MS021815 (gene) Bitter gourd (TR) v1

Overview
NameMS021815
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold1: 521868 .. 522210 (+)
RNA-Seq ExpressionMS021815
SyntenyMS021815
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAACCAAGCAGCAAAACCAACAGCCTTTTGTTATTGTTAAAGTGGGCCTTAGACTTCTGCTTACCGCACAGCTCAGTGAATGGGATCTCACTGTTTTCAATGATTGCGAGCCGTTGTGGTTAAAAAGTGGATATCTGCCGTAATGAAAATGTCTCAAAGCTAATAAAAAACAAACCTTTTTTTTTTTCTTTTTTCCTGAGAATCCCCAATTATGATCCCGCGGTGGACGTCAGAGAGACGTGTTCATCGCTGCGTTTGGAGGAGTCTTCAGCAAATCTACTTTACAATCCTGTATGTGGAGAATCTGAAAAGGCAGTTAGAGAACAAAAGGATGAGTGCTTG

mRNA sequence

CAAACCAAGCAGCAAAACCAACAGCCTTTTGTTATTGTTAAAGTGGGCCTTAGACTTCTGCTTACCGCACAGCTCAGTGAATGGGATCTCACTGTTTTCAATGATTGCGAGCCGTTGTGGTTAAAAAGTGGATATCTGCCAATCCCCAATTATGATCCCGCGGTGGACGTCAGAGAGACGTGTTCATCGCTGCGTTTGGAGGAGTCTTCAGCAAATCTACTTTACAATCCTGTATGTGGAGAATCTGAAAAGGCAGTTAGAGAACAAAAGGATGAGTGCTTG

Coding sequence (CDS)

CAAACCAAGCAGCAAAACCAACAGCCTTTTGTTATTGTTAAAGTGGGCCTTAGACTTCTGCTTACCGCACAGCTCAGTGAATGGGATCTCACTGTTTTCAATGATTGCGAGCCGTTGTGGTTAAAAAGTGGATATCTGCCAATCCCCAATTATGATCCCGCGGTGGACGTCAGAGAGACGTGTTCATCGCTGCGTTTGGAGGAGTCTTCAGCAAATCTACTTTACAATCCTGTATGTGGAGAATCTGAAAAGGCAGTTAGAGAACAAAAGGATGAGTGCTTG

Protein sequence

QTKQQNQQPFVIVKVGLRLLLTAQLSEWDLTVFNDCEPLWLKSGYLPIPNYDPAVDVRETCSSLRLEESSANLLYNPVCGESEKAVREQKDECL
Homology
[Close]
BLAST of MS021815 vs. NCBI nr
Match: KGN55477.1 (hypothetical protein Csa_012711 [Cucumis sativus])

HSP 1 Score: 120.9 bits (302), Expect = 5.7e-24
Identity = 67/100 (67.00%), Postives = 72/100 (72.00%), Query Frame = 0 

Query: 1   QTKQQNQQPFVIVKVGLRLLLTAQLS---EWDL-TVFNDCEPLWLKSGYLPIPNYDPAVD 60
           Q   +NQQ FVIV+VGL LL TAQLS    WD  TVFNDCEPLWLKSGYLPIPNY PAVD
Sbjct: 17  QASSKNQQHFVIVQVGLTLLFTAQLSVDTGWDSHTVFNDCEPLWLKSGYLPIPNYAPAVD 76

Query: 61  VRET--CSSLRLEESSANLLYNPVCGESEKAVREQKDECL 95
           VRE    +   +     NLLYNP   ESEKAVREQK+ECL
Sbjct: 77  VREKEFIAGCCIWSLKKNLLYNPARRESEKAVREQKNECL 116

[Close]
BLAST of MS021815 vs. ExPASy TrEMBL
Match: A0A0A0L4F8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652890 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.8e-24
Identity = 67/100 (67.00%), Postives = 72/100 (72.00%), Query Frame = 0 

Query: 1   QTKQQNQQPFVIVKVGLRLLLTAQLS---EWDL-TVFNDCEPLWLKSGYLPIPNYDPAVD 60
           Q   +NQQ FVIV+VGL LL TAQLS    WD  TVFNDCEPLWLKSGYLPIPNY PAVD
Sbjct: 17  QASSKNQQHFVIVQVGLTLLFTAQLSVDTGWDSHTVFNDCEPLWLKSGYLPIPNYAPAVD 76

Query: 61  VRET--CSSLRLEESSANLLYNPVCGESEKAVREQKDECL 95
           VRE    +   +     NLLYNP   ESEKAVREQK+ECL
Sbjct: 77  VREKEFIAGCCIWSLKKNLLYNPARRESEKAVREQKNECL 116

The following BLAST results are available for this feature:
BLAST of MS021815 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN55477.15.7e-2467.00hypothetical protein Csa_012711 [Cucumis sativus][more]
BLAST of MS021815 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS021815 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L4F82.8e-2467.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652890 PE=4 SV=1[more]
BLAST of MS021815 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS021815.1MS021815.1mRNA