MS021809 (gene) Bitter gourd (TR) v1

Overview


Name	MS021809
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	large proline-rich protein BAG6 isoform X2
Location	scaffold1: 475993 .. 476602 (+)
RNA-Seq Expression	MS021809
Synteny	MS021809

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAGATCTGCCAAGGGTGGAACTGCCTACCAATCCCCATGATTTGCCAACTCCTGAATCTTTGGGGCTTGTCTTGCGACATGCTCAACAGCTTCTAAGTGATTATGCCACCACTTCCTTACCGGTAAGTATTATGGCCATTGTTCTCACCATTAATGAAACGATTATGAGTTTTTTTTAGGACCCGTTTGGTAATATTCTCGTTTTCAATTTTTATTAAGAAATTTTAAAAATTGTATAGAAATTTTGAAAACAACGAAAACAAGTTTATTGTTTCTTATTTCTGTTTCTTATTTATCCCAAAACATAAATAAAAATATAGTTTTGTCATTTTTGAATCCATGACGTTGAAGCATTGTAATAATGGCCTTAAATACTGCTCATAAGTACTTATGTTATGTGTTATGTTATTATGGTGTCTTGTGGAAAAATATTGTTTATTAAAGAGAATTGTTGAGCGATTGGAGCAAGAGGGGTGTTCTAGTGATCCAAATGTGAGGGCTCAAATCCAGGAAGAGTTGGTTCAAGTAGGACTTAGTATGCGACAATTTGGAGCCCTTCTTCTCGAACTTGGTCGTACGATCTTGACCTTTCGCATGGGACAATCACCC

mRNA sequence

GGAGATCTGCCAAGGGTGGAACTGCCTACCAATCCCCATGATTTGCCAACTCCTGAATCTTTGGGGCTTGTCTTGCGACATGCTCAACAGCTTCTAAGTGATTATGCCACCACTTCCTTACCGAGAATTGTTGAGCGATTGGAGCAAGAGGGGTGTTCTAGTGATCCAAATGTGAGGGCTCAAATCCAGGAAGAGTTGGTTCAAGTAGGACTTAGTATGCGACAATTTGGAGCCCTTCTTCTCGAACTTGGTCGTACGATCTTGACCTTTCGCATGGGACAATCACCC

Coding sequence (CDS)

GGAGATCTGCCAAGGGTGGAACTGCCTACCAATCCCCATGATTTGCCAACTCCTGAATCTTTGGGGCTTGTCTTGCGACATGCTCAACAGCTTCTAAGTGATTATGCCACCACTTCCTTACCGAGAATTGTTGAGCGATTGGAGCAAGAGGGGTGTTCTAGTGATCCAAATGTGAGGGCTCAAATCCAGGAAGAGTTGGTTCAAGTAGGACTTAGTATGCGACAATTTGGAGCCCTTCTTCTCGAACTTGGTCGTACGATCTTGACCTTTCGCATGGGACAATCACCC

Protein sequence

GDLPRVELPTNPHDLPTPESLGLVLRHAQQLLSDYATTSLPRIVERLEQEGCSSDPNVRAQIQEELVQVGLSMRQFGALLLELGRTILTFRMGQSP

Homology

[Close]

BLAST of MS021809 vs. NCBI nr
Match: XP_022140796.1 (uncharacterized protein LOC111011363 isoform X2 [Momordica charantia])

HSP 1 Score: 191.0 bits (484), Expect = 4.6e-45
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1   GDLPRVELPTNPHDLPTPESLGLVLRHAQQLLSDYATTSLPRIVERLEQEGCSSDPNVRA 60
           GDLPRVELPTNPHDLPTPESLGLVLRHAQQLLSDYATTSLPRIVERLEQEGCSSDPNVRA
Sbjct: 12  GDLPRVELPTNPHDLPTPESLGLVLRHAQQLLSDYATTSLPRIVERLEQEGCSSDPNVRA 71

Query: 61  QIQEELVQVGLSMRQFGALLLELGRTILTFRMGQSP 97
           QIQEELVQVGLSMRQFGALLLELGRTILTFRMGQSP
Sbjct: 72  QIQEELVQVGLSMRQFGALLLELGRTILTFRMGQSP 107

[Close]

BLAST of MS021809 vs. NCBI nr
Match: XP_022140788.1 (uncharacterized protein LOC111011363 isoform X1 [Momordica charantia])

HSP 1 Score: 191.0 bits (484), Expect = 4.6e-45
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1   GDLPRVELPTNPHDLPTPESLGLVLRHAQQLLSDYATTSLPRIVERLEQEGCSSDPNVRA 60
           GDLPRVELPTNPHDLPTPESLGLVLRHAQQLLSDYATTSLPRIVERLEQEGCSSDPNVRA
Sbjct: 13  GDLPRVELPTNPHDLPTPESLGLVLRHAQQLLSDYATTSLPRIVERLEQEGCSSDPNVRA 72

Query: 61  QIQEELVQVGLSMRQFGALLLELGRTILTFRMGQSP 97
           QIQEELVQVGLSMRQFGALLLELGRTILTFRMGQSP
Sbjct: 73  QIQEELVQVGLSMRQFGALLLELGRTILTFRMGQSP 108

[Close]

BLAST of MS021809 vs. NCBI nr
Match: XP_038898029.1 (ubiquitin-like domain-containing protein CIP73 isoform X1 [Benincasa hispida])

HSP 1 Score: 145.2 bits (365), Expect = 2.9e-31
Identity = 74/96 (77.08%), Postives = 81/96 (84.38%), Query Frame = 0


Query: 1   GDLPRVELPTNPHDLPTPESLGLVLRHAQQLLSDYATTSLPRIVERLEQEGCSSDPNVRA 60
           GDL RVELPTNP  LPT ESL +VLRHAQ+LLSDYA +SL RI ERLEQ+  S+DP VR 
Sbjct: 269 GDLTRVELPTNPQGLPTTESLSIVLRHAQRLLSDYAISSLSRIAERLEQDSSSTDPTVRG 328

Query: 61  QIQEELVQVGLSMRQFGALLLELGRTILTFRMGQSP 97
           QIQEE VQ+GL M+QFGALLLELGRTILT RMGQSP
Sbjct: 329 QIQEESVQIGLRMQQFGALLLELGRTILTLRMGQSP 364

[Close]

BLAST of MS021809 vs. NCBI nr
Match: XP_038898030.1 (ubiquitin-like domain-containing protein CIP73 isoform X2 [Benincasa hispida])

HSP 1 Score: 145.2 bits (365), Expect = 2.9e-31
Identity = 74/96 (77.08%), Postives = 81/96 (84.38%), Query Frame = 0


Query: 1   GDLPRVELPTNPHDLPTPESLGLVLRHAQQLLSDYATTSLPRIVERLEQEGCSSDPNVRA 60
           GDL RVELPTNP  LPT ESL +VLRHAQ+LLSDYA +SL RI ERLEQ+  S+DP VR 
Sbjct: 269 GDLTRVELPTNPQGLPTTESLSIVLRHAQRLLSDYAISSLSRIAERLEQDSSSTDPTVRG 328

Query: 61  QIQEELVQVGLSMRQFGALLLELGRTILTFRMGQSP 97
           QIQEE VQ+GL M+QFGALLLELGRTILT RMGQSP
Sbjct: 329 QIQEESVQIGLRMQQFGALLLELGRTILTLRMGQSP 364

[Close]

BLAST of MS021809 vs. NCBI nr
Match: XP_008452934.1 (PREDICTED: large proline-rich protein bag6-B isoform X1 [Cucumis melo])

HSP 1 Score: 144.4 bits (363), Expect = 4.9e-31
Identity = 74/96 (77.08%), Postives = 81/96 (84.38%), Query Frame = 0


Query: 1   GDLPRVELPTNPHDLPTPESLGLVLRHAQQLLSDYATTSLPRIVERLEQEGCSSDPNVRA 60
           GDL RVELPTNP  LPT ESL +VLRHAQ+LLSDYA +SL RI ERLEQ+  S+DP VR 
Sbjct: 271 GDLTRVELPTNPQGLPTTESLSIVLRHAQRLLSDYAISSLSRIAERLEQDSSSTDPTVRG 330

Query: 61  QIQEELVQVGLSMRQFGALLLELGRTILTFRMGQSP 97
           QIQEE VQVGL M+QFG+LLLELGRTILT RMGQSP
Sbjct: 331 QIQEESVQVGLRMQQFGSLLLELGRTILTLRMGQSP 366

[Close]

BLAST of MS021809 vs. ExPASy Swiss-Prot
Match: D5LXJ0 (Ubiquitin-like domain-containing protein CIP73 OS=Lotus japonicus OX=34305 GN=CIP73 PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 8.0e-08
Identity = 31/89 (34.83%), Postives = 49/89 (55.06%), Query Frame = 0


Query: 8   LPTNPHDLPTPESLGLVLRHAQQLLSDYATTSLPRIVERLEQEGCSSDPNVRAQIQEELV 67
           L + P  L +P SL  VL   ++++ + A   L ++  +LE     +DP  R+  Q   +
Sbjct: 275 LSSTPEGLSSPASLAEVLLSTRRVIIEQAGECLLQLARQLENHADIADPLSRSSTQSRAL 334

Query: 68  QVGLSMRQFGALLLELGRTILTFRMGQSP 97
           + G+     GA LLELGRT +T R+GQ+P
Sbjct: 335 RTGVMFYNLGAYLLELGRTTMTLRLGQTP 363

[Close]

BLAST of MS021809 vs. ExPASy TrEMBL
Match: A0A6J1CIT7 (uncharacterized protein LOC111011363 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111011363 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 2.2e-45
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1   GDLPRVELPTNPHDLPTPESLGLVLRHAQQLLSDYATTSLPRIVERLEQEGCSSDPNVRA 60
           GDLPRVELPTNPHDLPTPESLGLVLRHAQQLLSDYATTSLPRIVERLEQEGCSSDPNVRA
Sbjct: 13  GDLPRVELPTNPHDLPTPESLGLVLRHAQQLLSDYATTSLPRIVERLEQEGCSSDPNVRA 72

Query: 61  QIQEELVQVGLSMRQFGALLLELGRTILTFRMGQSP 97
           QIQEELVQVGLSMRQFGALLLELGRTILTFRMGQSP
Sbjct: 73  QIQEELVQVGLSMRQFGALLLELGRTILTFRMGQSP 108

[Close]

BLAST of MS021809 vs. ExPASy TrEMBL
Match: A0A6J1CH42 (uncharacterized protein LOC111011363 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111011363 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 2.2e-45
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1   GDLPRVELPTNPHDLPTPESLGLVLRHAQQLLSDYATTSLPRIVERLEQEGCSSDPNVRA 60
           GDLPRVELPTNPHDLPTPESLGLVLRHAQQLLSDYATTSLPRIVERLEQEGCSSDPNVRA
Sbjct: 12  GDLPRVELPTNPHDLPTPESLGLVLRHAQQLLSDYATTSLPRIVERLEQEGCSSDPNVRA 71

Query: 61  QIQEELVQVGLSMRQFGALLLELGRTILTFRMGQSP 97
           QIQEELVQVGLSMRQFGALLLELGRTILTFRMGQSP
Sbjct: 72  QIQEELVQVGLSMRQFGALLLELGRTILTFRMGQSP 107

[Close]

BLAST of MS021809 vs. ExPASy TrEMBL
Match: A0A5D3D8S3 (Large proline-rich protein bag6-B isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00800 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.4e-31
Identity = 74/96 (77.08%), Postives = 81/96 (84.38%), Query Frame = 0


Query: 1   GDLPRVELPTNPHDLPTPESLGLVLRHAQQLLSDYATTSLPRIVERLEQEGCSSDPNVRA 60
           GDL RVELPTNP  LPT ESL +VLRHAQ+LLSDYA +SL RI ERLEQ+  S+DP VR 
Sbjct: 854 GDLTRVELPTNPQGLPTTESLSIVLRHAQRLLSDYAISSLSRIAERLEQDSSSTDPTVRG 913

Query: 61  QIQEELVQVGLSMRQFGALLLELGRTILTFRMGQSP 97
           QIQEE VQVGL M+QFG+LLLELGRTILT RMGQSP
Sbjct: 914 QIQEESVQVGLRMQQFGSLLLELGRTILTLRMGQSP 949

[Close]

BLAST of MS021809 vs. ExPASy TrEMBL
Match: A0A5A7VCC0 (Large proline-rich protein bag6-B isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G003500 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.4e-31
Identity = 74/96 (77.08%), Postives = 81/96 (84.38%), Query Frame = 0


Query: 1   GDLPRVELPTNPHDLPTPESLGLVLRHAQQLLSDYATTSLPRIVERLEQEGCSSDPNVRA 60
           GDL RVELPTNP  LPT ESL +VLRHAQ+LLSDYA +SL RI ERLEQ+  S+DP VR 
Sbjct: 854 GDLTRVELPTNPQGLPTTESLSIVLRHAQRLLSDYAISSLSRIAERLEQDSSSTDPTVRG 913

Query: 61  QIQEELVQVGLSMRQFGALLLELGRTILTFRMGQSP 97
           QIQEE VQVGL M+QFG+LLLELGRTILT RMGQSP
Sbjct: 914 QIQEESVQVGLRMQQFGSLLLELGRTILTLRMGQSP 949

[Close]

BLAST of MS021809 vs. ExPASy TrEMBL
Match: A0A1S3BVT8 (large proline-rich protein bag6-B isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493796 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.4e-31
Identity = 74/96 (77.08%), Postives = 81/96 (84.38%), Query Frame = 0


Query: 1   GDLPRVELPTNPHDLPTPESLGLVLRHAQQLLSDYATTSLPRIVERLEQEGCSSDPNVRA 60
           GDL RVELPTNP  LPT ESL +VLRHAQ+LLSDYA +SL RI ERLEQ+  S+DP VR 
Sbjct: 271 GDLTRVELPTNPQGLPTTESLSIVLRHAQRLLSDYAISSLSRIAERLEQDSSSTDPTVRG 330

Query: 61  QIQEELVQVGLSMRQFGALLLELGRTILTFRMGQSP 97
           QIQEE VQVGL M+QFG+LLLELGRTILT RMGQSP
Sbjct: 331 QIQEESVQVGLRMQQFGSLLLELGRTILTLRMGQSP 366

[Close]

BLAST of MS021809 vs. TAIR 10
Match: AT5G42220.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 110.2 bits (274), Expect = 9.6e-25
Identity = 59/96 (61.46%), Postives = 68/96 (70.83%), Query Frame = 0


Query: 1   GDLPRVELPTNPHDLPTPESLGLVLRHAQQLLSDYATTSLPRIVERLEQEGCSSDPNVRA 60
           G  PR ELP N     TPE+L +VLR+AQ LLS    +SL  I  RLEQ+G SSDP +R+
Sbjct: 283 GGRPREELPRNRRGAATPEALSVVLRNAQHLLSGLGVSSLSHIAGRLEQDGSSSDPTLRS 342

Query: 61  QIQEELVQVGLSMRQFGALLLELGRTILTFRMGQSP 97
           QIQ E VQVGL+M+  GALLLELGRTILT RM  SP
Sbjct: 343 QIQTEAVQVGLAMQHLGALLLELGRTILTLRMAPSP 378

[Close]

BLAST of MS021809 vs. TAIR 10
Match: AT5G25270.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 47.4 bits (111), Expect = 7.7e-06
Identity = 28/87 (32.18%), Postives = 40/87 (45.98%), Query Frame = 0


Query: 10  TNPHDLPTPESLGLVLRHAQQLLSDYATTSLPRIVERLEQEGCSSDPNVRAQIQEELVQV 69
           T    +P P  L  VL+  +QLL       L  +  +L      +DP  R   Q  ++Q 
Sbjct: 256 TGESRIPRPSHLAEVLQSTRQLLIGEVADCLSNLSRQLVDHVNVTDPPTRRLCQSNMLQS 315

Query: 70  GLSMRQFGALLLELGRTILTFRMGQSP 97
           G  +   G  LLELGR  +  R+GQ+P
Sbjct: 316 GSLLESLGISLLELGRATMMLRLGQTP 342

The following BLAST results are available for this feature:

BLAST of MS021809 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022140796.1	4.6e-45	100.00	uncharacterized protein LOC111011363 isoform X2 [Momordica charantia]	[more]
XP_022140788.1	4.6e-45	100.00	uncharacterized protein LOC111011363 isoform X1 [Momordica charantia]	[more]
XP_038898029.1	2.9e-31	77.08	ubiquitin-like domain-containing protein CIP73 isoform X1 [Benincasa hispida]	[more]
XP_038898030.1	2.9e-31	77.08	ubiquitin-like domain-containing protein CIP73 isoform X2 [Benincasa hispida]	[more]
XP_008452934.1	4.9e-31	77.08	PREDICTED: large proline-rich protein bag6-B isoform X1 [Cucumis melo]	[more]

BLAST of MS021809 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
D5LXJ0	8.0e-08	34.83	Ubiquitin-like domain-containing protein CIP73 OS=Lotus japonicus OX=34305 GN=CI...	[more]

BLAST of MS021809 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CIT7	2.2e-45	100.00	uncharacterized protein LOC111011363 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1CH42	2.2e-45	100.00	uncharacterized protein LOC111011363 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A5D3D8S3	2.4e-31	77.08	Large proline-rich protein bag6-B isoform X1 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A5A7VCC0	2.4e-31	77.08	Large proline-rich protein bag6-B isoform X1 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3BVT8	2.4e-31	77.08	large proline-rich protein bag6-B isoform X1 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]

BLAST of MS021809 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G42220.1	9.6e-25	61.46	Ubiquitin-like superfamily protein	[more]
AT5G25270.1	7.7e-06	32.18	Ubiquitin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR15204:SF5	OS07G0498800 PROTEIN	coord: 2..96
None	No IPR available	PANTHER	PTHR15204	LARGE PROLINE-RICH PROTEIN BAG6	coord: 2..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS021809.1	MS021809.1	mRNA