MS021291 (gene) Bitter gourd (TR) v1

Overview
NameMS021291
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLOW QUALITY PROTEIN: uncharacterized protein LOC103503106
Locationscaffold358: 777230 .. 777361 (+)
RNA-Seq ExpressionMS021291
SyntenyMS021291
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTTCTTGTTCCAATGCCCTTGTTGTTCTTGTTTCTGCTTCATGAAGCCCAAAAATGGCAAACCAAAGGCTCAAGAAAAACCCAAGGAAGCTCCACCACCACCACCAACCAAGGAAGAGAAGAAAGAA

mRNA sequence

ATGAAGTTCTTGTTCCAATGCCCTTGTTGTTCTTGTTTCTGCTTCATGAAGCCCAAAAATGGCAAACCAAAGGCTCAAGAAAAACCCAAGGAAGCTCCACCACCACCACCAACCAAGGAAGAGAAGAAAGAA

Coding sequence (CDS)

ATGAAGTTCTTGTTCCAATGCCCTTGTTGTTCTTGTTTCTGCTTCATGAAGCCCAAAAATGGCAAACCAAAGGCTCAAGAAAAACCCAAGGAAGCTCCACCACCACCACCAACCAAGGAAGAGAAGAAAGAA

Protein sequence

MKFLFQCPCCSCFCFMKPKNGKPKAQEKPKEAPPPPPTKEEKKE
Homology
BLAST of MS021291 vs. NCBI nr
Match: XP_011654067.1 (uncharacterized protein LOC105435295 [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 1.7e-07
Identity = 36/53 (67.92%), Postives = 37/53 (69.81%), Query Frame = 0

Query: 1  MKFLFQCPCCSCFCFMKPKNGKPKA---------QEKPKEAPPPPPTKEEKKE 45
          MKFLFQCPCCSCFCFMKPK GKPKA         +E  KE  P PP KEEKKE
Sbjct: 1  MKFLFQCPCCSCFCFMKPKQGKPKAAQDHQNQPKKEAKKEDKPAPPPKEEKKE 53

BLAST of MS021291 vs. NCBI nr
Match: XP_038897115.1 (uncharacterized protein LOC120085277 [Benincasa hispida])

HSP 1 Score: 64.7 bits (156), Expect = 2.3e-07
Identity = 36/50 (72.00%), Postives = 36/50 (72.00%), Query Frame = 0

Query: 1  MKFLFQCPCCSCFCFMKPKNGKPKAQ------EKPKEAPPPPPTKEEKKE 45
          MKFLFQCPCCSCFCFMKPK GKPKAQ      E  KE  P  P KEEKKE
Sbjct: 1  MKFLFQCPCCSCFCFMKPKQGKPKAQDNQPKKEAKKEDQPQAPPKEEKKE 50

BLAST of MS021291 vs. NCBI nr
Match: KAF5178591.1 (hypothetical protein FRX31_031822 [Thalictrum thalictroides])

HSP 1 Score: 64.3 bits (155), Expect = 3.0e-07
Identity = 27/31 (87.10%), Postives = 29/31 (93.55%), Query Frame = 0

Query: 1  MKFLFQCPCCSCFCFMKPKNGKPKAQEKPKE 32
          MKFLFQCPCC+CFCFMKPK GKPKA+E PKE
Sbjct: 1  MKFLFQCPCCACFCFMKPKTGKPKAKETPKE 31

BLAST of MS021291 vs. NCBI nr
Match: KAG9129089.1 (hypothetical protein Leryth_019826 [Lithospermum erythrorhizon])

HSP 1 Score: 62.4 bits (150), Expect = 1.1e-06
Identity = 31/44 (70.45%), Postives = 36/44 (81.82%), Query Frame = 0

Query: 1  MKFLFQCPCCSCFCFMKPKNGKPKAQEKPKEAPPPPPTKEEKKE 45
          MKFLFQCPCCSCFCFMKPK GKP+  EK   APPPPP  ++K++
Sbjct: 1  MKFLFQCPCCSCFCFMKPKQGKPR--EKKAGAPPPPPDDQKKEK 42

BLAST of MS021291 vs. NCBI nr
Match: XP_021682431.1 (uncharacterized protein LOC110666297 [Hevea brasiliensis])

HSP 1 Score: 62.0 bits (149), Expect = 1.5e-06
Identity = 32/44 (72.73%), Postives = 34/44 (77.27%), Query Frame = 0

Query: 1  MKFLFQCPCCSCFCFMKPKNGKPKAQEKPKEAPPPPPTKEEKKE 45
          MKFLFQCPCCSCFCFMKPK GKPKA+E   E      +KEEKKE
Sbjct: 1  MKFLFQCPCCSCFCFMKPKQGKPKAKEAKVEG-----SKEEKKE 39

BLAST of MS021291 vs. ExPASy TrEMBL
Match: A0A2G5CWE6 (Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_03600115v1 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.1e-06
Identity = 32/45 (71.11%), Postives = 34/45 (75.56%), Query Frame = 0

Query: 1  MKFLFQCPCCSCFCFMKPKNGKPKAQEKPKEAP-PPPPTKEEKKE 45
          MKFLFQCPCC+CFCFMKPK GKPKA+E PKE    P   KE  KE
Sbjct: 1  MKFLFQCPCCACFCFMKPKTGKPKAKETPKEVKVTPKEVKETPKE 45

BLAST of MS021291 vs. ExPASy TrEMBL
Match: A0A2C9UE71 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G088200 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.1e-06
Identity = 32/44 (72.73%), Postives = 34/44 (77.27%), Query Frame = 0

Query: 1  MKFLFQCPCCSCFCFMKPKNGKPKAQEKPKEAPPPPPTKEEKKE 45
          MKFLFQCPCCSCFCFMKPK GKPKA+E   E      +KEEKKE
Sbjct: 1  MKFLFQCPCCSCFCFMKPKQGKPKAKEAKVE-----DSKEEKKE 39

BLAST of MS021291 vs. ExPASy TrEMBL
Match: A0A1S4E585 (LOW QUALITY PROTEIN: uncharacterized protein LOC103503106 OS=Cucumis melo OX=3656 GN=LOC103503106 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.1e-06
Identity = 36/55 (65.45%), Postives = 39/55 (70.91%), Query Frame = 0

Query: 1  MKFLFQCPCCSCF-CFMKPKNGKPKA----QEKPK------EAPPPPPTKEEKKE 45
          MKFLFQCPCCSCF CFMKPK GKPKA    Q +PK      + P PPP KE+KKE
Sbjct: 1  MKFLFQCPCCSCFXCFMKPKQGKPKAAQDHQNQPKKEAKKEDQPAPPPPKEDKKE 55

BLAST of MS021291 vs. ExPASy TrEMBL
Match: A0A398ACC4 (Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRAA02T06139Z PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.7e-06
Identity = 33/45 (73.33%), Postives = 33/45 (73.33%), Query Frame = 0

Query: 1  MKFLFQCPCCSCFCFMKPKNGKPKA-QEKPKEAPPPPPTKEEKKE 45
          MKFLFQCPCCSCFCFMKPK GKPKA   KPKE       K EKKE
Sbjct: 1  MKFLFQCPCCSCFCFMKPKQGKPKAVDSKPKEEKKKEEKKPEKKE 45

BLAST of MS021291 vs. ExPASy TrEMBL
Match: A0A3P6D1Q5 (Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLC2T07920H PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.7e-06
Identity = 33/45 (73.33%), Postives = 33/45 (73.33%), Query Frame = 0

Query: 1  MKFLFQCPCCSCFCFMKPKNGKPKA-QEKPKEAPPPPPTKEEKKE 45
          MKFLFQCPCCSCFCFMKPK GKPKA   KPKE       K EKKE
Sbjct: 1  MKFLFQCPCCSCFCFMKPKQGKPKAVDSKPKEEKKKEEKKPEKKE 45

BLAST of MS021291 vs. TAIR 10
Match: AT5G53880.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 58.5 bits (140), Expect = 1.5e-09
Identity = 34/51 (66.67%), Postives = 35/51 (68.63%), Query Frame = 0

Query: 1  MKFLFQCPCCSCFCFMKPKNGKPKA-------QEKPKEAPPPPPTKEEKKE 45
          MKFLFQCPCCSCFCFMKPK GKPKA       +EK KE       KEEKKE
Sbjct: 1  MKFLFQCPCCSCFCFMKPKPGKPKAVGDTKPKEEKKKEVKKEEIKKEEKKE 51

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_011654067.11.7e-0767.92uncharacterized protein LOC105435295 [Cucumis sativus][more]
XP_038897115.12.3e-0772.00uncharacterized protein LOC120085277 [Benincasa hispida][more]
KAF5178591.13.0e-0787.10hypothetical protein FRX31_031822 [Thalictrum thalictroides][more]
KAG9129089.11.1e-0670.45hypothetical protein Leryth_019826 [Lithospermum erythrorhizon][more]
XP_021682431.11.5e-0672.73uncharacterized protein LOC110666297 [Hevea brasiliensis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2G5CWE62.1e-0671.11Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_03600115v1 PE=4... [more]
A0A2C9UE712.1e-0672.73Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G088200 PE=4 SV=... [more]
A0A1S4E5852.1e-0665.45LOW QUALITY PROTEIN: uncharacterized protein LOC103503106 OS=Cucumis melo OX=365... [more]
A0A398ACC42.7e-0673.33Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRAA02T06139Z PE=4 SV=... [more]
A0A3P6D1Q52.7e-0673.33Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLC2T07920H PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G53880.11.5e-0966.67unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..44
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..44

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS021291.1MS021291.1mRNA