MS021289 (gene) Bitter gourd (TR) v1

Overview


Name	MS021289
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Squamosa promoter-binding protein
Location	scaffold358: 763899 .. 764590 (-)
RNA-Seq Expression	MS021289
Synteny	MS021289

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGACGAAGAGCTTCGAAGGCAGGCAGAGTTTTAAAGATAAGGTGTATAGGGAAGGCGTGGTCGATGATGATGTAGATTACGAGACGGAGGAGGAAGAGGTTGCCGGAGGAGGTCCTCATGGTTGCGCTGCATTGGGTTGTTCTGAGATTGAGAAAAAGAAAAGAGCTGCAGCAGTTCCAGGCCGTGGAAGGTCCGGTGGCGGCGTCTCTTCGCCAAGTTGCCAAGCACACAACTGTGCAGCAGATTTGACTGAAGCAAAGAGGTATCACCGCCGCCACAAGGTCTGCGAGTTTCACTCCAAGGCGGCGGTCGTCATGGTGGCCGGAATTCGCCAGCGTTTCTGTCAGCAATGCAGCAGGTATTTGATCCTCTTTTAACAATATAAGCAACAACACTTCTGTTAACATTCTTCCCCCTCTTCTGTTCGTCTATGGTAATATGTTTGTTGTTGGTGGTGATCAGGTTCCACGAGTTATCAGAATTTGATGAAGCTAAAAGGAGCTGTCGCAGGAGGCTGGCGGGGCACAACGAGCGTCGGCGGAAGAGCTCGGCCGAGGAAGGCACAGGGCGCAAAGGACCTGCCCCACAGTCGAAGGAAAGCCATTGCAGGCAGCTGGTGGAAGATCAAAGAGGCAGAATTCAGATGGCTCCTCCAGGGAGTTCTGGCTATAAACACCTGCATATCAGA

mRNA sequence

ATGGAGACGAAGAGCTTCGAAGGCAGGCAGAGTTTTAAAGATAAGGTGTATAGGGAAGGCGTGGTCGATGATGATGTAGATTACGAGACGGAGGAGGAAGAGGTTGCCGGAGGAGGTCCTCATGGTTGCGCTGCATTGGGTTGTTCTGAGATTGAGAAAAAGAAAAGAGCTGCAGCAGTTCCAGGCCGTGGAAGGTCCGGTGGCGGCGTCTCTTCGCCAAGTTGCCAAGCACACAACTGTGCAGCAGATTTGACTGAAGCAAAGAGGTATCACCGCCGCCACAAGGTCTGCGAGTTTCACTCCAAGGCGGCGGTCGTCATGGTGGCCGGAATTCGCCAGCGTTTCTGTCAGCAATGCAGCAGGTTCCACGAGTTATCAGAATTTGATGAAGCTAAAAGGAGCTGTCGCAGGAGGCTGGCGGGGCACAACGAGCGTCGGCGGAAGAGCTCGGCCGAGGAAGGCACAGGGCGCAAAGGACCTGCCCCACAGTCGAAGGAAAGCCATTGCAGGCAGCTGGTGGAAGATCAAAGAGGCAGAATTCAGATGGCTCCTCCAGGGAGTTCTGGCTATAAACACCTGCATATCAGA

Coding sequence (CDS)

ATGGAGACGAAGAGCTTCGAAGGCAGGCAGAGTTTTAAAGATAAGGTGTATAGGGAAGGCGTGGTCGATGATGATGTAGATTACGAGACGGAGGAGGAAGAGGTTGCCGGAGGAGGTCCTCATGGTTGCGCTGCATTGGGTTGTTCTGAGATTGAGAAAAAGAAAAGAGCTGCAGCAGTTCCAGGCCGTGGAAGGTCCGGTGGCGGCGTCTCTTCGCCAAGTTGCCAAGCACACAACTGTGCAGCAGATTTGACTGAAGCAAAGAGGTATCACCGCCGCCACAAGGTCTGCGAGTTTCACTCCAAGGCGGCGGTCGTCATGGTGGCCGGAATTCGCCAGCGTTTCTGTCAGCAATGCAGCAGGTTCCACGAGTTATCAGAATTTGATGAAGCTAAAAGGAGCTGTCGCAGGAGGCTGGCGGGGCACAACGAGCGTCGGCGGAAGAGCTCGGCCGAGGAAGGCACAGGGCGCAAAGGACCTGCCCCACAGTCGAAGGAAAGCCATTGCAGGCAGCTGGTGGAAGATCAAAGAGGCAGAATTCAGATGGCTCCTCCAGGGAGTTCTGGCTATAAACACCTGCATATCAGA

Protein sequence

METKSFEGRQSFKDKVYREGVVDDDVDYETEEEEVAGGGPHGCAALGCSEIEKKKRAAAVPGRGRSGGGVSSPSCQAHNCAADLTEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQQCSRFHELSEFDEAKRSCRRRLAGHNERRRKSSAEEGTGRKGPAPQSKESHCRQLVEDQRGRIQMAPPGSSGYKHLHIR

Homology

[Close]

BLAST of MS021289 vs. NCBI nr
Match: XP_022937043.1 (squamosa promoter-binding protein 1-like [Cucurbita moschata])

HSP 1 Score: 313.9 bits (803), Expect = 9.6e-82
Identity = 160/202 (79.21%), Postives = 172/202 (85.15%), Query Frame = 0


Query: 1   METKSFEGRQSFKDKVYREGVVDDDVDYETEEEEVAGGGPHG---CAALGCSEIEKKKRA 60
           ME KS+EG+ + KDK Y+EGV+DDD++YETEEE+V GGG  G   C ALG  E EKKKR 
Sbjct: 1   MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60

Query: 61  AAVPGRGRSGGGVSSPSCQAHNCAADLTEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120
            +V GRGRSG GVSSPSCQAHNC  DL+EAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ
Sbjct: 61  TSVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120

Query: 121 QCSRFHELSEFDEAKRSCRRRLAGHNERRRKSSAE---EGTGRKGPAPQSKESHCRQLVE 180
           QCSRFHEL+EFDEAKRSCRRRLAGHNERRRKSSAE   E T RKG A QSKE HCRQL+E
Sbjct: 121 QCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSASQSKEGHCRQLME 180

Query: 181 DQRGRIQMAPPGSSGYKHLHIR 197
           DQR RIQMAP GSSGYKHLHIR
Sbjct: 181 DQRSRIQMAPTGSSGYKHLHIR 202

[Close]

BLAST of MS021289 vs. NCBI nr
Match: XP_023536105.1 (squamosa promoter-binding protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 313.5 bits (802), Expect = 1.3e-81
Identity = 160/202 (79.21%), Postives = 171/202 (84.65%), Query Frame = 0


Query: 1   METKSFEGRQSFKDKVYREGVVDDDVDYETEEEEVAGGGPHG---CAALGCSEIEKKKRA 60
           ME KS+EG+ + KDK Y+EGV+DDD++YETEEE+V GGG  G   C ALG  E EKKKR 
Sbjct: 1   MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60

Query: 61  AAVPGRGRSGGGVSSPSCQAHNCAADLTEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120
            AV GRGRSG GVSSPSCQAHNC  DL+EAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ
Sbjct: 61  TAVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120

Query: 121 QCSRFHELSEFDEAKRSCRRRLAGHNERRRKSSAE---EGTGRKGPAPQSKESHCRQLVE 180
           QCSRFHEL+EFDEAKRSCRRRLAGHNERRRKSSAE   E T RKG   QSKE HCRQL+E
Sbjct: 121 QCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSVSQSKEGHCRQLME 180

Query: 181 DQRGRIQMAPPGSSGYKHLHIR 197
           DQR RIQMAP GSSGYKHLHIR
Sbjct: 181 DQRSRIQMAPTGSSGYKHLHIR 202

[Close]

BLAST of MS021289 vs. NCBI nr
Match: XP_022976580.1 (squamosa promoter-binding protein 1-like [Cucurbita maxima])

HSP 1 Score: 313.5 bits (802), Expect = 1.3e-81
Identity = 162/202 (80.20%), Postives = 172/202 (85.15%), Query Frame = 0


Query: 1   METKSFEGRQSFKDKVYREGVVDDDVDYETEEEEVAGGGPHG---CAALGCSEIEKKKRA 60
           ME KS+EG+ + KDK YREGVVDDD++YETEEE+V GGG  G   C ALG  E EKKKR 
Sbjct: 1   MEAKSYEGKHNLKDKAYREGVVDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60

Query: 61  AAVPGRGRSGGGVSSPSCQAHNCAADLTEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120
            AV GRGRSG GVSSPSCQAHNC  DL+EAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ
Sbjct: 61  TAVSGRGRSGVGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120

Query: 121 QCSRFHELSEFDEAKRSCRRRLAGHNERRRKSSAE---EGTGRKGPAPQSKESHCRQLVE 180
           QCSRFHEL+EFDEAKRSCRRRLAGHNERRRK+SAE   E T RKGPA QSKE  CRQL+E
Sbjct: 121 QCSRFHELTEFDEAKRSCRRRLAGHNERRRKNSAECQGESTNRKGPASQSKEGQCRQLME 180

Query: 181 DQRGRIQMAPPGSSGYKHLHIR 197
           DQR RIQMAP GSSGYKHLHIR
Sbjct: 181 DQRTRIQMAPTGSSGYKHLHIR 202

[Close]

BLAST of MS021289 vs. NCBI nr
Match: XP_038898687.1 (squamosa promoter-binding-like protein 3 [Benincasa hispida])

HSP 1 Score: 312.8 bits (800), Expect = 2.1e-81
Identity = 164/202 (81.19%), Postives = 173/202 (85.64%), Query Frame = 0


Query: 1   METKSFEGRQSFKDKVYREGVVDDDVDYETEEEEVAG---GGPHGCAALGCSEIEKKKRA 60
           ME KS EG+ +FKDK  REG+VDDD++YET EEEV G   GG + C ALG  E EKKKR 
Sbjct: 1   MEAKSIEGKHNFKDKTCREGMVDDDLEYET-EEEVGGAGHGGSNACTALGYFENEKKKRG 60

Query: 61  AAVPGRGRSGGGVSSPSCQAHNCAADLTEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120
           AAV GRGRSGG VSSPSCQAHNCA DL+EAKRYHRRHKVCE HSKAAVVMVAGIRQRFCQ
Sbjct: 61  AAVSGRGRSGGCVSSPSCQAHNCATDLSEAKRYHRRHKVCELHSKAAVVMVAGIRQRFCQ 120

Query: 121 QCSRFHELSEFDEAKRSCRRRLAGHNERRRKSSAE---EGTGRKGPAPQSKESHCRQLVE 180
           QCSRFHEL+EFDEAKRSCRRRLAGHNERRRKSSAE   E T RKG  PQSKESHCRQLVE
Sbjct: 121 QCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTSRKGSTPQSKESHCRQLVE 180

Query: 181 DQRGRIQMAPPGSSGYKHLHIR 197
           DQR RIQ+APPGSSGYKHLHIR
Sbjct: 181 DQRSRIQIAPPGSSGYKHLHIR 201

[Close]

BLAST of MS021289 vs. NCBI nr
Match: KAG7024822.1 (Squamosa promoter-binding-like protein 5, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 310.8 bits (795), Expect = 8.1e-81
Identity = 159/202 (78.71%), Postives = 171/202 (84.65%), Query Frame = 0


Query: 1   METKSFEGRQSFKDKVYREGVVDDDVDYETEEEEVAGGGPHG---CAALGCSEIEKKKRA 60
           ME KS+EG+ + KDK Y+EGV+DDD++YETEEE+V GGG  G   C ALG  E EKKKR 
Sbjct: 47  MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 106

Query: 61  AAVPGRGRSGGGVSSPSCQAHNCAADLTEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120
            AV GRGRSG GVSSPSCQAHNC  DL+EAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ
Sbjct: 107 TAVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 166

Query: 121 QCSRFHELSEFDEAKRSCRRRLAGHNERRRKSSAE---EGTGRKGPAPQSKESHCRQLVE 180
           QCSRFHEL+EFD+AKRSCRRRLAGHNERRRKSSAE   E T RKG A QSKE HCRQL+E
Sbjct: 167 QCSRFHELTEFDDAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSASQSKEGHCRQLME 226

Query: 181 DQRGRIQMAPPGSSGYKHLHIR 197
           DQR RIQMAP GSSGYK LHIR
Sbjct: 227 DQRSRIQMAPTGSSGYKQLHIR 248

[Close]

BLAST of MS021289 vs. ExPASy Swiss-Prot
Match: Q6Z461 (Squamosa promoter-binding-like protein 13 OS=Oryza sativa subsp. japonica OX=39947 GN=SPL13 PE=2 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.0e-33
Identity = 80/134 (59.70%), Postives = 90/134 (67.16%), Query Frame = 0


Query: 35  VAGGGPHG-------CAALGCSEIEKKKRAAAVPGRGRSGGGVSS-----PSCQAHNCAA 94
           VAGGG  G        A    S       AAA  G GR+GGG  S     P CQ   C  
Sbjct: 58  VAGGGGGGSSSSAAVAAGASSSSSSSSVAAAARRGAGRAGGGAPSGGGGGPRCQVERCGV 117

Query: 95  DLTEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQQCSRFHELSEFDEAKRSCRRRLAGH 154
           DL+EA RY+RRHKVC+ HSK  VV+VAG+RQRFCQQCSRFHEL+EFD+AKRSCRRRLAGH
Sbjct: 118 DLSEAGRYNRRHKVCQTHSKEPVVLVAGLRQRFCQQCSRFHELTEFDDAKRSCRRRLAGH 177

Query: 155 NERRRKSSAEEGTG 157
           NERRRKS+A+   G
Sbjct: 178 NERRRKSAADTAHG 191

[Close]

BLAST of MS021289 vs. ExPASy Swiss-Prot
Match: Q9S7A9 (Squamosa promoter-binding-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=SPL4 PE=1 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.0e-33
Identity = 92/201 (45.77%), Postives = 116/201 (57.71%), Query Frame = 0


Query: 1   METKSFEGRQSFKDKVYREGVVDDDVDYETEEEEVAGGGPHGCAALGCSEIEKKKRAAAV 60
           ME K  +G+   K K Y   +V++D++ +T+EEE  G                  R    
Sbjct: 1   MEGKRSQGQGYMKKKSY---LVEEDMETDTDEEEEVG------------------RDRVR 60

Query: 61  PGRGRSGGGVSSPSCQAHNCAADLTEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQQCS 120
             RG    G S   CQ   C AD+ EAK YHRRHKVCE H+KA+ V ++G+ QRFCQQCS
Sbjct: 61  GSRGSINRGGSLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCS 120

Query: 121 RFHELSEFDEAKRSCRRRLAGHNERRRKSSAE----EGTGRKGPAPQSKESHCRQLVEDQ 180
           RFH+L EFDEAKRSCRRRLAGHNERRRKSS E    EG+GR+G   Q        +   +
Sbjct: 121 RFHDLQEFDEAKRSCRRRLAGHNERRRKSSGESTYGEGSGRRGINGQV------VMQNQE 174

Query: 181 RGRIQMA-PPGSSGYKHLHIR 197
           R R++M  P  +S +K   IR
Sbjct: 181 RSRVEMTLPMPNSSFKRPQIR 174

[Close]

BLAST of MS021289 vs. ExPASy Swiss-Prot
Match: Q38741 (Squamosa promoter-binding protein 1 OS=Antirrhinum majus OX=4151 GN=SBP1 PE=2 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 5.0e-33
Identity = 69/99 (69.70%), Postives = 80/99 (80.81%), Query Frame = 0


Query: 52  EKKKRAAAVPGRGRSGGGVSSPSCQAHNCAADLTEAKRYHRRHKVCEFHSKAAVVMVAGI 111
           E  K+  A+   G+   G +  SCQ  NCAA++T AK YHRRHKVCEFH+KA VV+ +G+
Sbjct: 29  EDSKKTRALTPSGKRASGSTQRSCQVENCAAEMTNAKPYHRRHKVCEFHAKAPVVLHSGL 88

Query: 112 RQRFCQQCSRFHELSEFDEAKRSCRRRLAGHNERRRKSS 151
           +QRFCQQCSRFHELSEFDEAKRSCRRRLAGHNERRRKSS
Sbjct: 89  QQRFCQQCSRFHELSEFDEAKRSCRRRLAGHNERRRKSS 127

[Close]

BLAST of MS021289 vs. ExPASy Swiss-Prot
Match: Q9S758 (Squamosa promoter-binding-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=SPL5 PE=2 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 6.6e-33
Identity = 89/199 (44.72%), Postives = 117/199 (58.79%), Query Frame = 0


Query: 1   METKSFEGRQSFKDKVYREGVVDDDVDYETEEEEVAGGGPHGCAALGCSEIEKKKRAAAV 60
           ME +  + R   KDK     +V+++++   + EE  GG             E K++    
Sbjct: 1   MEGQRTQRRGYLKDKATVSNLVEEEMENGMDGEEEDGGD------------EDKRKKVME 60

Query: 61  PGRGRSGGGVSSPSCQAHNCAADLTEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQQCS 120
             RG S   V S  CQ   C  +LTEAK+Y+RRH+VCE H+KA+   VAG+RQRFCQQCS
Sbjct: 61  RVRGPSTDRVPSRLCQVDRCTVNLTEAKQYYRRHRVCEVHAKASAATVAGVRQRFCQQCS 120

Query: 121 RFHELSEFDEAKRSCRRRLAGHNERRRKSSAE---EGTGRKGPAPQSKESHCRQLVEDQR 180
           RFHEL EFDEAKRSCRRRLAGHNERRRK S +   EG+GR+G + Q  ++  R  V+   
Sbjct: 121 RFHELPEFDEAKRSCRRRLAGHNERRRKISGDSFGEGSGRRGFSGQLIQTQERNRVD--- 180

Query: 181 GRIQMAPPGSSGYKHLHIR 197
              +  P  +S +K   IR
Sbjct: 181 ---RKLPMTNSSFKRPQIR 181

[Close]

BLAST of MS021289 vs. ExPASy Swiss-Prot
Match: P93015 (Squamosa promoter-binding-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=SPL3 PE=1 SV=2)

HSP 1 Score: 133.3 bits (334), Expect = 3.1e-30
Identity = 74/152 (48.68%), Postives = 98/152 (64.47%), Query Frame = 0


Query: 1   METKSFEGRQSFKDKVYREGVVDDDVDYETEEEEVAGGGPHGCAALGCSEIEKKKRAAAV 60
           M     EG++S ++    E   ++  D +T EEE A              +EKK++    
Sbjct: 3   MRRSKAEGKRSLRELSEEEEEEEETEDEDTFEEEEA--------------LEKKQK---- 62

Query: 61  PGRGRSGGGVSSPSCQAHNCAADLTEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQQCS 120
            G+  S  GV    CQ  +C AD+++AK+YH+RHKVC+FH+KA  V ++G+ QRFCQQCS
Sbjct: 63  -GKATSSSGV----CQVESCTADMSKAKQYHKRHKVCQFHAKAPHVRISGLHQRFCQQCS 122

Query: 121 RFHELSEFDEAKRSCRRRLAGHNERRRKSSAE 153
           RFH LSEFDEAKRSCRRRLAGHNERRRKS+ +
Sbjct: 123 RFHALSEFDEAKRSCRRRLAGHNERRRKSTTD 131

[Close]

BLAST of MS021289 vs. ExPASy TrEMBL
Match: A0A6J1FEY0 (squamosa promoter-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111443461 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 4.7e-82
Identity = 160/202 (79.21%), Postives = 172/202 (85.15%), Query Frame = 0


Query: 1   METKSFEGRQSFKDKVYREGVVDDDVDYETEEEEVAGGGPHG---CAALGCSEIEKKKRA 60
           ME KS+EG+ + KDK Y+EGV+DDD++YETEEE+V GGG  G   C ALG  E EKKKR 
Sbjct: 1   MEAKSYEGKHNLKDKAYKEGVIDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60

Query: 61  AAVPGRGRSGGGVSSPSCQAHNCAADLTEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120
            +V GRGRSG GVSSPSCQAHNC  DL+EAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ
Sbjct: 61  TSVSGRGRSGSGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120

Query: 121 QCSRFHELSEFDEAKRSCRRRLAGHNERRRKSSAE---EGTGRKGPAPQSKESHCRQLVE 180
           QCSRFHEL+EFDEAKRSCRRRLAGHNERRRKSSAE   E T RKG A QSKE HCRQL+E
Sbjct: 121 QCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAECQGESTNRKGSASQSKEGHCRQLME 180

Query: 181 DQRGRIQMAPPGSSGYKHLHIR 197
           DQR RIQMAP GSSGYKHLHIR
Sbjct: 181 DQRSRIQMAPTGSSGYKHLHIR 202

[Close]

BLAST of MS021289 vs. ExPASy TrEMBL
Match: A0A6J1IJV6 (squamosa promoter-binding protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111476934 PE=4 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 6.1e-82
Identity = 162/202 (80.20%), Postives = 172/202 (85.15%), Query Frame = 0


Query: 1   METKSFEGRQSFKDKVYREGVVDDDVDYETEEEEVAGGGPHG---CAALGCSEIEKKKRA 60
           ME KS+EG+ + KDK YREGVVDDD++YETEEE+V GGG  G   C ALG  E EKKKR 
Sbjct: 1   MEAKSYEGKHNLKDKAYREGVVDDDLEYETEEEDVGGGGHGGTNACTALGYYENEKKKRG 60

Query: 61  AAVPGRGRSGGGVSSPSCQAHNCAADLTEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120
            AV GRGRSG GVSSPSCQAHNC  DL+EAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ
Sbjct: 61  TAVSGRGRSGVGVSSPSCQAHNCTTDLSEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQ 120

Query: 121 QCSRFHELSEFDEAKRSCRRRLAGHNERRRKSSAE---EGTGRKGPAPQSKESHCRQLVE 180
           QCSRFHEL+EFDEAKRSCRRRLAGHNERRRK+SAE   E T RKGPA QSKE  CRQL+E
Sbjct: 121 QCSRFHELTEFDEAKRSCRRRLAGHNERRRKNSAECQGESTNRKGPASQSKEGQCRQLME 180

Query: 181 DQRGRIQMAPPGSSGYKHLHIR 197
           DQR RIQMAP GSSGYKHLHIR
Sbjct: 181 DQRTRIQMAPTGSSGYKHLHIR 202

[Close]

BLAST of MS021289 vs. ExPASy TrEMBL
Match: A0A0A0L3D9 (Squamosa promoter-binding protein OS=Cucumis sativus OX=3659 GN=Csa_4G631590 PE=4 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 5.7e-80
Identity = 164/206 (79.61%), Postives = 173/206 (83.98%), Query Frame = 0


Query: 1   METKSFEGRQSFKDKVYREGVVDDDVDYETEEEEVAGGGPHG-----CAALGCSEIEKKK 60
           M+ KSFEG+ +FKDK     VVDDD +YETEEEEV GGG  G     C ALG  + EKKK
Sbjct: 1   MDAKSFEGKHNFKDKT----VVDDDFEYETEEEEVGGGGGGGSNSNACNALGYFDNEKKK 60

Query: 61  RAAAVPGRGRSGGGVSSPSCQAHNCAADLTEAKRYHRRHKVCEFHSKAAVVMVAGIRQRF 120
           R AAV GRG+SGG VS PSCQAHNCAADL+EAKRYHRRHKVCEFHSKAA+VMVAGIRQRF
Sbjct: 61  RGAAVSGRGKSGGSVSLPSCQAHNCAADLSEAKRYHRRHKVCEFHSKAAIVMVAGIRQRF 120

Query: 121 CQQCSRFHELSEFDEAKRSCRRRLAGHNERRRKSSAE---EGTGRKGPAP--QSKESHCR 180
           CQQCSRFHEL+EFDEAKRSCRRRLAGHNERRRKSSAE   E T RKG AP  QSKESHCR
Sbjct: 121 CQQCSRFHELTEFDEAKRSCRRRLAGHNERRRKSSAESQGESTSRKGSAPQAQSKESHCR 180

Query: 181 QLVEDQRGRIQMAPPGSSGYKHLHIR 197
           QLVEDQR RIQMAPPGSSGYKHLHIR
Sbjct: 181 QLVEDQRSRIQMAPPGSSGYKHLHIR 202

[Close]

BLAST of MS021289 vs. ExPASy TrEMBL
Match: A0A5D3DWS3 (Squamosa promoter-binding protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001760 PE=4 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 9.1e-78
Identity = 159/204 (77.94%), Postives = 171/204 (83.82%), Query Frame = 0


Query: 1   METKSFEGRQSFKDKVYREGVVDDDVDYETEEEEVAGGG----PHGCAALGCSEIEKKKR 60
           M+ KSFEG+ + KDK     VVDDD +YETEEEEV GGG     + C ALG  + EK+KR
Sbjct: 1   MDAKSFEGKHNSKDKT----VVDDDFEYETEEEEVGGGGGGSNSNACNALGYFDNEKRKR 60

Query: 61  AAAVPGRGRSGGGVSSPSCQAHNCAADLTEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFC 120
            AAV GRG+SGG VSSPSCQAHNCAADL+EAKRYHRRHKVCEFHSKAA+VMVAGIRQRFC
Sbjct: 61  GAAVSGRGKSGGSVSSPSCQAHNCAADLSEAKRYHRRHKVCEFHSKAAIVMVAGIRQRFC 120

Query: 121 QQCSRFHELSEFDEAKRSCRRRLAGHNERRRKSSAE---EGTGRK-GPAPQSKESHCRQL 180
           QQCSRFHEL+EFDEAKRSCRRRLAGHNERRRK+SAE   E T RK  P  QSKESHCRQL
Sbjct: 121 QQCSRFHELTEFDEAKRSCRRRLAGHNERRRKNSAESQGESTSRKSAPQAQSKESHCRQL 180

Query: 181 VEDQRGRIQMAPPGSSGYKHLHIR 197
           VEDQR RIQMAPPGSSGYKHLHIR
Sbjct: 181 VEDQRSRIQMAPPGSSGYKHLHIR 200

[Close]

BLAST of MS021289 vs. ExPASy TrEMBL
Match: A0A1S4E4C7 (squamosa promoter-binding protein 1-like OS=Cucumis melo OX=3656 GN=LOC103501851 PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 3.0e-73
Identity = 152/200 (76.00%), Postives = 164/200 (82.00%), Query Frame = 0


Query: 1   METKSFEGRQSFKDKVYREGVVDDDVDYETEEEEVAGGGPHGCAALGCSEIEKKKRAAAV 60
           M+ KSFEG+ + KDK     VVDDD +YETEEEEV GGG             +K++ AAV
Sbjct: 1   MDAKSFEGKHNSKDKT----VVDDDFEYETEEEEVGGGG------------GEKEKGAAV 60

Query: 61  PGRGRSGGGVSSPSCQAHNCAADLTEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQQCS 120
            GRG+SGG VSSPSCQAHNCAADL+EAKRYHRRHKVCEFHSKAA+VMVAGIRQRFCQQCS
Sbjct: 61  SGRGKSGGSVSSPSCQAHNCAADLSEAKRYHRRHKVCEFHSKAAIVMVAGIRQRFCQQCS 120

Query: 121 RFHELSEFDEAKRSCRRRLAGHNERRRKSSAE---EGTGRK-GPAPQSKESHCRQLVEDQ 180
           RFHEL+EFDEAKRSCRRRLAGHNERRRK+SAE   E T RK  P  QSKESHCRQLVEDQ
Sbjct: 121 RFHELTEFDEAKRSCRRRLAGHNERRRKNSAESQGESTSRKSAPQAQSKESHCRQLVEDQ 180

Query: 181 RGRIQMAPPGSSGYKHLHIR 197
           R RIQMAPPGSSGYKHLHIR
Sbjct: 181 RSRIQMAPPGSSGYKHLHIR 184

[Close]

BLAST of MS021289 vs. TAIR 10
Match: AT1G53160.2 (squamosa promoter binding protein-like 4 )

HSP 1 Score: 144.8 bits (364), Expect = 7.2e-35
Identity = 92/201 (45.77%), Postives = 116/201 (57.71%), Query Frame = 0


Query: 1   METKSFEGRQSFKDKVYREGVVDDDVDYETEEEEVAGGGPHGCAALGCSEIEKKKRAAAV 60
           ME K  +G+   K K Y   +V++D++ +T+EEE  G                  R    
Sbjct: 1   MEGKRSQGQGYMKKKSY---LVEEDMETDTDEEEEVG------------------RDRVR 60

Query: 61  PGRGRSGGGVSSPSCQAHNCAADLTEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQQCS 120
             RG    G S   CQ   C AD+ EAK YHRRHKVCE H+KA+ V ++G+ QRFCQQCS
Sbjct: 61  GSRGSINRGGSLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCS 120

Query: 121 RFHELSEFDEAKRSCRRRLAGHNERRRKSSAE----EGTGRKGPAPQSKESHCRQLVEDQ 180
           RFH+L EFDEAKRSCRRRLAGHNERRRKSS E    EG+GR+G   Q        +   +
Sbjct: 121 RFHDLQEFDEAKRSCRRRLAGHNERRRKSSGESTYGEGSGRRGINGQV------VMQNQE 174

Query: 181 RGRIQMA-PPGSSGYKHLHIR 197
           R R++M  P  +S +K   IR
Sbjct: 181 RSRVEMTLPMPNSSFKRPQIR 174

[Close]

BLAST of MS021289 vs. TAIR 10
Match: AT1G53160.1 (squamosa promoter binding protein-like 4 )

HSP 1 Score: 144.8 bits (364), Expect = 7.2e-35
Identity = 92/201 (45.77%), Postives = 116/201 (57.71%), Query Frame = 0


Query: 1   METKSFEGRQSFKDKVYREGVVDDDVDYETEEEEVAGGGPHGCAALGCSEIEKKKRAAAV 60
           ME K  +G+   K K Y   +V++D++ +T+EEE  G                  R    
Sbjct: 1   MEGKRSQGQGYMKKKSY---LVEEDMETDTDEEEEVG------------------RDRVR 60

Query: 61  PGRGRSGGGVSSPSCQAHNCAADLTEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQQCS 120
             RG    G S   CQ   C AD+ EAK YHRRHKVCE H+KA+ V ++G+ QRFCQQCS
Sbjct: 61  GSRGSINRGGSLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCS 120

Query: 121 RFHELSEFDEAKRSCRRRLAGHNERRRKSSAE----EGTGRKGPAPQSKESHCRQLVEDQ 180
           RFH+L EFDEAKRSCRRRLAGHNERRRKSS E    EG+GR+G   Q        +   +
Sbjct: 121 RFHDLQEFDEAKRSCRRRLAGHNERRRKSSGESTYGEGSGRRGINGQV------VMQNQE 174

Query: 181 RGRIQMA-PPGSSGYKHLHIR 197
           R R++M  P  +S +K   IR
Sbjct: 181 RSRVEMTLPMPNSSFKRPQIR 174

[Close]

BLAST of MS021289 vs. TAIR 10
Match: AT3G15270.1 (squamosa promoter binding protein-like 5 )

HSP 1 Score: 142.1 bits (357), Expect = 4.7e-34
Identity = 89/199 (44.72%), Postives = 117/199 (58.79%), Query Frame = 0


Query: 1   METKSFEGRQSFKDKVYREGVVDDDVDYETEEEEVAGGGPHGCAALGCSEIEKKKRAAAV 60
           ME +  + R   KDK     +V+++++   + EE  GG             E K++    
Sbjct: 1   MEGQRTQRRGYLKDKATVSNLVEEEMENGMDGEEEDGGD------------EDKRKKVME 60

Query: 61  PGRGRSGGGVSSPSCQAHNCAADLTEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQQCS 120
             RG S   V S  CQ   C  +LTEAK+Y+RRH+VCE H+KA+   VAG+RQRFCQQCS
Sbjct: 61  RVRGPSTDRVPSRLCQVDRCTVNLTEAKQYYRRHRVCEVHAKASAATVAGVRQRFCQQCS 120

Query: 121 RFHELSEFDEAKRSCRRRLAGHNERRRKSSAE---EGTGRKGPAPQSKESHCRQLVEDQR 180
           RFHEL EFDEAKRSCRRRLAGHNERRRK S +   EG+GR+G + Q  ++  R  V+   
Sbjct: 121 RFHELPEFDEAKRSCRRRLAGHNERRRKISGDSFGEGSGRRGFSGQLIQTQERNRVD--- 180

Query: 181 GRIQMAPPGSSGYKHLHIR 197
              +  P  +S +K   IR
Sbjct: 181 ---RKLPMTNSSFKRPQIR 181

[Close]

BLAST of MS021289 vs. TAIR 10
Match: AT2G33810.1 (squamosa promoter binding protein-like 3 )

HSP 1 Score: 133.3 bits (334), Expect = 2.2e-31
Identity = 74/152 (48.68%), Postives = 98/152 (64.47%), Query Frame = 0


Query: 1   METKSFEGRQSFKDKVYREGVVDDDVDYETEEEEVAGGGPHGCAALGCSEIEKKKRAAAV 60
           M     EG++S ++    E   ++  D +T EEE A              +EKK++    
Sbjct: 3   MRRSKAEGKRSLRELSEEEEEEEETEDEDTFEEEEA--------------LEKKQK---- 62

Query: 61  PGRGRSGGGVSSPSCQAHNCAADLTEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQQCS 120
            G+  S  GV    CQ  +C AD+++AK+YH+RHKVC+FH+KA  V ++G+ QRFCQQCS
Sbjct: 63  -GKATSSSGV----CQVESCTADMSKAKQYHKRHKVCQFHAKAPHVRISGLHQRFCQQCS 122

Query: 121 RFHELSEFDEAKRSCRRRLAGHNERRRKSSAE 153
           RFH LSEFDEAKRSCRRRLAGHNERRRKS+ +
Sbjct: 123 RFHALSEFDEAKRSCRRRLAGHNERRRKSTTD 131

[Close]

BLAST of MS021289 vs. TAIR 10
Match: AT1G02065.1 (squamosa promoter binding protein-like 8 )

HSP 1 Score: 128.6 bits (322), Expect = 5.3e-30
Identity = 66/108 (61.11%), Postives = 76/108 (70.37%), Query Frame = 0


Query: 61  PGRGRSGGGVSSPSCQAHNCAADLTEAKRYHRRHKVCEFHSKAAVVMVAGIRQRFCQQCS 120
           PG       +S+P CQA  C ADL+ AK YHRRHKVCEFHSKA+ V+ AG+ QRFCQQCS
Sbjct: 174 PGESGMANSLSTPRCQAEGCNADLSHAKHYHRRHKVCEFHSKASTVVAAGLSQRFCQQCS 233

Query: 121 RFHELSEFDEAKRSCRRRLAGHNERRRK----SSAEEGTGRKGPAPQS 165
           RFH LSEFD  KRSCR+RLA HN RRRK    +SA + TG     P+S
Sbjct: 234 RFHLLSEFDNGKRSCRKRLADHNRRRRKCHQSASATQDTGTGKTTPKS 281

The following BLAST results are available for this feature:

BLAST of MS021289 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022937043.1	9.6e-82	79.21	squamosa promoter-binding protein 1-like [Cucurbita moschata]	[more]
XP_023536105.1	1.3e-81	79.21	squamosa promoter-binding protein 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022976580.1	1.3e-81	80.20	squamosa promoter-binding protein 1-like [Cucurbita maxima]	[more]
XP_038898687.1	2.1e-81	81.19	squamosa promoter-binding-like protein 3 [Benincasa hispida]	[more]
KAG7024822.1	8.1e-81	78.71	Squamosa promoter-binding-like protein 5, partial [Cucurbita argyrosperma subsp....	[more]

BLAST of MS021289 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6Z461	1.0e-33	59.70	Squamosa promoter-binding-like protein 13 OS=Oryza sativa subsp. japonica OX=399...	[more]
Q9S7A9	1.0e-33	45.77	Squamosa promoter-binding-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=SPL4...	[more]
Q38741	5.0e-33	69.70	Squamosa promoter-binding protein 1 OS=Antirrhinum majus OX=4151 GN=SBP1 PE=2 SV...	[more]
Q9S758	6.6e-33	44.72	Squamosa promoter-binding-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=SPL5...	[more]
P93015	3.1e-30	48.68	Squamosa promoter-binding-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=SPL3...	[more]

BLAST of MS021289 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FEY0	4.7e-82	79.21	squamosa promoter-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1IJV6	6.1e-82	80.20	squamosa promoter-binding protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC11147...	[more]
A0A0A0L3D9	5.7e-80	79.61	Squamosa promoter-binding protein OS=Cucumis sativus OX=3659 GN=Csa_4G631590 PE=...	[more]
A0A5D3DWS3	9.1e-78	77.94	Squamosa promoter-binding protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S4E4C7	3.0e-73	76.00	squamosa promoter-binding protein 1-like OS=Cucumis melo OX=3656 GN=LOC103501851...	[more]

BLAST of MS021289 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G53160.2	7.2e-35	45.77	squamosa promoter binding protein-like 4	[more]
AT1G53160.1	7.2e-35	45.77	squamosa promoter binding protein-like 4	[more]
AT3G15270.1	4.7e-34	44.72	squamosa promoter binding protein-like 5	[more]
AT2G33810.1	2.2e-31	48.68	squamosa promoter binding protein-like 3	[more]
AT1G02065.1	5.3e-30	61.11	squamosa promoter binding protein-like 8	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004333	SBP domain	PFAM	PF03110	SBP	coord: 75..148 e-value: 1.7E-31 score: 108.3
IPR004333	SBP domain	PROSITE	PS51141	ZF_SBP	coord: 72..149 score: 32.393566
IPR036893	SBP domain superfamily	GENE3D	4.10.1100.10		coord: 65..136 e-value: 4.1E-33 score: 115.3
IPR036893	SBP domain superfamily	SUPERFAMILY	103612	SBT domain	coord: 73..152
None	No IPR available	PIRSR	PIRSR037575-1	PIRSR037575-1	coord: 65..150 e-value: 1.3E-46 score: 154.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 139..196
None	No IPR available	PANTHER	PTHR31251:SF149	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN	coord: 10..196
IPR044817	Squamosa promoter-binding-like protein	PANTHER	PTHR31251	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4	coord: 10..196

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS021289.1	MS021289.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding