MS021810 (gene) Bitter gourd (TR) v1

Overview


Name	MS021810
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Large proline-rich protein BAG6 isoform X2
Location	scaffold1: 478081 .. 478404 (+)
RNA-Seq Expression	MS021810
Synteny	MS021810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCCCTCAGCTCCGTCAAGCTCAGCCCCTGAATTCCAATTGCCCAAAAAACCCCTTGGTCTGTTCGCAAACGCACTGAAACGCAAGGATAGCTTCATTCAGTTCTTCGCCATGACTGGTATTATGCTCTTAAGCGTCCGATCTTTGGGTCAGAAGTACCGTATCCACGACCTTCAAGAGGACACTTCGGCTCTCAAACAAGAACACGAAACCCTAATTGACCGTATGAAGAACATCAAGCGCAGCCTCCTTCACGAGGCATCCCTCGACCCCACCGGCTTCTTCGCATCCAGGTTTCGTCTTCTCTTCAGCGATGAAGAT

mRNA sequence

ATGGCTCCCTCAGCTCCGTCAAGCTCAGCCCCTGAATTCCAATTGCCCAAAAAACCCCTTGGTCTGTTCGCAAACGCACTGAAACGCAAGGATAGCTTCATTCAGTTCTTCGCCATGACTGGTATTATGCTCTTAAGCGTCCGATCTTTGGGTCAGAAGTACCGTATCCACGACCTTCAAGAGGACACTTCGGCTCTCAAACAAGAACACGAAACCCTAATTGACCGTATGAAGAACATCAAGCGCAGCCTCCTTCACGAGGCATCCCTCGACCCCACCGGCTTCTTCGCATCCAGGTTTCGTCTTCTCTTCAGCGATGAAGAT

Coding sequence (CDS)

ATGGCTCCCTCAGCTCCGTCAAGCTCAGCCCCTGAATTCCAATTGCCCAAAAAACCCCTTGGTCTGTTCGCAAACGCACTGAAACGCAAGGATAGCTTCATTCAGTTCTTCGCCATGACTGGTATTATGCTCTTAAGCGTCCGATCTTTGGGTCAGAAGTACCGTATCCACGACCTTCAAGAGGACACTTCGGCTCTCAAACAAGAACACGAAACCCTAATTGACCGTATGAAGAACATCAAGCGCAGCCTCCTTCACGAGGCATCCCTCGACCCCACCGGCTTCTTCGCATCCAGGTTTCGTCTTCTCTTCAGCGATGAAGAT

Protein sequence

MAPSAPSSSAPEFQLPKKPLGLFANALKRKDSFIQFFAMTGIMLLSVRSLGQKYRIHDLQEDTSALKQEHETLIDRMKNIKRSLLHEASLDPTGFFASRFRLLFSDED

Homology

[Close]

BLAST of MS021810 vs. NCBI nr
Match: XP_022142735.1 (uncharacterized protein LOC111012778 [Momordica charantia] >XP_022142744.1 uncharacterized protein LOC111012778 [Momordica charantia])

HSP 1 Score: 208.8 bits (530), Expect = 2.4e-50
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   MAPSAPSSSAPEFQLPKKPLGLFANALKRKDSFIQFFAMTGIMLLSVRSLGQKYRIHDLQ 60
           MAPSAPSSSAPEFQLPKKPLGLFANALKRKDSFIQFFAMTGIMLLSVRSLGQKYRIHDLQ
Sbjct: 1   MAPSAPSSSAPEFQLPKKPLGLFANALKRKDSFIQFFAMTGIMLLSVRSLGQKYRIHDLQ 60

Query: 61  EDTSALKQEHETLIDRMKNIKRSLLHEASLDPTGFFASRFRLLFSDED 109
           EDTSALKQEHETLIDRMKNIKRSLLHEASLDPTGFFASR RLLFSDED
Sbjct: 61  EDTSALKQEHETLIDRMKNIKRSLLHEASLDPTGFFASRLRLLFSDED 108

[Close]

BLAST of MS021810 vs. NCBI nr
Match: XP_023535555.1 (uncharacterized protein LOC111796960 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 191.4 bits (485), Expect = 4.0e-45
Identity = 98/108 (90.74%), Postives = 102/108 (94.44%), Query Frame = 0


Query: 1   MAPSAPSSSAPEFQLPKKPLGLFANALKRKDSFIQFFAMTGIMLLSVRSLGQKYRIHDLQ 60
           MAPS+PSSSAPEFQ+PKKPL LFANALKRKDSFIQFFAMTGI+LLSVRSLGQKYRIHDLQ
Sbjct: 1   MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLQ 60

Query: 61  EDTSALKQEHETLIDRMKNIKRSLLHEASLDPTGFFASRFRLLFSDED 109
           EDT+ALKQE ETLIDRMKNIKRSLLHEASLD TG FASR RLLFS ED
Sbjct: 61  EDTTALKQEQETLIDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQED 108

[Close]

BLAST of MS021810 vs. NCBI nr
Match: KAG6591237.1 (hypothetical protein SDJN03_13583, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024121.1 hypothetical protein SDJN02_12934, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 190.3 bits (482), Expect = 8.8e-45
Identity = 97/108 (89.81%), Postives = 102/108 (94.44%), Query Frame = 0


Query: 1   MAPSAPSSSAPEFQLPKKPLGLFANALKRKDSFIQFFAMTGIMLLSVRSLGQKYRIHDLQ 60
           MAPS+PSSSAPEFQ+PKKPL LFANALKRKDSFIQFFAMTGI+LLSVRSLGQKYRIHDLQ
Sbjct: 1   MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLQ 60

Query: 61  EDTSALKQEHETLIDRMKNIKRSLLHEASLDPTGFFASRFRLLFSDED 109
           EDT+ALKQE ETLIDRMKNIKRSLLHEASLD TG FASR RLLF+ ED
Sbjct: 61  EDTTALKQEQETLIDRMKNIKRSLLHEASLDSTGLFASRLRLLFTQED 108

[Close]

BLAST of MS021810 vs. NCBI nr
Match: XP_022936518.1 (uncharacterized protein LOC111443106 [Cucurbita moschata])

HSP 1 Score: 190.3 bits (482), Expect = 8.8e-45
Identity = 97/108 (89.81%), Postives = 102/108 (94.44%), Query Frame = 0


Query: 1   MAPSAPSSSAPEFQLPKKPLGLFANALKRKDSFIQFFAMTGIMLLSVRSLGQKYRIHDLQ 60
           MAPS+PSSSAPEFQ+PKKPL LFANALKRKDSFIQFFAMTGI+LLSVRSLGQKYRIHDLQ
Sbjct: 1   MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLQ 60

Query: 61  EDTSALKQEHETLIDRMKNIKRSLLHEASLDPTGFFASRFRLLFSDED 109
           EDT+ALKQE ETL+DRMKNIKRSLLHEASLD TG FASR RLLFS ED
Sbjct: 61  EDTTALKQEQETLMDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQED 108

[Close]

BLAST of MS021810 vs. NCBI nr
Match: XP_038897763.1 (uncharacterized protein LOC120085692 [Benincasa hispida])

HSP 1 Score: 188.7 bits (478), Expect = 2.6e-44
Identity = 97/108 (89.81%), Postives = 101/108 (93.52%), Query Frame = 0


Query: 1   MAPSAPSSSAPEFQLPKKPLGLFANALKRKDSFIQFFAMTGIMLLSVRSLGQKYRIHDLQ 60
           MAPSAPSSSAPEFQ PKKPL LFANALKRKDSFIQFFAMTGI+LLS RSLGQKYRIHDLQ
Sbjct: 1   MAPSAPSSSAPEFQTPKKPLSLFANALKRKDSFIQFFAMTGILLLSFRSLGQKYRIHDLQ 60

Query: 61  EDTSALKQEHETLIDRMKNIKRSLLHEASLDPTGFFASRFRLLFSDED 109
           EDT+ALKQE ETLIDRMKNIKRSLLHEASL+ TG FASR RLLFS+ED
Sbjct: 61  EDTTALKQEQETLIDRMKNIKRSLLHEASLESTGLFASRLRLLFSEED 108

[Close]

BLAST of MS021810 vs. ExPASy TrEMBL
Match: A0A6J1CMC7 (uncharacterized protein LOC111012778 OS=Momordica charantia OX=3673 GN=LOC111012778 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.2e-50
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   MAPSAPSSSAPEFQLPKKPLGLFANALKRKDSFIQFFAMTGIMLLSVRSLGQKYRIHDLQ 60
           MAPSAPSSSAPEFQLPKKPLGLFANALKRKDSFIQFFAMTGIMLLSVRSLGQKYRIHDLQ
Sbjct: 1   MAPSAPSSSAPEFQLPKKPLGLFANALKRKDSFIQFFAMTGIMLLSVRSLGQKYRIHDLQ 60

Query: 61  EDTSALKQEHETLIDRMKNIKRSLLHEASLDPTGFFASRFRLLFSDED 109
           EDTSALKQEHETLIDRMKNIKRSLLHEASLDPTGFFASR RLLFSDED
Sbjct: 61  EDTSALKQEHETLIDRMKNIKRSLLHEASLDPTGFFASRLRLLFSDED 108

[Close]

BLAST of MS021810 vs. ExPASy TrEMBL
Match: A0A6J1FDG4 (uncharacterized protein LOC111443106 OS=Cucurbita moschata OX=3662 GN=LOC111443106 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 4.3e-45
Identity = 97/108 (89.81%), Postives = 102/108 (94.44%), Query Frame = 0


Query: 1   MAPSAPSSSAPEFQLPKKPLGLFANALKRKDSFIQFFAMTGIMLLSVRSLGQKYRIHDLQ 60
           MAPS+PSSSAPEFQ+PKKPL LFANALKRKDSFIQFFAMTGI+LLSVRSLGQKYRIHDLQ
Sbjct: 1   MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMTGILLLSVRSLGQKYRIHDLQ 60

Query: 61  EDTSALKQEHETLIDRMKNIKRSLLHEASLDPTGFFASRFRLLFSDED 109
           EDT+ALKQE ETL+DRMKNIKRSLLHEASLD TG FASR RLLFS ED
Sbjct: 61  EDTTALKQEQETLMDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQED 108

[Close]

BLAST of MS021810 vs. ExPASy TrEMBL
Match: A0A6J1IKL0 (uncharacterized protein LOC111476471 OS=Cucurbita maxima OX=3661 GN=LOC111476471 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.2e-44
Identity = 96/108 (88.89%), Postives = 102/108 (94.44%), Query Frame = 0


Query: 1   MAPSAPSSSAPEFQLPKKPLGLFANALKRKDSFIQFFAMTGIMLLSVRSLGQKYRIHDLQ 60
           MAPS+PSSSAPEFQ+PKKPL LFANALKRKDSFIQFFAM+GI+LLSVRSLGQKYRIHDLQ
Sbjct: 1   MAPSSPSSSAPEFQMPKKPLSLFANALKRKDSFIQFFAMSGILLLSVRSLGQKYRIHDLQ 60

Query: 61  EDTSALKQEHETLIDRMKNIKRSLLHEASLDPTGFFASRFRLLFSDED 109
           EDT+ALKQE ETLIDRMKNIKRSLLHEASLD TG FASR RLLFS +D
Sbjct: 61  EDTTALKQEQETLIDRMKNIKRSLLHEASLDSTGLFASRLRLLFSQDD 108

[Close]

BLAST of MS021810 vs. ExPASy TrEMBL
Match: A0A0A0L5S3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G653420 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 6.8e-43
Identity = 93/108 (86.11%), Postives = 100/108 (92.59%), Query Frame = 0


Query: 1   MAPSAPSSSAPEFQLPKKPLGLFANALKRKDSFIQFFAMTGIMLLSVRSLGQKYRIHDLQ 60
           MAPSAPSSS PEFQ+ KKPLGL+ANALKRKDSFIQ  AMTGI+LLS RSLGQKYRI+DLQ
Sbjct: 1   MAPSAPSSSTPEFQMSKKPLGLYANALKRKDSFIQLLAMTGILLLSFRSLGQKYRINDLQ 60

Query: 61  EDTSALKQEHETLIDRMKNIKRSLLHEASLDPTGFFASRFRLLFSDED 109
           EDT+ALKQEHETL+DRMKNIKRSLLHEASL+ TG FASR RLLFSDED
Sbjct: 61  EDTTALKQEHETLVDRMKNIKRSLLHEASLESTGHFASRLRLLFSDED 108

[Close]

BLAST of MS021810 vs. ExPASy TrEMBL
Match: A0A1S3BW63 (uncharacterized protein LOC103493794 OS=Cucumis melo OX=3656 GN=LOC103493794 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 9.2e-40
Identity = 87/108 (80.56%), Postives = 95/108 (87.96%), Query Frame = 0


Query: 1   MAPSAPSSSAPEFQLPKKPLGLFANALKRKDSFIQFFAMTGIMLLSVRSLGQKYRIHDLQ 60
           MAPSAPSSS PEFQ+ KKPLG +AN LK KD  IQ  AMTGI+LLS RSLGQKYRI++LQ
Sbjct: 1   MAPSAPSSSTPEFQMSKKPLGFYANVLKHKDGLIQLLAMTGILLLSCRSLGQKYRINNLQ 60

Query: 61  EDTSALKQEHETLIDRMKNIKRSLLHEASLDPTGFFASRFRLLFSDED 109
           EDT+ALKQEHETL+DRMKNIKRSLLHEASL+ TG FASR RLLFSDED
Sbjct: 61  EDTTALKQEHETLVDRMKNIKRSLLHEASLESTGLFASRLRLLFSDED 108

[Close]

BLAST of MS021810 vs. TAIR 10
Match: AT1G20430.1 (unknown protein; Has 29 Blast hits to 29 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 112.8 bits (281), Expect = 1.7e-25
Identity = 62/114 (54.39%), Postives = 74/114 (64.91%), Query Frame = 0


Query: 1   MAPSAPSSSA-------PEFQLPKKPLGLFANALKRKDSFIQFFAMTGIMLLSVRSLGQK 60
           MA SAP  S        P   L     G F N  K K SF QF AMTGI+LLS RS+ QK
Sbjct: 1   MASSAPQGSVDPLTGKDPAKALTAVASGFFENVKKNKQSFFQFAAMTGILLLSFRSVSQK 60

Query: 61  YRIHDLQEDTSALKQEHETLIDRMKNIKRSLLHEASLDPTGFFASRFRLLFSDE 108
           YRIHDL+EDT+ LK+E ++L DRM  IK  LLH+AS+D +G FASR RLLF ++
Sbjct: 61  YRIHDLEEDTAVLKKEQDSLTDRMSKIKSDLLHQASIDSSGVFASRLRLLFGED 114

The following BLAST results are available for this feature:

BLAST of MS021810 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022142735.1	2.4e-50	99.07	uncharacterized protein LOC111012778 [Momordica charantia] >XP_022142744.1 uncha...	[more]
XP_023535555.1	4.0e-45	90.74	uncharacterized protein LOC111796960 [Cucurbita pepo subsp. pepo]	[more]
KAG6591237.1	8.8e-45	89.81	hypothetical protein SDJN03_13583, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022936518.1	8.8e-45	89.81	uncharacterized protein LOC111443106 [Cucurbita moschata]	[more]
XP_038897763.1	2.6e-44	89.81	uncharacterized protein LOC120085692 [Benincasa hispida]	[more]

BLAST of MS021810 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS021810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CMC7	1.2e-50	99.07	uncharacterized protein LOC111012778 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]
A0A6J1FDG4	4.3e-45	89.81	uncharacterized protein LOC111443106 OS=Cucurbita moschata OX=3662 GN=LOC1114431...	[more]
A0A6J1IKL0	1.2e-44	88.89	uncharacterized protein LOC111476471 OS=Cucurbita maxima OX=3661 GN=LOC111476471...	[more]
A0A0A0L5S3	6.8e-43	86.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G653420 PE=4 SV=1	[more]
A0A1S3BW63	9.2e-40	80.56	uncharacterized protein LOC103493794 OS=Cucumis melo OX=3656 GN=LOC103493794 PE=...	[more]

BLAST of MS021810 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G20430.1	1.7e-25	54.39	unknown protein; Has 29 Blast hits to 29 proteins in 10 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 56..76
None	No IPR available	PANTHER	PTHR36316:SF1	OS06G0213900 PROTEIN	coord: 1..107
None	No IPR available	PANTHER	PTHR36316	OS06G0213900 PROTEIN	coord: 1..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS021810.1	MS021810.1	mRNA