MS021956 (gene) Bitter gourd (TR) v1

Overview
NameMS021956
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold110: 556879 .. 557040 (+)
RNA-Seq ExpressionMS021956
SyntenyMS021956
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGGCTAATCTTGGAGGAAGTAGCGGCATCATGTTGTACATCACCTTTAAAGTGAAGCCGTCTGATACGCCTGTTGAATACCCAACCACTACATTTCAAGCTAAAGTACTAGATGGTCCGGATGGATATTGCATAGAACTTTGTAGGATTAAGCCTTCAAAT

mRNA sequence

AAGGCTAATCTTGGAGGAAGTAGCGGCATCATGTTGTACATCACCTTTAAAGTGAAGCCGTCTGATACGCCTGTTGAATACCCAACCACTACATTTCAAGCTAAAGTACTAGATGGTCCGGATGGATATTGCATAGAACTTTGTAGGATTAAGCCTTCAAAT

Coding sequence (CDS)

AAGGCTAATCTTGGAGGAAGTAGCGGCATCATGTTGTACATCACCTTTAAAGTGAAGCCGTCTGATACGCCTGTTGAATACCCAACCACTACATTTCAAGCTAAAGTACTAGATGGTCCGGATGGATATTGCATAGAACTTTGTAGGATTAAGCCTTCAAAT

Protein sequence

KANLGGSSGIMLYITFKVKPSDTPVEYPTTTFQAKVLDGPDGYCIELCRIKPSN
Homology
BLAST of MS021956 vs. NCBI nr
Match: XP_022149809.1 (uncharacterized protein LOC111018153 [Momordica charantia])

HSP 1 Score: 91.3 bits (225), Expect = 2.8e-15
Identity = 43/54 (79.63%), Postives = 46/54 (85.19%), Query Frame = 0

Query: 1   KANLGGSSGIMLYITFKVKPSDTPVEYPTTTFQAKVLDGPDGYCIELCRIKPSN 55
           KAN+GGS GI LYITFKVKPS TP EYPTTTFQA+VLD   GY IE+CRIKPSN
Sbjct: 59  KANVGGSCGIGLYITFKVKPSGTPAEYPTTTFQAQVLDCTAGYFIEVCRIKPSN 112

BLAST of MS021956 vs. NCBI nr
Match: XP_022942206.1 (uncharacterized protein LOC111447330 [Cucurbita moschata] >XP_022942207.1 uncharacterized protein LOC111447330 [Cucurbita moschata])

HSP 1 Score: 58.5 bits (140), Expect = 2.0e-05
Identity = 31/56 (55.36%), Postives = 36/56 (64.29%), Query Frame = 0

Query: 1   KANLGGSSGIMLYITFKVKPSDTPVEYPTTTFQAKV---LDGPDGYCIELCRIKPS 54
           KAN  G  G M YITF VKP  TP+E+P+ TFQAKV   +   D   +ELCR KPS
Sbjct: 102 KANHSGCCGSMYYITFNVKPIGTPLEFPSITFQAKVYYAIPIKDIIDVELCRPKPS 157

BLAST of MS021956 vs. NCBI nr
Match: XP_023548353.1 (UPF0725 protein At1g02770-like [Cucurbita pepo subsp. pepo] >XP_023548361.1 UPF0725 protein At1g02770-like [Cucurbita pepo subsp. pepo] >XP_023548367.1 UPF0725 protein At1g02770-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 58.5 bits (140), Expect = 2.0e-05
Identity = 32/57 (56.14%), Postives = 35/57 (61.40%), Query Frame = 0

Query: 1   KANLGGSSGIMLYITFKVKPSDTPVEYPTTTFQAKV---LDGPDGYCIELCRIKPSN 55
           KAN  G  G M YITF VKP  T VE+P  TFQAKV   +   D   +ELCR KPSN
Sbjct: 102 KANHSGCCGSMYYITFNVKPIGTSVEFPPITFQAKVYYAIPIKDIIDVELCRPKPSN 158

BLAST of MS021956 vs. NCBI nr
Match: XP_022975633.1 (uncharacterized protein LOC111475320 [Cucurbita maxima])

HSP 1 Score: 56.6 bits (135), Expect = 7.6e-05
Identity = 31/57 (54.39%), Postives = 35/57 (61.40%), Query Frame = 0

Query: 1   KANLGGSSGIMLYITFKVKPSDTPVEYPTTTFQAKV---LDGPDGYCIELCRIKPSN 55
           KAN  G  G M YITF VKP  T  E+P+ TFQAKV   +   D   +ELCR KPSN
Sbjct: 102 KANHEGCCGSMYYITFNVKPIGTSAEFPSITFQAKVYYAIPIKDIIEVELCRPKPSN 158

BLAST of MS021956 vs. NCBI nr
Match: XP_022137488.1 (uncharacterized protein LOC111008920 isoform X1 [Momordica charantia])

HSP 1 Score: 54.7 bits (130), Expect = 2.9e-04
Identity = 25/56 (44.64%), Postives = 38/56 (67.86%), Query Frame = 0

Query: 1   KANLGGSSGIMLYITFKVKPSDTPVEYPTTTFQAKVLDG--PDGYCIELCRIKPSN 55
           KAN   + G + ++TF+VK +  P + PTTT QA+VL G  PD + ++LCR +P+N
Sbjct: 127 KANSQAALGELFFLTFQVKQTGAPPDSPTTTLQARVLAGISPDDFDVQLCRPEPTN 182

BLAST of MS021956 vs. ExPASy TrEMBL
Match: A0A6J1D850 (uncharacterized protein LOC111018153 OS=Momordica charantia OX=3673 GN=LOC111018153 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.4e-15
Identity = 43/54 (79.63%), Postives = 46/54 (85.19%), Query Frame = 0

Query: 1   KANLGGSSGIMLYITFKVKPSDTPVEYPTTTFQAKVLDGPDGYCIELCRIKPSN 55
           KAN+GGS GI LYITFKVKPS TP EYPTTTFQA+VLD   GY IE+CRIKPSN
Sbjct: 59  KANVGGSCGIGLYITFKVKPSGTPAEYPTTTFQAQVLDCTAGYFIEVCRIKPSN 112

BLAST of MS021956 vs. ExPASy TrEMBL
Match: A0A6J1FN74 (uncharacterized protein LOC111447330 OS=Cucurbita moschata OX=3662 GN=LOC111447330 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 9.7e-06
Identity = 31/56 (55.36%), Postives = 36/56 (64.29%), Query Frame = 0

Query: 1   KANLGGSSGIMLYITFKVKPSDTPVEYPTTTFQAKV---LDGPDGYCIELCRIKPS 54
           KAN  G  G M YITF VKP  TP+E+P+ TFQAKV   +   D   +ELCR KPS
Sbjct: 102 KANHSGCCGSMYYITFNVKPIGTPLEFPSITFQAKVYYAIPIKDIIDVELCRPKPS 157

BLAST of MS021956 vs. ExPASy TrEMBL
Match: A0A6J1IJT3 (uncharacterized protein LOC111475320 OS=Cucurbita maxima OX=3661 GN=LOC111475320 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.7e-05
Identity = 31/57 (54.39%), Postives = 35/57 (61.40%), Query Frame = 0

Query: 1   KANLGGSSGIMLYITFKVKPSDTPVEYPTTTFQAKV---LDGPDGYCIELCRIKPSN 55
           KAN  G  G M YITF VKP  T  E+P+ TFQAKV   +   D   +ELCR KPSN
Sbjct: 102 KANHEGCCGSMYYITFNVKPIGTSAEFPSITFQAKVYYAIPIKDIIEVELCRPKPSN 158

BLAST of MS021956 vs. ExPASy TrEMBL
Match: A0A6J1CAH1 (uncharacterized protein LOC111008920 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111008920 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.4e-04
Identity = 25/56 (44.64%), Postives = 38/56 (67.86%), Query Frame = 0

Query: 1   KANLGGSSGIMLYITFKVKPSDTPVEYPTTTFQAKVLDG--PDGYCIELCRIKPSN 55
           KAN   + G + ++TF+VK +  P + PTTT QA+VL G  PD + ++LCR +P+N
Sbjct: 127 KANSQAALGELFFLTFQVKQTGAPPDSPTTTLQARVLAGISPDDFDVQLCRPEPTN 182

BLAST of MS021956 vs. ExPASy TrEMBL
Match: A0A6J1C7D4 (uncharacterized protein LOC111008920 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111008920 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.4e-04
Identity = 25/56 (44.64%), Postives = 38/56 (67.86%), Query Frame = 0

Query: 1   KANLGGSSGIMLYITFKVKPSDTPVEYPTTTFQAKVLDG--PDGYCIELCRIKPSN 55
           KAN   + G + ++TF+VK +  P + PTTT QA+VL G  PD + ++LCR +P+N
Sbjct: 111 KANSQAALGELFFLTFQVKQTGAPPDSPTTTLQARVLAGISPDDFDVQLCRPEPTN 166

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022149809.12.8e-1579.63uncharacterized protein LOC111018153 [Momordica charantia][more]
XP_022942206.12.0e-0555.36uncharacterized protein LOC111447330 [Cucurbita moschata] >XP_022942207.1 unchar... [more]
XP_023548353.12.0e-0556.14UPF0725 protein At1g02770-like [Cucurbita pepo subsp. pepo] >XP_023548361.1 UPF0... [more]
XP_022975633.17.6e-0554.39uncharacterized protein LOC111475320 [Cucurbita maxima][more]
XP_022137488.12.9e-0444.64uncharacterized protein LOC111008920 isoform X1 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1D8501.4e-1579.63uncharacterized protein LOC111018153 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
A0A6J1FN749.7e-0655.36uncharacterized protein LOC111447330 OS=Cucurbita moschata OX=3662 GN=LOC1114473... [more]
A0A6J1IJT33.7e-0554.39uncharacterized protein LOC111475320 OS=Cucurbita maxima OX=3661 GN=LOC111475320... [more]
A0A6J1CAH11.4e-0444.64uncharacterized protein LOC111008920 isoform X1 OS=Momordica charantia OX=3673 G... [more]
A0A6J1C7D41.4e-0444.64uncharacterized protein LOC111008920 isoform X2 OS=Momordica charantia OX=3673 G... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS021956.1MS021956.1mRNA