MS021866 (gene) Bitter gourd (TR) v1

Overview
NameMS021866
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionATP synthase subunit e, mitochondrial
Locationscaffold1: 877828 .. 878304 (-)
RNA-Seq ExpressionMS021866
SyntenyMS021866
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGCCCCCTCCTGGCCCTTACTCCGGCACCAGCACTCTTGCTCTGGTATTTGCCTTTTCTTTTACCCCTAATCATCTGCAGAACTATTATCTTCTATATTTTCGATTTTTGTTGACCTCGATCCCTGTCATGTCCCGTGTCCAACTCTTTTCTCAAAGGGTTCGGGGTGGTATTTAGATGCATCTAGATCTATCCCTTTTTTTCTCCCCGACCAACTGAATTCTCAACCGCATGGTAATTTGAGCGAATGGAACCTACGATAGGAAATTTTGGTTTTCGTTTTTGTACTAATTTGTCATATTATTTACAATTCTTTCTTGGGAATGAATTGGATCCATTCATTATAGATTCTGAGTTTTTTTCTCCCCTTTTATATCCCAATTTTTTTGGTATCGATTTCCTCAGGTAGCCCGAGCATCAGCATTCACCTTTGGTGTGGTTTACGGAAGCATTAAGCTCAAGGTTCTGAAGGTA

mRNA sequence

ATGGCGCCCCCTCCTGGCCCTTACTCCGGCACCAGCACTCTTGCTCTGGTAGCCCGAGCATCAGCATTCACCTTTGGTGTGGTTTACGGAAGCATTAAGCTCAAGGTTCTGAAGGTA

Coding sequence (CDS)

ATGGCGCCCCCTCCTGGCCCTTACTCCGGCACCAGCACTCTTGCTCTGGTAGCCCGAGCATCAGCATTCACCTTTGGTGTGGTTTACGGAAGCATTAAGCTCAAGGTTCTGAAGGTA

Protein sequence

MAPPPGPYSGTSTLALVARASAFTFGVVYGSIKLKVLKV
Homology
BLAST of MS021866 vs. NCBI nr
Match: XP_022132454.1 (uncharacterized protein LOC111005275 [Momordica charantia])

HSP 1 Score: 74.7 bits (182), Expect = 2.0e-10
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0

Query: 1  MAPPPGPYSGTSTLALVARASAFTFGVVYGSIKLKVLK 39
          MAPPPGPYSGTSTLALVARASAFTFGVVYGSIKLKVLK
Sbjct: 1  MAPPPGPYSGTSTLALVARASAFTFGVVYGSIKLKVLK 38

BLAST of MS021866 vs. NCBI nr
Match: XP_034674782.1 (uncharacterized protein LOC117905979 [Vitis riparia])

HSP 1 Score: 73.9 bits (180), Expect = 3.3e-10
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0

Query: 1  MAPPPGPYSGTSTLALVARASAFTFGVVYGSIKLKVLK 39
          MAPPPGPYSGTSTLALVARASAFTFGVVYGS+KLKVLK
Sbjct: 1  MAPPPGPYSGTSTLALVARASAFTFGVVYGSLKLKVLK 38

BLAST of MS021866 vs. NCBI nr
Match: KAG2689214.1 (hypothetical protein I3760_09G129700 [Carya illinoinensis] >KAG6642297.1 hypothetical protein CIPAW_09G132900 [Carya illinoinensis] >KAG6696106.1 hypothetical protein I3842_09G130800 [Carya illinoinensis] >KAG7963641.1 hypothetical protein I3843_09G128500 [Carya illinoinensis])

HSP 1 Score: 73.6 bits (179), Expect = 4.4e-10
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 0

Query: 1  MAPPPGPYSGTSTLALVARASAFTFGVVYGSIKLKVLK 39
          MAPPPGPYSGTSTLALVARASAFTFGVVYGS+KLK+LK
Sbjct: 1  MAPPPGPYSGTSTLALVARASAFTFGVVYGSLKLKILK 38

BLAST of MS021866 vs. NCBI nr
Match: KAA0063268.1 (ATP synthase E chain [Cucumis melo var. makuwa] >TYK31506.1 ATP synthase E chain [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 4.4e-10
Identity = 37/39 (94.87%), Postives = 39/39 (100.00%), Query Frame = 0

Query: 1   MAPPPGPYSGTSTLALVARASAFTFGVVYGSIKLKVLKV 40
           MAPPPGPYSGTSTLALVARASAFTFG+VYG+IKLKVLKV
Sbjct: 94  MAPPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLKV 132

BLAST of MS021866 vs. NCBI nr
Match: CBI19829.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 73.2 bits (178), Expect = 5.7e-10
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 0

Query: 1  MAPPPGPYSGTSTLALVARASAFTFGVVYGSIKLKVLKV 40
          MAPPPGPYSGTSTLALV RASAFTFGVVYGS+KLKVLK+
Sbjct: 1  MAPPPGPYSGTSTLALVVRASAFTFGVVYGSLKLKVLKI 39

BLAST of MS021866 vs. ExPASy TrEMBL
Match: A0A6J1BT37 (ATP synthase subunit e, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111005275 PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 9.5e-11
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0

Query: 1  MAPPPGPYSGTSTLALVARASAFTFGVVYGSIKLKVLK 39
          MAPPPGPYSGTSTLALVARASAFTFGVVYGSIKLKVLK
Sbjct: 1  MAPPPGPYSGTSTLALVARASAFTFGVVYGSIKLKVLK 38

BLAST of MS021866 vs. ExPASy TrEMBL
Match: A0A5A7V6P3 (ATP synthase E chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G008240 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.1e-10
Identity = 37/39 (94.87%), Postives = 39/39 (100.00%), Query Frame = 0

Query: 1   MAPPPGPYSGTSTLALVARASAFTFGVVYGSIKLKVLKV 40
           MAPPPGPYSGTSTLALVARASAFTFG+VYG+IKLKVLKV
Sbjct: 94  MAPPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLKV 132

BLAST of MS021866 vs. ExPASy TrEMBL
Match: E0CPL3 (ATP synthase subunit e, mitochondrial OS=Vitis vinifera OX=29760 GN=VIT_18s0001g13910 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.8e-10
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 0

Query: 1  MAPPPGPYSGTSTLALVARASAFTFGVVYGSIKLKVLKV 40
          MAPPPGPYSGTSTLALV RASAFTFGVVYGS+KLKVLK+
Sbjct: 1  MAPPPGPYSGTSTLALVVRASAFTFGVVYGSLKLKVLKI 39

BLAST of MS021866 vs. ExPASy TrEMBL
Match: A0A6A1UX75 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR8G025501 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.7e-10
Identity = 35/38 (92.11%), Postives = 38/38 (100.00%), Query Frame = 0

Query: 1  MAPPPGPYSGTSTLALVARASAFTFGVVYGSIKLKVLK 39
          MAPPPGPYSG+STLALVARASAFTFGVVYGS+KLK+LK
Sbjct: 1  MAPPPGPYSGSSTLALVARASAFTFGVVYGSVKLKILK 38

BLAST of MS021866 vs. ExPASy TrEMBL
Match: A0A438E4E8 (Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_106630 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.7e-10
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 0

Query: 1  MAPPPGPYSGTSTLALVARASAFTFGVVYGSIKLKVLK 39
          MAPPPGPYSGTSTLALV RASAFTFGVVYGS+KLKVLK
Sbjct: 1  MAPPPGPYSGTSTLALVVRASAFTFGVVYGSLKLKVLK 38

BLAST of MS021866 vs. TAIR 10
Match: AT3G01130.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G15320.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 62.4 bits (150), Expect = 9.4e-11
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 0

Query: 1  MAPPPGPYSGTSTLALVARASAFTFGVVYGSIKLKVLKV 40
          MAPPPG YSGTSTLALVARASAF  G++YG+IKLK LK+
Sbjct: 1  MAPPPGLYSGTSTLALVARASAFGLGLIYGNIKLKALKI 39

BLAST of MS021866 vs. TAIR 10
Match: AT3G01130.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G15320.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 61.6 bits (148), Expect = 1.6e-10
Identity = 31/38 (81.58%), Postives = 34/38 (89.47%), Query Frame = 0

Query: 1  MAPPPGPYSGTSTLALVARASAFTFGVVYGSIKLKVLK 39
          MAPPPG YSGTSTLALVARASAF  G++YG+IKLK LK
Sbjct: 1  MAPPPGLYSGTSTLALVARASAFGLGLIYGNIKLKALK 38

BLAST of MS021866 vs. TAIR 10
Match: AT5G15320.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01130.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 56.2 bits (134), Expect = 6.7e-09
Identity = 29/39 (74.36%), Postives = 34/39 (87.18%), Query Frame = 0

Query: 1  MAPPPGPYSGTSTLALVARASAFTFGVVYGSIKLKVLKV 40
          M  PPG YSGTS+LALVARASAF  G+VYG++KLKVLK+
Sbjct: 1  MTLPPGLYSGTSSLALVARASAFGLGLVYGNMKLKVLKI 39

BLAST of MS021866 vs. TAIR 10
Match: AT5G15320.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01130.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 51.6 bits (122), Expect = 1.7e-07
Identity = 26/36 (72.22%), Postives = 31/36 (86.11%), Query Frame = 0

Query: 1  MAPPPGPYSGTSTLALVARASAFTFGVVYGSIKLKV 37
          M  PPG YSGTS+LALVARASAF  G+VYG++KLK+
Sbjct: 1  MTLPPGLYSGTSSLALVARASAFGLGLVYGNMKLKI 36

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022132454.12.0e-10100.00uncharacterized protein LOC111005275 [Momordica charantia][more]
XP_034674782.13.3e-1097.37uncharacterized protein LOC117905979 [Vitis riparia][more]
KAG2689214.14.4e-1094.74hypothetical protein I3760_09G129700 [Carya illinoinensis] >KAG6642297.1 hypothe... [more]
KAA0063268.14.4e-1094.87ATP synthase E chain [Cucumis melo var. makuwa] >TYK31506.1 ATP synthase E chain... [more]
CBI19829.35.7e-1092.31unnamed protein product, partial [Vitis vinifera][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1BT379.5e-11100.00ATP synthase subunit e, mitochondrial OS=Momordica charantia OX=3673 GN=LOC11100... [more]
A0A5A7V6P32.1e-1094.87ATP synthase E chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455... [more]
E0CPL32.8e-1092.31ATP synthase subunit e, mitochondrial OS=Vitis vinifera OX=29760 GN=VIT_18s0001g... [more]
A0A6A1UX754.7e-1092.11Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR8G025501 PE=4 SV=1[more]
A0A438E4E84.7e-1094.74Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=CK... [more]
Match NameE-valueIdentityDescription
AT3G01130.19.4e-1179.49unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G01130.21.6e-1081.58unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G15320.16.7e-0974.36unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G15320.21.7e-0772.22unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36028OSJNBB0050O03.8 PROTEINcoord: 1..39
NoneNo IPR availablePANTHERPTHR36028:SF6ATP SYNTHASE E CHAINcoord: 1..39

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS021866.1MS021866.1mRNA