MS021845 (gene) Bitter gourd (TR) v1

Overview
NameMS021845
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTransmembrane protein
Locationscaffold1: 759348 .. 759722 (+)
RNA-Seq ExpressionMS021845
SyntenyMS021845
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTGGATGGTGGGGGAAAGAGGTCCAGAGTGGAAGTATGGATGGGCAGAGAGAACGATGACCTCCTTGTCTCTCCCGCCGATGCCGCTGCTCGCCTTTTTCGGTGTCGTCGTCCTTCTGCTGTCGTTGCAGACGAAAACCGTGTTCGACTTCAAGTTGTTCCTTTTTGCTGTGATATTATTGCTGATCTTTGTTGTAAATTCCATGGCCGTGTATGGTACGGTTGTTGGGCCTGCTTCAGTGAGAACTACGACCAGGTCGGTTCGGGAGGCCGAAAAGGCCTCGCCTTGGGGCGTGGCGGTGTTGCTGTTTCTGCTGCTGATATTGCTATGGAACCGCCCTTACTTCCGCTCCAAGTGGTCGCCTCCATCT

mRNA sequence

ATGAGTTGGATGGTGGGGGAAAGAGGTCCAGAGTGGAAGTATGGATGGGCAGAGAGAACGATGACCTCCTTGTCTCTCCCGCCGATGCCGCTGCTCGCCTTTTTCGGTGTCGTCGTCCTTCTGCTGTCGTTGCAGACGAAAACCGTGTTCGACTTCAAGTTGTTCCTTTTTGCTGTGATATTATTGCTGATCTTTGTTGTAAATTCCATGGCCGTGTATGGTACGGTTGTTGGGCCTGCTTCAGTGAGAACTACGACCAGGTCGGTTCGGGAGGCCGAAAAGGCCTCGCCTTGGGGCGTGGCGGTGTTGCTGTTTCTGCTGCTGATATTGCTATGGAACCGCCCTTACTTCCGCTCCAAGTGGTCGCCTCCATCT

Coding sequence (CDS)

ATGAGTTGGATGGTGGGGGAAAGAGGTCCAGAGTGGAAGTATGGATGGGCAGAGAGAACGATGACCTCCTTGTCTCTCCCGCCGATGCCGCTGCTCGCCTTTTTCGGTGTCGTCGTCCTTCTGCTGTCGTTGCAGACGAAAACCGTGTTCGACTTCAAGTTGTTCCTTTTTGCTGTGATATTATTGCTGATCTTTGTTGTAAATTCCATGGCCGTGTATGGTACGGTTGTTGGGCCTGCTTCAGTGAGAACTACGACCAGGTCGGTTCGGGAGGCCGAAAAGGCCTCGCCTTGGGGCGTGGCGGTGTTGCTGTTTCTGCTGCTGATATTGCTATGGAACCGCCCTTACTTCCGCTCCAAGTGGTCGCCTCCATCT

Protein sequence

MSWMVGERGPEWKYGWAERTMTSLSLPPMPLLAFFGVVVLLLSLQTKTVFDFKLFLFAVILLLIFVVNSMAVYGTVVGPASVRTTTRSVREAEKASPWGVAVLLFLLLILLWNRPYFRSKWSPPS
Homology
BLAST of MS021845 vs. NCBI nr
Match: KGN60038.1 (hypothetical protein Csa_001668 [Cucumis sativus])

HSP 1 Score: 182.2 bits (461), Expect = 2.8e-42
Identity = 95/126 (75.40%), Postives = 107/126 (84.92%), Query Frame = 0

Query: 1   MSWMVGERGPEWKYGWAERTMTSLSLPPMPLLAFFGVVVLLLSLQT-KTVFDFKLFLFAV 60
           MSW+V ERGPEWKYGW ER M+S+SLPPMPLLAF GVVVLLLSLQ+ + V DFKL L A+
Sbjct: 1   MSWVVEERGPEWKYGWTERKMSSMSLPPMPLLAFLGVVVLLLSLQSQQMVLDFKLLLLAL 60

Query: 61  ILLLIFVVNSMAVYGTVVGPASVRTTTRSVREAEKASPWGVAVLLFLLLILLWNRPYFRS 120
             L+IFV NS+AV GT VG AS+RT +RS +EAE+ SPWG AVLLFLLLILLWNRPYFRS
Sbjct: 61  PFLMIFVANSVAVSGT-VGSASMRTKSRSAQEAERTSPWGAAVLLFLLLILLWNRPYFRS 120

Query: 121 KWSPPS 126
           KWSPPS
Sbjct: 121 KWSPPS 125

BLAST of MS021845 vs. NCBI nr
Match: KAA0063287.1 (hypothetical protein E6C27_scaffold205G001100 [Cucumis melo var. makuwa])

HSP 1 Score: 178.7 bits (452), Expect = 3.1e-41
Identity = 93/126 (73.81%), Postives = 105/126 (83.33%), Query Frame = 0

Query: 1   MSWMVGERGPEWKYGWAERTMTSLSLPPMPLLAFFGVVVLLLSLQT-KTVFDFKLFLFAV 60
           MSW+V ERGPEWKYGW ER M S+SLPPMPLLAF GVVVLLLSLQ+ + V DFKL L A+
Sbjct: 1   MSWVVEERGPEWKYGWTERKMASMSLPPMPLLAFLGVVVLLLSLQSQQMVLDFKLLLLAL 60

Query: 61  ILLLIFVVNSMAVYGTVVGPASVRTTTRSVREAEKASPWGVAVLLFLLLILLWNRPYFRS 120
             L+IF  NS+AV GT VG A++RT +RS +EAE+ SPWG AVLLFLLLILLWNRPYFRS
Sbjct: 61  PFLIIFFANSVAVSGT-VGSAAMRTKSRSAQEAERTSPWGAAVLLFLLLILLWNRPYFRS 120

Query: 121 KWSPPS 126
           KWSPPS
Sbjct: 121 KWSPPS 125

BLAST of MS021845 vs. NCBI nr
Match: TYK31488.1 (hypothetical protein E5676_scaffold455G008040 [Cucumis melo var. makuwa])

HSP 1 Score: 177.2 bits (448), Expect = 9.0e-41
Identity = 92/126 (73.02%), Postives = 104/126 (82.54%), Query Frame = 0

Query: 1   MSWMVGERGPEWKYGWAERTMTSLSLPPMPLLAFFGVVVLLLSLQT-KTVFDFKLFLFAV 60
           MSW+V ERGPEWKYGW ER M S+SLPPMPLLAF GVVVLLLSLQ+ + V DFKL L A+
Sbjct: 1   MSWVVEERGPEWKYGWTERKMASMSLPPMPLLAFLGVVVLLLSLQSQQMVLDFKLLLLAL 60

Query: 61  ILLLIFVVNSMAVYGTVVGPASVRTTTRSVREAEKASPWGVAVLLFLLLILLWNRPYFRS 120
              +IF  NS+AV GT VG A++RT +RS +EAE+ SPWG AVLLFLLLILLWNRPYFRS
Sbjct: 61  PFFIIFFANSVAVSGT-VGSAAMRTKSRSAQEAERTSPWGAAVLLFLLLILLWNRPYFRS 120

Query: 121 KWSPPS 126
           KWSPPS
Sbjct: 121 KWSPPS 125

BLAST of MS021845 vs. NCBI nr
Match: KAG6608597.1 (hypothetical protein SDJN03_01939, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 144.8 bits (364), Expect = 4.9e-31
Identity = 80/115 (69.57%), Postives = 91/115 (79.13%), Query Frame = 0

Query: 1   MSWMVGERGPEWKYGWAERTMTSLSLPPMPLLAFFGVVVLLLSLQTKTV-FDFKLFLFAV 60
           MSW   ER  EWKYGWAERTM S+SLPPMPLLAF GVV+LLLSLQ++ + FDFKLFL A+
Sbjct: 1   MSWAEEERVQEWKYGWAERTMASMSLPPMPLLAFLGVVLLLLSLQSQDMAFDFKLFLLAL 60

Query: 61  ILLLIFVVNSMAVYGTVVGPASVRTTTRSVREAEKASPWGVAVLLFLLLILLWNR 115
             LLIF+ NS+ V G+V   A +RT  RS +EAEK SPWG AVLLFLLLILLWNR
Sbjct: 61  PFLLIFIANSLLVAGSVASTA-MRTKNRSAQEAEKTSPWGAAVLLFLLLILLWNR 114

BLAST of MS021845 vs. NCBI nr
Match: KAG7037914.1 (hypothetical protein SDJN02_01545, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 143.7 bits (361), Expect = 1.1e-30
Identity = 79/115 (68.70%), Postives = 91/115 (79.13%), Query Frame = 0

Query: 1   MSWMVGERGPEWKYGWAERTMTSLSLPPMPLLAFFGVVVLLLSLQTKTV-FDFKLFLFAV 60
           MSW   ER PEWKYGWAERT+ S+S PPMPLLAF GVV+LLLSLQ++ + FDFKLFL A+
Sbjct: 1   MSWAEEERVPEWKYGWAERTIASMSPPPMPLLAFLGVVLLLLSLQSQEMAFDFKLFLLAL 60

Query: 61  ILLLIFVVNSMAVYGTVVGPASVRTTTRSVREAEKASPWGVAVLLFLLLILLWNR 115
             LLIF+ NS+ V G+V   A +RT  RS +EAEK SPWG AVLLFLLLILLWNR
Sbjct: 61  PFLLIFIANSLLVSGSVASTA-MRTKNRSAQEAEKTSPWGAAVLLFLLLILLWNR 114

BLAST of MS021845 vs. ExPASy TrEMBL
Match: A0A0A0LE80 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G872200 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.3e-42
Identity = 95/126 (75.40%), Postives = 107/126 (84.92%), Query Frame = 0

Query: 1   MSWMVGERGPEWKYGWAERTMTSLSLPPMPLLAFFGVVVLLLSLQT-KTVFDFKLFLFAV 60
           MSW+V ERGPEWKYGW ER M+S+SLPPMPLLAF GVVVLLLSLQ+ + V DFKL L A+
Sbjct: 1   MSWVVEERGPEWKYGWTERKMSSMSLPPMPLLAFLGVVVLLLSLQSQQMVLDFKLLLLAL 60

Query: 61  ILLLIFVVNSMAVYGTVVGPASVRTTTRSVREAEKASPWGVAVLLFLLLILLWNRPYFRS 120
             L+IFV NS+AV GT VG AS+RT +RS +EAE+ SPWG AVLLFLLLILLWNRPYFRS
Sbjct: 61  PFLMIFVANSVAVSGT-VGSASMRTKSRSAQEAERTSPWGAAVLLFLLLILLWNRPYFRS 120

Query: 121 KWSPPS 126
           KWSPPS
Sbjct: 121 KWSPPS 125

BLAST of MS021845 vs. ExPASy TrEMBL
Match: A0A5A7V8G0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold205G001100 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.5e-41
Identity = 93/126 (73.81%), Postives = 105/126 (83.33%), Query Frame = 0

Query: 1   MSWMVGERGPEWKYGWAERTMTSLSLPPMPLLAFFGVVVLLLSLQT-KTVFDFKLFLFAV 60
           MSW+V ERGPEWKYGW ER M S+SLPPMPLLAF GVVVLLLSLQ+ + V DFKL L A+
Sbjct: 1   MSWVVEERGPEWKYGWTERKMASMSLPPMPLLAFLGVVVLLLSLQSQQMVLDFKLLLLAL 60

Query: 61  ILLLIFVVNSMAVYGTVVGPASVRTTTRSVREAEKASPWGVAVLLFLLLILLWNRPYFRS 120
             L+IF  NS+AV GT VG A++RT +RS +EAE+ SPWG AVLLFLLLILLWNRPYFRS
Sbjct: 61  PFLIIFFANSVAVSGT-VGSAAMRTKSRSAQEAERTSPWGAAVLLFLLLILLWNRPYFRS 120

Query: 121 KWSPPS 126
           KWSPPS
Sbjct: 121 KWSPPS 125

BLAST of MS021845 vs. ExPASy TrEMBL
Match: A0A5D3E6P1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G008040 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 4.3e-41
Identity = 92/126 (73.02%), Postives = 104/126 (82.54%), Query Frame = 0

Query: 1   MSWMVGERGPEWKYGWAERTMTSLSLPPMPLLAFFGVVVLLLSLQT-KTVFDFKLFLFAV 60
           MSW+V ERGPEWKYGW ER M S+SLPPMPLLAF GVVVLLLSLQ+ + V DFKL L A+
Sbjct: 1   MSWVVEERGPEWKYGWTERKMASMSLPPMPLLAFLGVVVLLLSLQSQQMVLDFKLLLLAL 60

Query: 61  ILLLIFVVNSMAVYGTVVGPASVRTTTRSVREAEKASPWGVAVLLFLLLILLWNRPYFRS 120
              +IF  NS+AV GT VG A++RT +RS +EAE+ SPWG AVLLFLLLILLWNRPYFRS
Sbjct: 61  PFFIIFFANSVAVSGT-VGSAAMRTKSRSAQEAERTSPWGAAVLLFLLLILLWNRPYFRS 120

Query: 121 KWSPPS 126
           KWSPPS
Sbjct: 121 KWSPPS 125

BLAST of MS021845 vs. ExPASy TrEMBL
Match: A0A6J1FL09 (uncharacterized protein LOC111446211 OS=Cucurbita moschata OX=3662 GN=LOC111446211 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 2.6e-30
Identity = 78/115 (67.83%), Postives = 90/115 (78.26%), Query Frame = 0

Query: 1   MSWMVGERGPEWKYGWAERTMTSLSLPPMPLLAFFGVVVLLLSLQTKTV-FDFKLFLFAV 60
           MSW   ER PEWKYGWAERT+ S+S PPMPLLAF GVV+LLLSLQ++ +  DFKLFL A+
Sbjct: 1   MSWAEEERVPEWKYGWAERTIASMSPPPMPLLAFLGVVLLLLSLQSQEMALDFKLFLLAL 60

Query: 61  ILLLIFVVNSMAVYGTVVGPASVRTTTRSVREAEKASPWGVAVLLFLLLILLWNR 115
             LLIF+ NS+ V G+V   A +RT  RS +EAEK SPWG AVLLFLLLILLWNR
Sbjct: 61  PFLLIFIANSLLVSGSVASTA-MRTKNRSAQEAEKTSPWGAAVLLFLLLILLWNR 114

BLAST of MS021845 vs. ExPASy TrEMBL
Match: A0A5A7VAG3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G004990 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 4.7e-19
Identity = 59/135 (43.70%), Postives = 82/135 (60.74%), Query Frame = 0

Query: 1   MSWMVGE-RGPEWKYGWAERTMTSLSLPPMPLLAFFGVVVLLLSLQT---------KTVF 60
           M W++ E RGP WK GWAE+ ++S++ PP PLLA  G++V+LLS+ +         KT  
Sbjct: 1   MGWLIRERRGPAWKQGWAEQALSSITPPPRPLLAILGILVILLSVSSYSSYRSQVKKTRI 60

Query: 61  DFKLFLFAVILLLIFVVNSMAVYG--TVVGPASVRTTTRSVREAEKASPWGVAVLLFLLL 120
           +FKLF   + L+ +FV NS+  YG   ++ P +          A  ASPWG AVLL +LL
Sbjct: 61  NFKLFFLLLPLVFVFVGNSIVRYGRLVIITPRTKLEPVYVTEGAASASPWGAAVLLVVLL 120

Query: 121 ILLWNRPYFRSKWSP 124
           +LL  +PYF SKW P
Sbjct: 121 VLLSYQPYFHSKWFP 135

BLAST of MS021845 vs. TAIR 10
Match: AT5G42146.1 (unknown protein; Has 98 Blast hits to 98 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 73.2 bits (178), Expect = 1.7e-13
Identity = 48/135 (35.56%), Postives = 70/135 (51.85%), Query Frame = 0

Query: 1   MSWMVGE-RGPEWKYGWAERTMTSLSLPPMPLLAFFGVVVLLLSLQT---------KTVF 60
           M W + E RG  WK GW E T+ + S PP+ LLA   ++ LLL L +         KT  
Sbjct: 1   MGWFIKERRGGSWKRGWLEETLLTSSAPPLTLLALLAIISLLLFLSSYPRYKYEVEKTAA 60

Query: 61  DFKLFLFAVILLLIFVVNSMAVYGTVV--GPASVRTTTRSVREAEKASPWGVAVLLFLLL 120
           + KLF+  + +L +FV+ S++    ++     SVR         E   PWGV ++L LLL
Sbjct: 61  NLKLFMLFLPILFVFVLVSLSFVHRLLFKSSYSVRANQAKSLFGEGNFPWGVLLMLILLL 120

Query: 121 ILLWNRPYFRSKWSP 124
           +L+  + YF S W P
Sbjct: 121 LLVSKQSYFHSLWYP 135

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN60038.12.8e-4275.40hypothetical protein Csa_001668 [Cucumis sativus][more]
KAA0063287.13.1e-4173.81hypothetical protein E6C27_scaffold205G001100 [Cucumis melo var. makuwa][more]
TYK31488.19.0e-4173.02hypothetical protein E5676_scaffold455G008040 [Cucumis melo var. makuwa][more]
KAG6608597.14.9e-3169.57hypothetical protein SDJN03_01939, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7037914.11.1e-3068.70hypothetical protein SDJN02_01545, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LE801.3e-4275.40Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G872200 PE=4 SV=1[more]
A0A5A7V8G01.5e-4173.81Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3E6P14.3e-4173.02Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1FL092.6e-3067.83uncharacterized protein LOC111446211 OS=Cucurbita moschata OX=3662 GN=LOC1114462... [more]
A0A5A7VAG34.7e-1943.70Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
AT5G42146.11.7e-1335.56unknown protein; Has 98 Blast hits to 98 proteins in 12 species: Archae - 0; Bac... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33306:SF26PROTEIN, PUTATIVE-RELATEDcoord: 1..124
NoneNo IPR availablePANTHERPTHR33306EXPRESSED PROTEIN-RELATED-RELATEDcoord: 1..124

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS021845.1MS021845.1mRNA