QMRVPLQDGRRSKSIEEREEEYQRVRERIFARETGQN 306

BLAST of MS021996 vs. ExPASy Swiss-Prot
Match: Q8MSX1 (Protein encore OS=Drosophila melanogaster OX=7227 GN=enc PE=1 SV=2)

HSP 1 Score: 48.9 bits (115), Expect = 1.1e-04
Identity = 42/142 (29.58%), Postives = 68/142 (47.89%), Query Frame = 0

Query: 15  NLPSKHLILSMEETFVNFLQDETSLDGILELEPMDSYNRLLLHRLADIFGFAHVSVGEGV 74
           N   ++++L +E+  ++F+Q E S        P  SYNR+L+HR A  FG  H +V    
Sbjct: 440 NPKDRNILLKIEKDLIDFVQ-ENSRGCEYRFPPASSYNRMLIHRTAAFFGMEH-NVDTET 499

Query: 75  DRHLVLERCPESSIPSILVSDILWEYDEPQMSTIPHQLLKRKENSPVSVTKAP--CQPSL 134
            + +++     + IP I    ++   D+ + S     +LKR  +S   V ++P  C  SL
Sbjct: 500 QQCVIVAVAKNTRIPEIRFQSLV--RDDARKS-----ILKRDTHSFDEVRQSPYLCPLSL 559

Query: 135 -------EERQTAYLAVRKRIF 148
                  EER+  Y   R RIF
Sbjct: 560 DRKAKSFEEREEDYDRARSRIF 572

BLAST of MS021996 vs. ExPASy Swiss-Prot
Match: Q9DCB4 (cAMP-regulated phosphoprotein 21 OS=Mus musculus OX=10090 GN=Arpp21 PE=1 SV=2)

HSP 1 Score: 48.1 bits (113), Expect = 2.0e-04
Identity = 43/148 (29.05%), Postives = 71/148 (47.97%), Query Frame = 0

Query: 12  VKDNLPSKHLILSMEETFVNFLQDETSLDGILELEPMDSYNRLLLHRLADIFGFAHVSVG 71
           +K+N   + ++L ME+  ++F+ D  S +   +   M SY R+L+HR+A  FG  H    
Sbjct: 156 LKNNSRDRMILLKMEQEMIDFIAD--SNNHYKKFPQMSSYQRMLVHRVAAYFGLDHNVDQ 215

Query: 72  EGVDRHLVLERCPESSIPSILVSDILWEYDEPQMSTIPHQLLKRKENSPVSVTKAPCQ-- 131
            G  + +++ +   + IP     + L   DE    +    +LKR +NS  S+ K   Q  
Sbjct: 216 TG--KSVIINKTSSTRIPEQRFCEHL--KDEKSEESQKRFILKR-DNS--SIDKEDNQNR 275

Query: 132 ----------PSLEERQTAYLAVRKRIF 148
                      S+EER+  Y  VR+RIF
Sbjct: 276 MHPFRDDRRSKSIEEREEEYQRVRERIF 294

BLAST of MS021996 vs. ExPASy Swiss-Prot
Match: Q9UBL0 (cAMP-regulated phosphoprotein 21 OS=Homo sapiens OX=9606 GN=ARPP21 PE=1 SV=2)

HSP 1 Score: 47.0 bits (110), Expect = 4.3e-04
Identity = 44/155 (28.39%), Postives = 72/155 (46.45%), Query Frame = 0

Query: 6   EELAFLVKDNLPSKHLILSMEETFVNFLQDETSLDGILELEPMDSYNRLLLHRLADIFGF 65
           E L   +K+N   + ++L ME+  ++F+ D    +   +   M SY R+L+HR+A  FG 
Sbjct: 151 EFLINTLKNNSRDRMILLKMEQEIIDFIADNN--NHYKKFPQMSSYQRMLVHRVAAYFGL 210

Query: 66  AHVSVGEGVDRHLVLERCPESSIPSILVSDILWEYDEPQMSTIPHQLLKRKENSPVSVTK 125
            H     G  + +++ +   + IP     + L   DE    +    +LKR +NS  S+ K
Sbjct: 211 DHNVDQTG--KSVIINKTSSTRIPEQRFCEHL--KDEKGEESQKRFILKR-DNS--SIDK 270

Query: 126 APCQ-------------PSLEERQTAYLAVRKRIF 148
              Q              S+EER+  Y  VR+RIF
Sbjct: 271 EDNQQNRMHPFRDDRRSKSIEEREEEYQRVRERIF 296

BLAST of MS021996 vs. ExPASy TrEMBL
Match: A0A6J1D740 (uncharacterized protein LOC111018224 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111018224 PE=4 SV=1)

HSP 1 Score: 578.9 bits (1491), Expect = 1.2e-161
Identity = 290/292 (99.32%), Postives = 291/292 (99.66%), Query Frame = 0

Query: 5   VEELAFLVKDNLPSKHLILSMEETFVNFLQDETSLDGILELEPMDSYNRLLLHRLADIFG 64
           VEELAFLVKDNLPSKHLILSMEETFVNFLQDETSLDGILELEPMDSYNRLLLHRLADIFG
Sbjct: 7   VEELAFLVKDNLPSKHLILSMEETFVNFLQDETSLDGILELEPMDSYNRLLLHRLADIFG 66

Query: 65  FAHVSVGEGVDRHLVLERCPESSIPSILVSDILWEYDEPQMSTIPHQLLKRKENSPVSVT 124
           FAHVSVGEGVDRHLVLERCPESSIPSILVSDILWE+DEPQMSTIPHQLLKRKENSPVSVT
Sbjct: 67  FAHVSVGEGVDRHLVLERCPESSIPSILVSDILWEFDEPQMSTIPHQLLKRKENSPVSVT 126

Query: 125 KAPCQPSLEERQTAYLAVRKRIFMMHTGEDSEPVKPKPRCDPVVARRMIAHALGQRINSF 184
           KAPCQPSLEERQTAYLAVRKRIFMMHTGEDSEPVKPKPRCDPVVARRMIAHALGQRINSF
Sbjct: 127 KAPCQPSLEERQTAYLAVRKRIFMMHTGEDSEPVKPKPRCDPVVARRMIAHALGQRINSF 186

Query: 185 SEDTTYHCKEQGGAVDNNAHIQSNDSKEPESTVKAVKKTISRSDQRVNSKNRGDKNCNPI 244
           SEDTTYHCKEQGGAVDNNAHIQSNDSKEPESTVKAVKKTISRSDQRVN KNRGDKNCNPI
Sbjct: 187 SEDTTYHCKEQGGAVDNNAHIQSNDSKEPESTVKAVKKTISRSDQRVNLKNRGDKNCNPI 246

Query: 245 VSSARERNADKISPKASCIDNDYLKREHLGAAKRMFSQALGKHCRKNESFQT 297
           VSSARERNADKISPKASCIDNDYLKREHLGAAKRMFSQALGKHCRKNESFQT
Sbjct: 247 VSSARERNADKISPKASCIDNDYLKREHLGAAKRMFSQALGKHCRKNESFQT 298

BLAST of MS021996 vs. ExPASy TrEMBL
Match: A0A6J1D8H2 (uncharacterized protein LOC111018224 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111018224 PE=4 SV=1)

HSP 1 Score: 574.3 bits (1479), Expect = 2.9e-160
Identity = 290/293 (98.98%), Postives = 291/293 (99.32%), Query Frame = 0

Query: 5   VEELAFLVKDNLPSKHLILSMEETFVNFLQDET-SLDGILELEPMDSYNRLLLHRLADIF 64
           VEELAFLVKDNLPSKHLILSMEETFVNFLQDET SLDGILELEPMDSYNRLLLHRLADIF
Sbjct: 7   VEELAFLVKDNLPSKHLILSMEETFVNFLQDETSSLDGILELEPMDSYNRLLLHRLADIF 66

Query: 65  GFAHVSVGEGVDRHLVLERCPESSIPSILVSDILWEYDEPQMSTIPHQLLKRKENSPVSV 124
           GFAHVSVGEGVDRHLVLERCPESSIPSILVSDILWE+DEPQMSTIPHQLLKRKENSPVSV
Sbjct: 67  GFAHVSVGEGVDRHLVLERCPESSIPSILVSDILWEFDEPQMSTIPHQLLKRKENSPVSV 126

Query: 125 TKAPCQPSLEERQTAYLAVRKRIFMMHTGEDSEPVKPKPRCDPVVARRMIAHALGQRINS 184
           TKAPCQPSLEERQTAYLAVRKRIFMMHTGEDSEPVKPKPRCDPVVARRMIAHALGQRINS
Sbjct: 127 TKAPCQPSLEERQTAYLAVRKRIFMMHTGEDSEPVKPKPRCDPVVARRMIAHALGQRINS 186

Query: 185 FSEDTTYHCKEQGGAVDNNAHIQSNDSKEPESTVKAVKKTISRSDQRVNSKNRGDKNCNP 244
           FSEDTTYHCKEQGGAVDNNAHIQSNDSKEPESTVKAVKKTISRSDQRVN KNRGDKNCNP
Sbjct: 187 FSEDTTYHCKEQGGAVDNNAHIQSNDSKEPESTVKAVKKTISRSDQRVNLKNRGDKNCNP 246

Query: 245 IVSSARERNADKISPKASCIDNDYLKREHLGAAKRMFSQALGKHCRKNESFQT 297
           IVSSARERNADKISPKASCIDNDYLKREHLGAAKRMFSQALGKHCRKNESFQT
Sbjct: 247 IVSSARERNADKISPKASCIDNDYLKREHLGAAKRMFSQALGKHCRKNESFQT 299

BLAST of MS021996 vs. ExPASy TrEMBL
Match: A0A6J1HKF9 (uncharacterized protein LOC111465372 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465372 PE=4 SV=1)

HSP 1 Score: 449.1 bits (1154), Expect = 1.4e-122
Identity = 235/299 (78.60%), Postives = 256/299 (85.62%), Query Frame = 0

Query: 5   VEELAFLVKDNLPSKHLILSMEETFVNFLQDETSLDGILELEPMDSYNRLLLHRLADIFG 64
           VEELAFLVK+NLPSKHLILSME+ FV FLQDETS DGILELEPMDSYNRLLLHRLADIFG
Sbjct: 9   VEELAFLVKENLPSKHLILSMEDVFVKFLQDETSSDGILELEPMDSYNRLLLHRLADIFG 68

Query: 65  FAHVSVGEGVDRHLVLERCPESSIPSILVSDILWEYDEPQMSTIPHQLLKRKENSPVSVT 124
           FAHVSVGEG DRHLVLERCPESS+PSILVSDILWEYDEPQ+STIPHQLL+RKENS VS+ 
Sbjct: 69  FAHVSVGEGADRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRKENSSVSLE 128

Query: 125 KAPCQPSLEERQTAYLAVRKRIFMMHTGEDSEPVKPKPRCDPVVARRMIAHALGQRINSF 184
           K+P Q S EER+ AYLAVR+RIFMMH GEDSEP KPKPRCDPVVARRMIAHALG+RINS 
Sbjct: 129 KSPPQRSFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAHALGKRINSS 188

Query: 185 SEDTTYHCKEQGGAVDNNAHIQSNDSKEPESTVKAVKKTISRSDQRVNSKNRGDKNCNPI 244
            E TT HCKEQ G+V NNA++Q+N+ KEP+STV+ V KT  ++DQ VNSKN   KN NP 
Sbjct: 189 PEATTNHCKEQ-GSVANNAYVQANELKEPDSTVEVVNKTKLQTDQCVNSKNEVSKNRNPS 248

Query: 245 VSSARERN-------ADKISPKASCIDNDYLKREHLGAAKRMFSQALGKHCRKNESFQT 297
            SSAR  N       ADK SPKASC+DN+YLKREHLGAAKRMFSQALGK  RKNES QT
Sbjct: 249 RSSARGSNAAAAKMKADKSSPKASCVDNEYLKREHLGAAKRMFSQALGKQGRKNESLQT 306

BLAST of MS021996 vs. ExPASy TrEMBL
Match: A0A6J1FBT0 (uncharacterized protein LOC111443986 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443986 PE=4 SV=1)

HSP 1 Score: 448.0 bits (1151), Expect = 3.1e-122
Identity = 234/299 (78.26%), Postives = 254/299 (84.95%), Query Frame = 0

Query: 5   VEELAFLVKDNLPSKHLILSMEETFVNFLQDETSLDGILELEPMDSYNRLLLHRLADIFG 64
           VEELAFLVK+NLPSKHLILSME+ FV FLQDE S DGILELEPMDSYNRLLLHRLADIFG
Sbjct: 9   VEELAFLVKENLPSKHLILSMEDVFVKFLQDEISSDGILELEPMDSYNRLLLHRLADIFG 68

Query: 65  FAHVSVGEGVDRHLVLERCPESSIPSILVSDILWEYDEPQMSTIPHQLLKRKENSPVSVT 124
           FAHVSVGEGVDRHLVLERCPESS+PSILVSDILWEYDEPQ+STIPHQLL+RKENS VS+ 
Sbjct: 69  FAHVSVGEGVDRHLVLERCPESSMPSILVSDILWEYDEPQISTIPHQLLRRKENSSVSLK 128

Query: 125 KAPCQPSLEERQTAYLAVRKRIFMMHTGEDSEPVKPKPRCDPVVARRMIAHALGQRINSF 184
           K+P Q + EER+ AYLAVR+RIFMMH GEDSEP KPKPRCDPVVARRMIAHALG+RINS 
Sbjct: 129 KSPPQRTFEEREAAYLAVRERIFMMHIGEDSEPEKPKPRCDPVVARRMIAHALGKRINSS 188

Query: 185 SEDTTYHCKEQGGAVDNNAHIQSNDSKEPESTVKAVKKTISRSDQRVNSKNRGDKNCNPI 244
            E TT HCKEQ G+V NNAH+Q+N+ KEP+STV+ V KT  + DQ VNSKN   KN NPI
Sbjct: 189 PEATTNHCKEQ-GSVANNAHVQANELKEPDSTVEVVNKTKLQPDQCVNSKNEAGKNRNPI 248

Query: 245 VSSARERN-------ADKISPKASCIDNDYLKREHLGAAKRMFSQALGKHCRKNESFQT 297
            SSAR  N       ADK SPKASC+DN+YL REHLGAAKRMFSQALGK  RKNES  T
Sbjct: 249 RSSARGSNSAAAKMKADKSSPKASCVDNEYLTREHLGAAKRMFSQALGKQSRKNESLPT 306

BLAST of MS021996 vs. ExPASy TrEMBL
Match: A0A0A0LH15 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G074070 PE=4 SV=1)

HSP 1 Score: 447.2 bits (1149), Expect = 5.3e-122
Identity = 234/297 (78.79%), Postives = 254/297 (85.52%), Query Frame = 0

Query: 5   VEELAFLVKDNLPSKHLILSMEETFVNFLQDETSLDGILELEPMDSYNRLLLHRLADIFG 64
           VEELAFLVKDNLPSKHLILSMEETF+NFL +ETS DGILEL+PMDSYNRLLLHRLADIFG
Sbjct: 9   VEELAFLVKDNLPSKHLILSMEETFINFLHNETSSDGILELKPMDSYNRLLLHRLADIFG 68

Query: 65  FAHVSVGEGVDRHLVLERCPESSIPSILVSDILWEYDEPQMSTIPHQLLKRKENSPVSVT 124
             HVSVGEG +RHLVLER PESSIPSILVSDILWEYDEPQMSTIPHQLL+RKENS  S T
Sbjct: 69  LGHVSVGEGDNRHLVLERYPESSIPSILVSDILWEYDEPQMSTIPHQLLRRKENSSASST 128

Query: 125 KAPCQPSLEERQTAYLAVRKRIFMMHTGEDSEPVKPKPRCDPVVARRMIAHALGQRINSF 184
           K+  Q SLEER+ AYLAVR+RIFM H GED+EP+KPKPRCDP VARRMIAHALGQR+NS 
Sbjct: 129 KSSPQRSLEEREAAYLAVRERIFMTHVGEDNEPLKPKPRCDPAVARRMIAHALGQRVNSL 188

Query: 185 SEDTTYHCKEQGGAVDNNAHIQSNDSKEPESTVKAVKKTISRSDQRVNSKNRGDKNCNPI 244
           SEDT  H KEQGG V NNA+IQ+ DSK P+STV+A+ KTISRSDQ VN KN  DKNCNP 
Sbjct: 189 SEDTNCHQKEQGG-VTNNAYIQARDSKLPDSTVEAINKTISRSDQCVNLKNELDKNCNPD 248

Query: 245 VSSARERNADKIS-----PKASCIDNDYLKREHLGAAKRMFSQALGKHCRKNESFQT 297
           VS AR   A K+      PKAS +DN++LKREHLGAAKRMFSQALGKHCRKNES QT
Sbjct: 249 VSLARGSTAAKMKPAKSYPKASHVDNEHLKREHLGAAKRMFSQALGKHCRKNESLQT 304

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022149930.12.4e-16199.32uncharacterized protein LOC111018224 isoform X2 [Momordica charantia][more]
XP_022149929.16.0e-16098.98uncharacterized protein LOC111018224 isoform X1 [Momordica charantia][more]
KAG6586140.11.0e-12278.33TATA box-binding protein-associated factor RNA polymerase I subunit B, partial [... [more]
XP_022965481.12.9e-12278.60uncharacterized protein LOC111465372 isoform X1 [Cucurbita maxima] >XP_022965482... [more]
XP_022937642.16.5e-12278.26uncharacterized protein LOC111443986 isoform X1 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
A0JNC23.6e-0628.03R3H domain-containing protein 2 OS=Bos taurus OX=9913 GN=R3HDM2 PE=2 SV=1[more]
Q80TM63.6e-0628.03R3H domain-containing protein 2 OS=Mus musculus OX=10090 GN=R3hdm2 PE=1 SV=2[more]
Q8MSX11.1e-0429.58Protein encore OS=Drosophila melanogaster OX=7227 GN=enc PE=1 SV=2[more]
Q9DCB42.0e-0429.05cAMP-regulated phosphoprotein 21 OS=Mus musculus OX=10090 GN=Arpp21 PE=1 SV=2[more]
Q9UBL04.3e-0428.39cAMP-regulated phosphoprotein 21 OS=Homo sapiens OX=9606 GN=ARPP21 PE=1 SV=2[more]
Match NameE-valueIdentityDescription
A0A6J1D7401.2e-16199.32uncharacterized protein LOC111018224 isoform X2 OS=Momordica charantia OX=3673 G... [more]
A0A6J1D8H22.9e-16098.98uncharacterized protein LOC111018224 isoform X1 OS=Momordica charantia OX=3673 G... [more]
A0A6J1HKF91.4e-12278.60uncharacterized protein LOC111465372 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1FBT03.1e-12278.26uncharacterized protein LOC111443986 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A0A0LH155.3e-12278.79Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G074070 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001374R3H domainSMARTSM00393R3H_4coord: 6..83
e-value: 1.7E-4
score: 31.0
IPR001374R3H domainPFAMPF01424R3Hcoord: 22..81
e-value: 2.8E-15
score: 56.0
IPR001374R3H domainPROSITEPS51061R3Hcoord: 19..84
score: 15.771161
IPR036867R3H domain superfamilyGENE3D3.30.1370.50coord: 3..119
e-value: 2.6E-21
score: 77.5
IPR036867R3H domain superfamilySUPERFAMILY82708R3H domaincoord: 10..117
IPR024771SUZ domainPFAMPF12752SUZcoord: 114..149
e-value: 8.5E-6
score: 26.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 200..253
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 214..235
NoneNo IPR availablePANTHERPTHR15672:SF25RNA-BINDING SUPPRESSOR OF PAS KINASE PROTEIN 1coord: 5..290
NoneNo IPR availablePANTHERPTHR15672CAMP-REGULATED PHOSPHOPROTEIN 21 RELATED R3H DOMAIN CONTAINING PROTEINcoord: 5..290
NoneNo IPR availableCDDcd02642R3H_encore_likecoord: 18..83
e-value: 1.41433E-16
score: 70.7093

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS021996.1MS021996.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding