MS021772 (gene) Bitter gourd (TR) v1

Overview


Name	MS021772
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	RING-H2 finger protein ATL80-like
Location	scaffold1: 270444 .. 271007 (-)
RNA-Seq Expression	MS021772
Synteny	MS021772

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCCTCATGCGTCCCTTCAGGTACCTCGCCGGTGACAACTCCTCGGCGACTTCCGACTCGGCGGAGCCCGAGAGATACGACTCCGACTTCGTCATAATCCTCGCAGCCCTACTCTGCGCCTTAATCTGCGTTCTCGGTCTCGTTGCGGTGGCCCGCTGCGCCTGGCTCCGTCACCTCACCGGCGATGGCGGCGGCACCTCTTCCACTCGTCCTCCTCCGCCTCCTGCCTCAAACAAAGGTCTCAAGAAGAAGATCCTCAGATCTCTTCCCAAGCACACCTTCACTGCTGAGTTTGCCGGTCAATTCTCAGATTGCGCGATCTGCCTCGCGGAGTTCGCTGTCGGTGATGAAATCCGGGTGCTGCCGCAGTGCGGCCACGGCTTTCACGTGGCCTGCATCGATACCTGGTTCCGATCTCACTCCTCGTGCCCTTCGTGCCGTCAGATTCTGGTGGTGAATCAGTGCCAGAAGTGCGGGGGTTTCCCGGCGAGCTCGAGTTCGAACGCTGGGACCGAATCCAGAGTAAAAGAAGGAGGAGAAGATAAGGCAAATAGGTTCTTACCT

mRNA sequence

CTCCTCATGCGTCCCTTCAGGTACCTCGCCGGTGACAACTCCTCGGCGACTTCCGACTCGGCGGAGCCCGAGAGATACGACTCCGACTTCGTCATAATCCTCGCAGCCCTACTCTGCGCCTTAATCTGCGTTCTCGGTCTCGTTGCGGTGGCCCGCTGCGCCTGGCTCCGTCACCTCACCGGCGATGGCGGCGGCACCTCTTCCACTCGTCCTCCTCCGCCTCCTGCCTCAAACAAAGGTCTCAAGAAGAAGATCCTCAGATCTCTTCCCAAGCACACCTTCACTGCTGAGTTTGCCGGTCAATTCTCAGATTGCGCGATCTGCCTCGCGGAGTTCGCTGTCGGTGATGAAATCCGGGTGCTGCCGCAGTGCGGCCACGGCTTTCACGTGGCCTGCATCGATACCTGGTTCCGATCTCACTCCTCGTGCCCTTCGTGCCGTCAGATTCTGGTGGTGAATCAGTGCCAGAAGTGCGGGGGTTTCCCGGCGAGCTCGAGTTCGAACGCTGGGACCGAATCCAGAGTAAAAGAAGGAGGAGAAGATAAGGCAAATAGGTTCTTACCT

Coding sequence (CDS)

CTCCTCATGCGTCCCTTCAGGTACCTCGCCGGTGACAACTCCTCGGCGACTTCCGACTCGGCGGAGCCCGAGAGATACGACTCCGACTTCGTCATAATCCTCGCAGCCCTACTCTGCGCCTTAATCTGCGTTCTCGGTCTCGTTGCGGTGGCCCGCTGCGCCTGGCTCCGTCACCTCACCGGCGATGGCGGCGGCACCTCTTCCACTCGTCCTCCTCCGCCTCCTGCCTCAAACAAAGGTCTCAAGAAGAAGATCCTCAGATCTCTTCCCAAGCACACCTTCACTGCTGAGTTTGCCGGTCAATTCTCAGATTGCGCGATCTGCCTCGCGGAGTTCGCTGTCGGTGATGAAATCCGGGTGCTGCCGCAGTGCGGCCACGGCTTTCACGTGGCCTGCATCGATACCTGGTTCCGATCTCACTCCTCGTGCCCTTCGTGCCGTCAGATTCTGGTGGTGAATCAGTGCCAGAAGTGCGGGGGTTTCCCGGCGAGCTCGAGTTCGAACGCTGGGACCGAATCCAGAGTAAAAGAAGGAGGAGAAGATAAGGCAAATAGGTTCTTACCT

Protein sequence

LLMRPFRYLAGDNSSATSDSAEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLTGDGGGTSSTRPPPPPASNKGLKKKILRSLPKHTFTAEFAGQFSDCAICLAEFAVGDEIRVLPQCGHGFHVACIDTWFRSHSSCPSCRQILVVNQCQKCGGFPASSSSNAGTESRVKEGGEDKANRFLP

Homology

[Close]

BLAST of MS021772 vs. NCBI nr
Match: XP_004145558.1 (RING-H2 finger protein ATL8 [Cucumis sativus] >KGN55526.1 hypothetical protein Csa_012171 [Cucumis sativus])

HSP 1 Score: 348.2 bits (892), Expect = 4.4e-92
Identity = 169/186 (90.86%), Postives = 176/186 (94.62%), Query Frame = 0


Query: 3   MRPFRYLAGDNSSATSDSAEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLTGD 62
           MRPFRYLAG NSSATSD+ EP RYDSDFVIILAALLCALICVLGLVAVARCAWLRHL GD
Sbjct: 1   MRPFRYLAGVNSSATSDTFEP-RYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD 60

Query: 63  GGGTSSTRPPPPPASNKGLKKKILRSLPKHTFTAEFAGQFSDCAICLAEFAVGDEIRVLP 122
           GGG  STRPPPPPASNKGLKKKILRSLPK+TFTAEF+ QFSDCAICLAEFAVGDEIRVLP
Sbjct: 61  GGGAGSTRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLP 120

Query: 123 QCGHGFHVACIDTWFRSHSSCPSCRQILVVNQCQKCGGFPASSSSNAGTESRVKEGGEDK 182
           QCGHGFH++CIDTWFRSHSSCPSCRQILVV+QCQKCGGFPASSSSN GTESRVKE G+DK
Sbjct: 121 QCGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDK 180

Query: 183 ANRFLP 189
            NRFLP
Sbjct: 181 TNRFLP 185

[Close]

BLAST of MS021772 vs. NCBI nr
Match: KAG6608649.1 (RING-H2 finger protein ATL80, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037966.1 RING-H2 finger protein ATL80, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 347.8 bits (891), Expect = 5.8e-92
Identity = 167/186 (89.78%), Postives = 174/186 (93.55%), Query Frame = 0


Query: 3   MRPFRYLAGDNSSATSDSAEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLTGD 62
           MRPFRYLA  NSS+ SD+ EPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHL GD
Sbjct: 1   MRPFRYLADANSSSISDTVEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD 60

Query: 63  GGGTSSTRPPPPPASNKGLKKKILRSLPKHTFTAEFAGQFSDCAICLAEFAVGDEIRVLP 122
           GGG +STRPPPPPASNKGLKKKILRSLPK+TFTAEFA QFSDCAICLAEF VGDEIRVLP
Sbjct: 61  GGGAASTRPPPPPASNKGLKKKILRSLPKYTFTAEFAAQFSDCAICLAEFVVGDEIRVLP 120

Query: 123 QCGHGFHVACIDTWFRSHSSCPSCRQILVVNQCQKCGGFPASSSSNAGTESRVKEGGEDK 182
           QCGHGFHV+CIDTWFRSHSSCPSCRQILV +QCQKCGGFPASSSSN GTESRVK+ GEDK
Sbjct: 121 QCGHGFHVSCIDTWFRSHSSCPSCRQILVGSQCQKCGGFPASSSSNGGTESRVKDEGEDK 180

Query: 183 ANRFLP 189
            NRFLP
Sbjct: 181 RNRFLP 186

[Close]

BLAST of MS021772 vs. NCBI nr
Match: XP_022941514.1 (RING-H2 finger protein ATL80-like [Cucurbita moschata])

HSP 1 Score: 347.4 bits (890), Expect = 7.5e-92
Identity = 167/186 (89.78%), Postives = 174/186 (93.55%), Query Frame = 0


Query: 3   MRPFRYLAGDNSSATSDSAEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLTGD 62
           MR FRYLA  NSS+ SD+ EPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHL GD
Sbjct: 1   MRSFRYLADANSSSISDTVEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD 60

Query: 63  GGGTSSTRPPPPPASNKGLKKKILRSLPKHTFTAEFAGQFSDCAICLAEFAVGDEIRVLP 122
           GGG +STRPPPPPASNKGLKKKILRSLPK+TFTAEFA QFSDCAICLAEF VGDEIRVLP
Sbjct: 61  GGGAASTRPPPPPASNKGLKKKILRSLPKYTFTAEFAAQFSDCAICLAEFVVGDEIRVLP 120

Query: 123 QCGHGFHVACIDTWFRSHSSCPSCRQILVVNQCQKCGGFPASSSSNAGTESRVKEGGEDK 182
           QCGHGFHV+CIDTWFRSHSSCPSCRQILVV+QCQKCGGFPASSSSN GTESRVK+ GEDK
Sbjct: 121 QCGHGFHVSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKDEGEDK 180

Query: 183 ANRFLP 189
            NRFLP
Sbjct: 181 RNRFLP 186

[Close]

BLAST of MS021772 vs. NCBI nr
Match: XP_023523429.1 (RING-H2 finger protein ATL8-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 347.4 bits (890), Expect = 7.5e-92
Identity = 167/186 (89.78%), Postives = 174/186 (93.55%), Query Frame = 0


Query: 3   MRPFRYLAGDNSSATSDSAEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLTGD 62
           MRPFRYLA  NSS+ SD+ EPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHL GD
Sbjct: 1   MRPFRYLADANSSSISDTVEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD 60

Query: 63  GGGTSSTRPPPPPASNKGLKKKILRSLPKHTFTAEFAGQFSDCAICLAEFAVGDEIRVLP 122
            GG +STRPPPPPASNKGLKKKILRSLPK+TFTAEFA QFSDCAICLAEF VGDEIRVLP
Sbjct: 61  RGGAASTRPPPPPASNKGLKKKILRSLPKYTFTAEFAAQFSDCAICLAEFVVGDEIRVLP 120

Query: 123 QCGHGFHVACIDTWFRSHSSCPSCRQILVVNQCQKCGGFPASSSSNAGTESRVKEGGEDK 182
           QCGHGFHV+CIDTWFRSHSSCPSCRQILVV+QCQKCGGFPASSSSN GTESRVK+ GEDK
Sbjct: 121 QCGHGFHVSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKDEGEDK 180

Query: 183 ANRFLP 189
            NRFLP
Sbjct: 181 RNRFLP 186

[Close]

BLAST of MS021772 vs. NCBI nr
Match: XP_008453009.1 (PREDICTED: RING-H2 finger protein ATL80 [Cucumis melo] >KAA0064659.1 RING-H2 finger protein ATL80 [Cucumis melo var. makuwa] >TYK19932.1 RING-H2 finger protein ATL80 [Cucumis melo var. makuwa])

HSP 1 Score: 347.1 bits (889), Expect = 9.8e-92
Identity = 169/186 (90.86%), Postives = 175/186 (94.09%), Query Frame = 0


Query: 3   MRPFRYLAGDNSSATSDSAEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLTGD 62
           MRPFRYLAG NSSATSD+ EP RYDSDFVIILAALLCALICVLGLVAVARCAWLRHL GD
Sbjct: 1   MRPFRYLAGVNSSATSDTFEP-RYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD 60

Query: 63  GGGTSSTRPPPPPASNKGLKKKILRSLPKHTFTAEFAGQFSDCAICLAEFAVGDEIRVLP 122
           G G  STRPPPPPASNKGLKKKILRSLPK+TFTAEF+ QFSDCAICLAEFAVGDEIRVLP
Sbjct: 61  GAGAGSTRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLP 120

Query: 123 QCGHGFHVACIDTWFRSHSSCPSCRQILVVNQCQKCGGFPASSSSNAGTESRVKEGGEDK 182
           QCGHGFHV+CIDTWFRSHSSCPSCRQILVV+QCQKCGGFPASSSSN GTESRVKE G+DK
Sbjct: 121 QCGHGFHVSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDK 180

Query: 183 ANRFLP 189
            NRFLP
Sbjct: 181 TNRFLP 185

[Close]

BLAST of MS021772 vs. ExPASy Swiss-Prot
Match: Q9LM69 (RING-H2 finger protein ATL80 OS=Arabidopsis thaliana OX=3702 GN=ATL80 PE=2 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 4.5e-55
Identity = 111/192 (57.81%), Postives = 135/192 (70.31%), Query Frame = 0


Query: 6   FRYLAGDNSSATSDSAEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLTGD--- 65
           FR L   N+ + +        +SD V+ILAALLCALICVLGL+AV+RC WLR L      
Sbjct: 6   FRLLVESNTPSPAIDNSTAALNSDLVVILAALLCALICVLGLIAVSRCVWLRRLAAGNRT 65

Query: 66  -GGGTSSTRPPPPPASNKGLKKKILRSLPKHTFTAEF--AGQFSDCAICLAEFAVGDEIR 125
             G  + +  PP  A+NKGLKKK+L+SLPK TF+ E   + +F++CAICLAEF+ GDE+R
Sbjct: 66  VSGSQTQSPQPPVAAANKGLKKKVLQSLPKLTFSPESPESEKFAECAICLAEFSAGDELR 125

Query: 126 VLPQCGHGFHVACIDTWFRSHSSCPSCRQILVVNQCQKCGGFPASSSSNAGTESRVK--- 185
           VLPQCGHGFHVACIDTW  SHSSCPSCRQILVV +C KCGG P SSSS   +E  ++   
Sbjct: 126 VLPQCGHGFHVACIDTWLGSHSSCPSCRQILVVARCHKCGGLPGSSSSGLESEPEIEIRI 185

Query: 186 EGGEDKANRFLP 189
           + GED  N FLP
Sbjct: 186 KQGEDDPNSFLP 197

[Close]

BLAST of MS021772 vs. ExPASy Swiss-Prot
Match: Q8LC69 (RING-H2 finger protein ATL8 OS=Arabidopsis thaliana OX=3702 GN=ATL8 PE=2 SV=2)

HSP 1 Score: 210.3 bits (534), Expect = 1.9e-53
Identity = 102/174 (58.62%), Postives = 131/174 (75.29%), Query Frame = 0


Query: 6   FRYLAGDNSSATSDSAEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLTGDGGG 65
           FR L   NS++ ++++ P  ++SD V+ILA LLCAL C++GL+AV+RCAWLR +      
Sbjct: 6   FRLLQEANSTSPAEASPP--FNSDLVLILAVLLCALTCIIGLIAVSRCAWLRRI-ASRNR 65

Query: 66  TSSTRPPPPPASNKGLKKKILRSLPKHTFTAEF--AGQFSDCAICLAEFAVGDEIRVLPQ 125
           +  T PPP  A+NKGLKKK+LRSLPK T++ +   A +  +CAICL EFA GDE+RVLPQ
Sbjct: 66  SDQTHPPPVAAANKGLKKKVLRSLPKLTYSPDSPPAEKLVECAICLTEFAAGDELRVLPQ 125

Query: 126 CGHGFHVACIDTWFRSHSSCPSCRQILVVNQCQKCGGFPASSSSNAGTESRVKE 178
           CGHGFHV+CIDTW  SHSSCPSCRQILVV +C KCGG P SSSS    ++R+K+
Sbjct: 126 CGHGFHVSCIDTWLGSHSSCPSCRQILVVTRCHKCGGLPGSSSSGPEPDTRIKQ 176

[Close]

BLAST of MS021772 vs. ExPASy Swiss-Prot
Match: Q9ZT49 (Probable E3 ubiquitin-protein ligase ATL45 OS=Arabidopsis thaliana OX=3702 GN=ATL45 PE=1 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.1e-37
Identity = 79/149 (53.02%), Postives = 97/149 (65.10%), Query Frame = 0


Query: 27  DSDFVIILAALLCALICVLGLVAVARCAWLRHLTGDGGGTSSTRPPPPPASNKGLKKKIL 86
           ++D V+IL+ALLCAL+CV GL AVARCAWLR LTG         PPP    NKGLKKK L
Sbjct: 23  ETDMVVILSALLCALVCVAGLAAVARCAWLRRLTGVNPAAVGEAPPP----NKGLKKKAL 82

Query: 87  RSLPKHTFTAEFA----------------GQFSDCAICLAEFAVGDEIRVLPQCGHGFHV 146
           ++LPK T+TA  +                   ++CAIC+ EF+ G+EIR+LP C H FHV
Sbjct: 83  QALPKSTYTASASTAAAADDLPCSSVGDGDSSTECAICITEFSEGEEIRILPLCSHAFHV 142

Query: 147 ACIDTWFRSHSSCPSCRQILVVNQCQKCG 160
           ACID W  S SSCPSCR+ILV  +C +CG
Sbjct: 143 ACIDKWLTSRSSCPSCRRILVPVKCDRCG 167

[Close]

BLAST of MS021772 vs. ExPASy Swiss-Prot
Match: O22755 (Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana OX=3702 GN=ATL44 PE=1 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.9e-37
Identity = 82/141 (58.16%), Postives = 96/141 (68.09%), Query Frame = 0


Query: 27  DSDFVIILAALLCALICVLGLVAVARCAWLRHLTGDGGGTSSTRPPPPPASNKGLKKKIL 86
           +SD V+IL+ALLCALICV GL AV RCAWLR  T   GG S       P+ NKGLKKK L
Sbjct: 25  ESDMVVILSALLCALICVAGLAAVVRCAWLRRFT--AGGDS-------PSPNKGLKKKAL 84

Query: 87  RSLPKHTFTAEFA--------GQFSDCAICLAEFAVGDEIRVLPQCGHGFHVACIDTWFR 146
           +SLP+ TFTA  +        G  ++CAICL +FA G+EIRVLP CGH FHV CID W  
Sbjct: 85  QSLPRSTFTAAESTSGAAAEEGDSTECAICLTDFADGEEIRVLPLCGHSFHVECIDKWLV 144

Query: 147 SHSSCPSCRQILVVNQCQKCG 160
           S SSCPSCR+IL   +C +CG
Sbjct: 145 SRSSCPSCRRILTPVRCDRCG 156

[Close]

BLAST of MS021772 vs. ExPASy Swiss-Prot
Match: Q9FLC6 (RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 5.7e-26
Identity = 66/145 (45.52%), Postives = 90/145 (62.07%), Query Frame = 0


Query: 11  GDNSSATSDSAEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLTGDGGGTSSTR 70
           GD+ S   + A     D+  VIILAALLCALIC LG+ +V RC     L      T +  
Sbjct: 25  GDSVSNNKNIAS---MDTHMVIILAALLCALICALGINSVLRCV----LRCTRRFTPNED 84

Query: 71  PPPPPAS-NKGLKKKILRSLPKHTFTAEFAGQFSDCAICLAEFAVGDEIRVLPQCGHGFH 130
           P    A+  KG+KK+ L+ +P  +++ E   + ++C ICL +F  G+ +RVLP+C HGFH
Sbjct: 85  PVDTNANVAKGIKKRALKVIPVDSYSPELKMKATECLICLGDFVEGETVRVLPKCNHGFH 144

Query: 131 VACIDTWFRSHSSCPSCRQILVVNQ 155
           V CIDTW  SHSSCP+CRQ L+ +Q
Sbjct: 145 VKCIDTWLLSHSSCPTCRQSLLEHQ 162

[Close]

BLAST of MS021772 vs. ExPASy TrEMBL
Match: A0A0A0L5Y2 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G664340 PE=4 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 2.1e-92
Identity = 169/186 (90.86%), Postives = 176/186 (94.62%), Query Frame = 0


Query: 3   MRPFRYLAGDNSSATSDSAEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLTGD 62
           MRPFRYLAG NSSATSD+ EP RYDSDFVIILAALLCALICVLGLVAVARCAWLRHL GD
Sbjct: 1   MRPFRYLAGVNSSATSDTFEP-RYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD 60

Query: 63  GGGTSSTRPPPPPASNKGLKKKILRSLPKHTFTAEFAGQFSDCAICLAEFAVGDEIRVLP 122
           GGG  STRPPPPPASNKGLKKKILRSLPK+TFTAEF+ QFSDCAICLAEFAVGDEIRVLP
Sbjct: 61  GGGAGSTRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLP 120

Query: 123 QCGHGFHVACIDTWFRSHSSCPSCRQILVVNQCQKCGGFPASSSSNAGTESRVKEGGEDK 182
           QCGHGFH++CIDTWFRSHSSCPSCRQILVV+QCQKCGGFPASSSSN GTESRVKE G+DK
Sbjct: 121 QCGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDK 180

Query: 183 ANRFLP 189
            NRFLP
Sbjct: 181 TNRFLP 185

[Close]

BLAST of MS021772 vs. ExPASy TrEMBL
Match: A0A6J1FNK0 (RING-H2 finger protein ATL80-like OS=Cucurbita moschata OX=3662 GN=LOC111446793 PE=4 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 3.6e-92
Identity = 167/186 (89.78%), Postives = 174/186 (93.55%), Query Frame = 0


Query: 3   MRPFRYLAGDNSSATSDSAEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLTGD 62
           MR FRYLA  NSS+ SD+ EPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHL GD
Sbjct: 1   MRSFRYLADANSSSISDTVEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD 60

Query: 63  GGGTSSTRPPPPPASNKGLKKKILRSLPKHTFTAEFAGQFSDCAICLAEFAVGDEIRVLP 122
           GGG +STRPPPPPASNKGLKKKILRSLPK+TFTAEFA QFSDCAICLAEF VGDEIRVLP
Sbjct: 61  GGGAASTRPPPPPASNKGLKKKILRSLPKYTFTAEFAAQFSDCAICLAEFVVGDEIRVLP 120

Query: 123 QCGHGFHVACIDTWFRSHSSCPSCRQILVVNQCQKCGGFPASSSSNAGTESRVKEGGEDK 182
           QCGHGFHV+CIDTWFRSHSSCPSCRQILVV+QCQKCGGFPASSSSN GTESRVK+ GEDK
Sbjct: 121 QCGHGFHVSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKDEGEDK 180

Query: 183 ANRFLP 189
            NRFLP
Sbjct: 181 RNRFLP 186

[Close]

BLAST of MS021772 vs. ExPASy TrEMBL
Match: A0A5A7VGL3 (RING-H2 finger protein ATL80 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00440 PE=4 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 4.8e-92
Identity = 169/186 (90.86%), Postives = 175/186 (94.09%), Query Frame = 0


Query: 3   MRPFRYLAGDNSSATSDSAEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLTGD 62
           MRPFRYLAG NSSATSD+ EP RYDSDFVIILAALLCALICVLGLVAVARCAWLRHL GD
Sbjct: 1   MRPFRYLAGVNSSATSDTFEP-RYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD 60

Query: 63  GGGTSSTRPPPPPASNKGLKKKILRSLPKHTFTAEFAGQFSDCAICLAEFAVGDEIRVLP 122
           G G  STRPPPPPASNKGLKKKILRSLPK+TFTAEF+ QFSDCAICLAEFAVGDEIRVLP
Sbjct: 61  GAGAGSTRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLP 120

Query: 123 QCGHGFHVACIDTWFRSHSSCPSCRQILVVNQCQKCGGFPASSSSNAGTESRVKEGGEDK 182
           QCGHGFHV+CIDTWFRSHSSCPSCRQILVV+QCQKCGGFPASSSSN GTESRVKE G+DK
Sbjct: 121 QCGHGFHVSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDK 180

Query: 183 ANRFLP 189
            NRFLP
Sbjct: 181 TNRFLP 185

[Close]

BLAST of MS021772 vs. ExPASy TrEMBL
Match: A0A6J1IVW2 (RING-H2 finger protein ATL80 OS=Cucurbita maxima OX=3661 GN=LOC111481072 PE=4 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 4.8e-92
Identity = 168/186 (90.32%), Postives = 175/186 (94.09%), Query Frame = 0


Query: 3   MRPFRYLAGDNSSATSDSAEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLTGD 62
           MRPFRYLA  NSS+ SD+ EPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHL GD
Sbjct: 1   MRPFRYLADANSSSISDTVEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD 60

Query: 63  GGGTSSTRPPPPPASNKGLKKKILRSLPKHTFTAEFAGQFSDCAICLAEFAVGDEIRVLP 122
           GGG +STRPPPPPASNKGLKKKILRSLPK+TFTAEFA QFSDCAICLAEF VGDEIRVLP
Sbjct: 61  GGGAASTRPPPPPASNKGLKKKILRSLPKYTFTAEFAAQFSDCAICLAEFVVGDEIRVLP 120

Query: 123 QCGHGFHVACIDTWFRSHSSCPSCRQILVVNQCQKCGGFPASSSSNAGTESRVKEGGEDK 182
           QCGHGFHV+CIDTWFRSHSSCPSCRQILVV+QCQKCGGFPASSSSN GTESRVK+ GEDK
Sbjct: 121 QCGHGFHVSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKD-GEDK 180

Query: 183 ANRFLP 189
            NRFLP
Sbjct: 181 RNRFLP 185

[Close]

BLAST of MS021772 vs. ExPASy TrEMBL
Match: A0A1S3BWC1 (RING-H2 finger protein ATL80 OS=Cucumis melo OX=3656 GN=LOC103493842 PE=4 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 4.8e-92
Identity = 169/186 (90.86%), Postives = 175/186 (94.09%), Query Frame = 0


Query: 3   MRPFRYLAGDNSSATSDSAEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLTGD 62
           MRPFRYLAG NSSATSD+ EP RYDSDFVIILAALLCALICVLGLVAVARCAWLRHL GD
Sbjct: 1   MRPFRYLAGVNSSATSDTFEP-RYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD 60

Query: 63  GGGTSSTRPPPPPASNKGLKKKILRSLPKHTFTAEFAGQFSDCAICLAEFAVGDEIRVLP 122
           G G  STRPPPPPASNKGLKKKILRSLPK+TFTAEF+ QFSDCAICLAEFAVGDEIRVLP
Sbjct: 61  GAGAGSTRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLP 120

Query: 123 QCGHGFHVACIDTWFRSHSSCPSCRQILVVNQCQKCGGFPASSSSNAGTESRVKEGGEDK 182
           QCGHGFHV+CIDTWFRSHSSCPSCRQILVV+QCQKCGGFPASSSSN GTESRVKE G+DK
Sbjct: 121 QCGHGFHVSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDK 180

Query: 183 ANRFLP 189
            NRFLP
Sbjct: 181 TNRFLP 185

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BLAST of MS021772 vs. TAIR 10
Match: AT1G20823.1 (RING/U-box superfamily protein )

HSP 1 Score: 215.7 bits (548), Expect = 3.2e-56
Identity = 111/192 (57.81%), Postives = 135/192 (70.31%), Query Frame = 0


Query: 6   FRYLAGDNSSATSDSAEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLTGD--- 65
           FR L   N+ + +        +SD V+ILAALLCALICVLGL+AV+RC WLR L      
Sbjct: 6   FRLLVESNTPSPAIDNSTAALNSDLVVILAALLCALICVLGLIAVSRCVWLRRLAAGNRT 65

Query: 66  -GGGTSSTRPPPPPASNKGLKKKILRSLPKHTFTAEF--AGQFSDCAICLAEFAVGDEIR 125
             G  + +  PP  A+NKGLKKK+L+SLPK TF+ E   + +F++CAICLAEF+ GDE+R
Sbjct: 66  VSGSQTQSPQPPVAAANKGLKKKVLQSLPKLTFSPESPESEKFAECAICLAEFSAGDELR 125

Query: 126 VLPQCGHGFHVACIDTWFRSHSSCPSCRQILVVNQCQKCGGFPASSSSNAGTESRVK--- 185
           VLPQCGHGFHVACIDTW  SHSSCPSCRQILVV +C KCGG P SSSS   +E  ++   
Sbjct: 126 VLPQCGHGFHVACIDTWLGSHSSCPSCRQILVVARCHKCGGLPGSSSSGLESEPEIEIRI 185

Query: 186 EGGEDKANRFLP 189
           + GED  N FLP
Sbjct: 186 KQGEDDPNSFLP 197

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BLAST of MS021772 vs. TAIR 10
Match: AT1G76410.1 (RING/U-box superfamily protein )

HSP 1 Score: 210.3 bits (534), Expect = 1.3e-54
Identity = 102/174 (58.62%), Postives = 131/174 (75.29%), Query Frame = 0


Query: 6   FRYLAGDNSSATSDSAEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLTGDGGG 65
           FR L   NS++ ++++ P  ++SD V+ILA LLCAL C++GL+AV+RCAWLR +      
Sbjct: 6   FRLLQEANSTSPAEASPP--FNSDLVLILAVLLCALTCIIGLIAVSRCAWLRRI-ASRNR 65

Query: 66  TSSTRPPPPPASNKGLKKKILRSLPKHTFTAEF--AGQFSDCAICLAEFAVGDEIRVLPQ 125
           +  T PPP  A+NKGLKKK+LRSLPK T++ +   A +  +CAICL EFA GDE+RVLPQ
Sbjct: 66  SDQTHPPPVAAANKGLKKKVLRSLPKLTYSPDSPPAEKLVECAICLTEFAAGDELRVLPQ 125

Query: 126 CGHGFHVACIDTWFRSHSSCPSCRQILVVNQCQKCGGFPASSSSNAGTESRVKE 178
           CGHGFHV+CIDTW  SHSSCPSCRQILVV +C KCGG P SSSS    ++R+K+
Sbjct: 126 CGHGFHVSCIDTWLGSHSSCPSCRQILVVTRCHKCGGLPGSSSSGPEPDTRIKQ 176

[Close]

BLAST of MS021772 vs. TAIR 10
Match: AT4G35480.1 (RING-H2 finger A3B )

HSP 1 Score: 157.9 bits (398), Expect = 7.9e-39
Identity = 79/149 (53.02%), Postives = 97/149 (65.10%), Query Frame = 0


Query: 27  DSDFVIILAALLCALICVLGLVAVARCAWLRHLTGDGGGTSSTRPPPPPASNKGLKKKIL 86
           ++D V+IL+ALLCAL+CV GL AVARCAWLR LTG         PPP    NKGLKKK L
Sbjct: 23  ETDMVVILSALLCALVCVAGLAAVARCAWLRRLTGVNPAAVGEAPPP----NKGLKKKAL 82

Query: 87  RSLPKHTFTAEFA----------------GQFSDCAICLAEFAVGDEIRVLPQCGHGFHV 146
           ++LPK T+TA  +                   ++CAIC+ EF+ G+EIR+LP C H FHV
Sbjct: 83  QALPKSTYTASASTAAAADDLPCSSVGDGDSSTECAICITEFSEGEEIRILPLCSHAFHV 142

Query: 147 ACIDTWFRSHSSCPSCRQILVVNQCQKCG 160
           ACID W  S SSCPSCR+ILV  +C +CG
Sbjct: 143 ACIDKWLTSRSSCPSCRRILVPVKCDRCG 167

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BLAST of MS021772 vs. TAIR 10
Match: AT2G17450.1 (RING-H2 finger A3A )

HSP 1 Score: 157.1 bits (396), Expect = 1.3e-38
Identity = 82/141 (58.16%), Postives = 96/141 (68.09%), Query Frame = 0


Query: 27  DSDFVIILAALLCALICVLGLVAVARCAWLRHLTGDGGGTSSTRPPPPPASNKGLKKKIL 86
           +SD V+IL+ALLCALICV GL AV RCAWLR  T   GG S       P+ NKGLKKK L
Sbjct: 25  ESDMVVILSALLCALICVAGLAAVVRCAWLRRFT--AGGDS-------PSPNKGLKKKAL 84

Query: 87  RSLPKHTFTAEFA--------GQFSDCAICLAEFAVGDEIRVLPQCGHGFHVACIDTWFR 146
           +SLP+ TFTA  +        G  ++CAICL +FA G+EIRVLP CGH FHV CID W  
Sbjct: 85  QSLPRSTFTAAESTSGAAAEEGDSTECAICLTDFADGEEIRVLPLCGHSFHVECIDKWLV 144

Query: 147 SHSSCPSCRQILVVNQCQKCG 160
           S SSCPSCR+IL   +C +CG
Sbjct: 145 SRSSCPSCRRILTPVRCDRCG 156

[Close]

BLAST of MS021772 vs. TAIR 10
Match: AT5G05280.1 (RING/U-box superfamily protein )

HSP 1 Score: 119.0 bits (297), Expect = 4.1e-27
Identity = 66/145 (45.52%), Postives = 90/145 (62.07%), Query Frame = 0


Query: 11  GDNSSATSDSAEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLTGDGGGTSSTR 70
           GD+ S   + A     D+  VIILAALLCALIC LG+ +V RC     L      T +  
Sbjct: 25  GDSVSNNKNIAS---MDTHMVIILAALLCALICALGINSVLRCV----LRCTRRFTPNED 84

Query: 71  PPPPPAS-NKGLKKKILRSLPKHTFTAEFAGQFSDCAICLAEFAVGDEIRVLPQCGHGFH 130
           P    A+  KG+KK+ L+ +P  +++ E   + ++C ICL +F  G+ +RVLP+C HGFH
Sbjct: 85  PVDTNANVAKGIKKRALKVIPVDSYSPELKMKATECLICLGDFVEGETVRVLPKCNHGFH 144

Query: 131 VACIDTWFRSHSSCPSCRQILVVNQ 155
           V CIDTW  SHSSCP+CRQ L+ +Q
Sbjct: 145 VKCIDTWLLSHSSCPTCRQSLLEHQ 162

The following BLAST results are available for this feature:

BLAST of MS021772 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145558.1	4.4e-92	90.86	RING-H2 finger protein ATL8 [Cucumis sativus] >KGN55526.1 hypothetical protein C...	[more]
KAG6608649.1	5.8e-92	89.78	RING-H2 finger protein ATL80, partial [Cucurbita argyrosperma subsp. sororia] >K...	[more]
XP_022941514.1	7.5e-92	89.78	RING-H2 finger protein ATL80-like [Cucurbita moschata]	[more]
XP_023523429.1	7.5e-92	89.78	RING-H2 finger protein ATL8-like [Cucurbita pepo subsp. pepo]	[more]
XP_008453009.1	9.8e-92	90.86	PREDICTED: RING-H2 finger protein ATL80 [Cucumis melo] >KAA0064659.1 RING-H2 fin...	[more]

BLAST of MS021772 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LM69	4.5e-55	57.81	RING-H2 finger protein ATL80 OS=Arabidopsis thaliana OX=3702 GN=ATL80 PE=2 SV=1	[more]
Q8LC69	1.9e-53	58.62	RING-H2 finger protein ATL8 OS=Arabidopsis thaliana OX=3702 GN=ATL8 PE=2 SV=2	[more]
Q9ZT49	1.1e-37	53.02	Probable E3 ubiquitin-protein ligase ATL45 OS=Arabidopsis thaliana OX=3702 GN=AT...	[more]
O22755	1.9e-37	58.16	Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana OX=3702 GN=AT...	[more]
Q9FLC6	5.7e-26	45.52	RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1	[more]

BLAST of MS021772 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5Y2	2.1e-92	90.86	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G664340 P...	[more]
A0A6J1FNK0	3.6e-92	89.78	RING-H2 finger protein ATL80-like OS=Cucurbita moschata OX=3662 GN=LOC111446793 ...	[more]
A0A5A7VGL3	4.8e-92	90.86	RING-H2 finger protein ATL80 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A6J1IVW2	4.8e-92	90.32	RING-H2 finger protein ATL80 OS=Cucurbita maxima OX=3661 GN=LOC111481072 PE=4 SV...	[more]
A0A1S3BWC1	4.8e-92	90.86	RING-H2 finger protein ATL80 OS=Cucumis melo OX=3656 GN=LOC103493842 PE=4 SV=1	[more]

BLAST of MS021772 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G20823.1	3.2e-56	57.81	RING/U-box superfamily protein	[more]
AT1G76410.1	1.3e-54	58.62	RING/U-box superfamily protein	[more]
AT4G35480.1	7.9e-39	53.02	RING-H2 finger A3B	[more]
AT2G17450.1	1.3e-38	58.16	RING-H2 finger A3A	[more]
AT5G05280.1	4.1e-27	45.52	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 105..146 e-value: 8.0E-8 score: 42.0
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 104..147 e-value: 3.9E-14 score: 52.7
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 105..147 score: 12.415513
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 73..151 e-value: 1.5E-21 score: 77.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 174..188
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 162..188
None	No IPR available	PANTHER	PTHR45798	RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED	coord: 3..181
None	No IPR available	PANTHER	PTHR45798:SF59	RING-H2 FINGER PROTEIN ATL8	coord: 3..181
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 104..147 e-value: 1.68497E-17 score: 70.4085
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 86..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS021772.1	MS021772.1	mRNA