MS021828 (gene) Bitter gourd (TR) v1

Overview


Name	MS021828
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic
Location	scaffold1: 626661 .. 626810 (-)
RNA-Seq Expression	MS021828
Synteny	MS021828

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGAGTCTCAAACAAGGAAAAGGATCCGTATTAACTACTACTCTAGGAAGAATGTTTTTATGCGATGCTAGGGATTTAATAACTATATTTGTAGCTCTAGAATGTTTCAGTTTATGCTCCTACCTATTATCTGGATATACCAAGAAAAAT

mRNA sequence

GAGAGTCTCAAACAAGGAAAAGGATCCGTATTAACTACTACTCTAGGAAGAATGTTTTTATGCGATGCTAGGGATTTAATAACTATATTTGTAGCTCTAGAATGTTTCAGTTTATGCTCCTACCTATTATCTGGATATACCAAGAAAAAT

Coding sequence (CDS)

GAGAGTCTCAAACAAGGAAAAGGATCCGTATTAACTACTACTCTAGGAAGAATGTTTTTATGCGATGCTAGGGATTTAATAACTATATTTGTAGCTCTAGAATGTTTCAGTTTATGCTCCTACCTATTATCTGGATATACCAAGAAAAAT

Protein sequence

ESLKQGKGSVLTTTLGRMFLCDARDLITIFVALECFSLCSYLLSGYTKKN

Homology

[Close]

BLAST of MS021828 vs. NCBI nr
Match: YP_003434384.1 (NADH-plastoquinone oxidoreductase subunit 2 [Vigna radiata] >YP_003434399.1 NADH-plastoquinone oxidoreductase subunit 2 [Vigna radiata] >YP_006460382.1 NADH-plastoquinone oxidoreductase subunit 2 [Vigna unguiculata] >YP_006460400.1 NADH-plastoquinone oxidoreductase subunit 2 [Vigna unguiculata] >YP_007889764.1 NADH-plastoquinone oxidoreductase subunit 2 [Vigna angularis] >YP_007889778.1 NADH-plastoquinone oxidoreductase subunit 2 [Vigna angularis] >QRI59802.1 NADH-plastoquinone oxidoreductase subunit 2 [Decorsea schlechteri] >BAR79337.1 NADH-plastoquinone oxidoreductase subunit 2 [Vigna radiata var. radiata] >BAR79416.1 NADH-plastoquinone oxidoreductase subunit 2 [Vigna radiata var. sublobata] >ACV90251.1 NADH-plastoquinone oxidoreductase subunit 2 [Vigna radiata] >ACV90267.1 NADH-plastoquinone oxidoreductase subunit 2 [Vigna radiata])

HSP 1 Score: 75.9 bits (185), Expect = 1.1e-10
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 10  VLTTTLGRMFLCDARDLITIFVALECFSLCSYLLSGYTKKN 51
           +LTTTLG MFLC A DLITIFVALECFSLCSYLLSGYTKK+
Sbjct: 115 ILTTTLGGMFLCGANDLITIFVALECFSLCSYLLSGYTKKD 155

[Close]

BLAST of MS021828 vs. NCBI nr
Match: YP_010046506.1 (NADH-plastoquinone oxidoreductase subunit 2 [Lablab purpureus] >YP_010046523.1 NADH-plastoquinone oxidoreductase subunit 2 [Lablab purpureus] >QPJ78240.1 NADH-plastoquinone oxidoreductase subunit 2 [Lablab purpureus] >QPJ78241.1 NADH-plastoquinone oxidoreductase subunit 2 [Lablab purpureus] >QRI60714.1 NADH-plastoquinone oxidoreductase subunit 2 [Lablab purpureus] >QRI60729.1 NADH-plastoquinone oxidoreductase subunit 2 [Lablab purpureus])

HSP 1 Score: 75.9 bits (185), Expect = 1.1e-10
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 10  VLTTTLGRMFLCDARDLITIFVALECFSLCSYLLSGYTKKN 51
           +LTTTLG MFLC A DLITIFVALECFSLCSYLLSGYTKK+
Sbjct: 115 ILTTTLGGMFLCGANDLITIFVALECFSLCSYLLSGYTKKD 155

[Close]

BLAST of MS021828 vs. NCBI nr
Match: AJE71881.1 (NADH dehydrogenase subunit 2 [Strophostyles leiosperma])

HSP 1 Score: 75.9 bits (185), Expect = 1.1e-10
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 10  VLTTTLGRMFLCDARDLITIFVALECFSLCSYLLSGYTKKN 51
           +LTTTLG MFLC A DLITIFVALECFSLCSYLLSGYTKK+
Sbjct: 115 ILTTTLGGMFLCGANDLITIFVALECFSLCSYLLSGYTKKD 155

[Close]

BLAST of MS021828 vs. NCBI nr
Match: QRZ59571.1 (NADH-plastoquinone oxidoreductase subunit 2 [Vigna subterranea] >QRZ59586.1 NADH-plastoquinone oxidoreductase subunit 2 [Vigna subterranea])

HSP 1 Score: 75.9 bits (185), Expect = 1.1e-10
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 10  VLTTTLGRMFLCDARDLITIFVALECFSLCSYLLSGYTKKN 51
           +LTTTLG MFLC A DLITIFVALECFSLCSYLLSGYTKK+
Sbjct: 115 ILTTTLGGMFLCGANDLITIFVALECFSLCSYLLSGYTKKD 155

[Close]

BLAST of MS021828 vs. NCBI nr
Match: YP_001122857.1 (NADH-plastoquinone oxidoreductase subunit 2 [Phaseolus vulgaris] >YP_001165477.1 NADH-plastoquinone oxidoreductase subunit 2 [Phaseolus vulgaris] >P0CD28.1 RecName: Full=NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, subunit 2 A; AltName: Full=NADH-plastoquinone oxidoreductase subunit 2 A [Phaseolus vulgaris] >P0CD29.1 RecName: Full=NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic; AltName: Full=NAD(P)H dehydrogenase, subunit 2 B; AltName: Full=NADH-plastoquinone oxidoreductase subunit 2 B [Phaseolus vulgaris] >ABH88139.1 NADH-plastoquinone oxidoreductase subunit 2 [Phaseolus vulgaris] >ABP35957.1 NADH-plastoquinone oxidoreductase subunit 2 [Phaseolus vulgaris] >ABW22808.1 NADH-plastoquinone oxidoreductase subunit 2 [Phaseolus vulgaris] >ABW22823.1 NADH-plastoquinone oxidoreductase subunit 2 [Phaseolus vulgaris])

HSP 1 Score: 75.9 bits (185), Expect = 1.1e-10
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 10  VLTTTLGRMFLCDARDLITIFVALECFSLCSYLLSGYTKKN 51
           +LTTTLG MFLC A DLITIFVALECFSLCSYLLSGYTKK+
Sbjct: 115 ILTTTLGGMFLCGANDLITIFVALECFSLCSYLLSGYTKKD 155

[Close]

BLAST of MS021828 vs. ExPASy Swiss-Prot
Match: P0CD28 (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Phaseolus vulgaris OX=3885 GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.5e-13
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 10  VLTTTLGRMFLCDARDLITIFVALECFSLCSYLLSGYTKKN 51
           +LTTTLG MFLC A DLITIFVALECFSLCSYLLSGYTKK+
Sbjct: 115 ILTTTLGGMFLCGANDLITIFVALECFSLCSYLLSGYTKKD 155

[Close]

BLAST of MS021828 vs. ExPASy Swiss-Prot
Match: P0CD29 (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Phaseolus vulgaris OX=3885 GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.5e-13
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 10  VLTTTLGRMFLCDARDLITIFVALECFSLCSYLLSGYTKKN 51
           +LTTTLG MFLC A DLITIFVALECFSLCSYLLSGYTKK+
Sbjct: 115 ILTTTLGGMFLCGANDLITIFVALECFSLCSYLLSGYTKKD 155

[Close]

BLAST of MS021828 vs. ExPASy Swiss-Prot
Match: P0CC98 (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Nicotiana tabacum OX=4097 GN=ndhB1 PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 4.3e-13
Identity = 36/41 (87.80%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 10  VLTTTLGRMFLCDARDLITIFVALECFSLCSYLLSGYTKKN 51
           VLT TLG MFLC A DLITIFVALECFSLCSYLLSGYTKK+
Sbjct: 133 VLTATLGGMFLCGANDLITIFVALECFSLCSYLLSGYTKKD 173

[Close]

BLAST of MS021828 vs. ExPASy Swiss-Prot
Match: P0CC99 (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Nicotiana tabacum OX=4097 GN=ndhB2 PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 4.3e-13
Identity = 36/41 (87.80%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 10  VLTTTLGRMFLCDARDLITIFVALECFSLCSYLLSGYTKKN 51
           VLT TLG MFLC A DLITIFVALECFSLCSYLLSGYTKK+
Sbjct: 133 VLTATLGGMFLCGANDLITIFVALECFSLCSYLLSGYTKKD 173

[Close]

BLAST of MS021828 vs. ExPASy Swiss-Prot
Match: P0CC32 (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ndhB1 PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 5.6e-13
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 10  VLTTTLGRMFLCDARDLITIFVALECFSLCSYLLSGYTKKN 51
           +LT TLG MFLC A DLITIFVALECFSLCSYLLSGYTKK+
Sbjct: 133 ILTATLGGMFLCGANDLITIFVALECFSLCSYLLSGYTKKD 173

[Close]

BLAST of MS021828 vs. ExPASy TrEMBL
Match: A0A0F7RPH5 (NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Vigna radiata var. radiata OX=3916 GN=ndhB PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.5e-11
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 10  VLTTTLGRMFLCDARDLITIFVALECFSLCSYLLSGYTKKN 51
           +LTTTLG MFLC A DLITIFVALECFSLCSYLLSGYTKK+
Sbjct: 115 ILTTTLGGMFLCGANDLITIFVALECFSLCSYLLSGYTKKD 155

[Close]

BLAST of MS021828 vs. ExPASy TrEMBL
Match: A0A7T0GE43 (NADH-plastoquinone oxidoreductase subunit 2 OS=Lablab purpureus OX=35936 GN=ndhB PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.5e-11
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 10  VLTTTLGRMFLCDARDLITIFVALECFSLCSYLLSGYTKKN 51
           +LTTTLG MFLC A DLITIFVALECFSLCSYLLSGYTKK+
Sbjct: 115 ILTTTLGGMFLCGANDLITIFVALECFSLCSYLLSGYTKKD 155

[Close]

BLAST of MS021828 vs. ExPASy TrEMBL
Match: A0A0F7RJU6 (NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Vigna radiata var. sublobata OX=87084 GN=ndhB PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.5e-11
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 10  VLTTTLGRMFLCDARDLITIFVALECFSLCSYLLSGYTKKN 51
           +LTTTLG MFLC A DLITIFVALECFSLCSYLLSGYTKK+
Sbjct: 115 ILTTTLGGMFLCGANDLITIFVALECFSLCSYLLSGYTKKD 155

[Close]

BLAST of MS021828 vs. ExPASy TrEMBL
Match: N0DL12 (NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Phaseolus angularis OX=3914 GN=ndhB PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.5e-11
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 10  VLTTTLGRMFLCDARDLITIFVALECFSLCSYLLSGYTKKN 51
           +LTTTLG MFLC A DLITIFVALECFSLCSYLLSGYTKK+
Sbjct: 115 ILTTTLGGMFLCGANDLITIFVALECFSLCSYLLSGYTKKD 155

[Close]

BLAST of MS021828 vs. ExPASy TrEMBL
Match: I2E2T0 (NADH-quinone oxidoreductase subunit N OS=Vigna unguiculata OX=3917 GN=ndhB PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.5e-11
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 10  VLTTTLGRMFLCDARDLITIFVALECFSLCSYLLSGYTKKN 51
           +LTTTLG MFLC A DLITIFVALECFSLCSYLLSGYTKK+
Sbjct: 115 ILTTTLGGMFLCGANDLITIFVALECFSLCSYLLSGYTKKD 155

[Close]

BLAST of MS021828 vs. TAIR 10
Match: ATCG00890.1 (NADH-Ubiquinone/plastoquinone (complex I) protein )

HSP 1 Score: 71.2 bits (173), Expect = 2.6e-13
Identity = 34/41 (82.93%), Postives = 36/41 (87.80%), Query Frame = 0


Query: 10 VLTTTLGRMFLCDARDLITIFVALECFSLCSYLLSGYTKKN 51
          +LT TLG MFLC A DLITIFVA ECFSLCSYLLSGYTKK+
Sbjct: 10 ILTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKKD 50

[Close]

BLAST of MS021828 vs. TAIR 10
Match: ATCG01250.1 (NADH-Ubiquinone/plastoquinone (complex I) protein )

HSP 1 Score: 71.2 bits (173), Expect = 2.6e-13
Identity = 34/41 (82.93%), Postives = 36/41 (87.80%), Query Frame = 0


Query: 10 VLTTTLGRMFLCDARDLITIFVALECFSLCSYLLSGYTKKN 51
          +LT TLG MFLC A DLITIFVA ECFSLCSYLLSGYTKK+
Sbjct: 10 ILTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKKD 50

The following BLAST results are available for this feature:

BLAST of MS021828 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_003434384.1	1.1e-10	87.80	NADH-plastoquinone oxidoreductase subunit 2 [Vigna radiata] >YP_003434399.1 NADH...	[more]
YP_010046506.1	1.1e-10	87.80	NADH-plastoquinone oxidoreductase subunit 2 [Lablab purpureus] >YP_010046523.1 N...	[more]
AJE71881.1	1.1e-10	87.80	NADH dehydrogenase subunit 2 [Strophostyles leiosperma]	[more]
QRZ59571.1	1.1e-10	87.80	NADH-plastoquinone oxidoreductase subunit 2 [Vigna subterranea] >QRZ59586.1 NADH...	[more]
YP_001122857.1	1.1e-10	87.80	NADH-plastoquinone oxidoreductase subunit 2 [Phaseolus vulgaris] >YP_001165477.1...	[more]

BLAST of MS021828 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0CD28	1.5e-13	87.80	NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Phaseolus vulgaris ...	[more]
P0CD29	1.5e-13	87.80	NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Phaseolus vulgaris ...	[more]
P0CC98	4.3e-13	87.80	NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Nicotiana tabacum O...	[more]
P0CC99	4.3e-13	87.80	NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Nicotiana tabacum O...	[more]
P0CC32	5.6e-13	85.37	NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Arabidopsis thalian...	[more]

BLAST of MS021828 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0F7RPH5	5.5e-11	87.80	NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Vigna radiata var. ra...	[more]
A0A7T0GE43	5.5e-11	87.80	NADH-plastoquinone oxidoreductase subunit 2 OS=Lablab purpureus OX=35936 GN=ndhB...	[more]
A0A0F7RJU6	5.5e-11	87.80	NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Vigna radiata var. su...	[more]
N0DL12	5.5e-11	87.80	NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Phaseolus angularis O...	[more]
I2E2T0	5.5e-11	87.80	NADH-quinone oxidoreductase subunit N OS=Vigna unguiculata OX=3917 GN=ndhB PE=3 ...	[more]

BLAST of MS021828 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00890.1	2.6e-13	82.93	NADH-Ubiquinone/plastoquinone (complex I) protein	[more]
ATCG01250.1	2.6e-13	82.93	NADH-Ubiquinone/plastoquinone (complex I) protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001750	NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit	PFAM	PF00361	Proton_antipo_M	coord: 23..50 e-value: 9.3E-5 score: 21.8
None	No IPR available	PANTHER	PTHR22773	NADH DEHYDROGENASE	coord: 10..49
None	No IPR available	PANTHER	PTHR22773:SF105	NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT 2 B, CHLOROPLASTIC	coord: 10..49

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS021828.1	MS021828.1	mRNA