MS021250 (gene) Bitter gourd (TR) v1

Overview


Name	MS021250
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like
Location	scaffold358: 460928 .. 461422 (-)
RNA-Seq Expression	MS021250
Synteny	MS021250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAAGTAGTAAAGGGAAGGATGTAGGAGAAGGAGAAGGAGAAGGATCATCGGGTGATCATCATCAGGCGACGGCGGTGCCGGTGATGACGGTGAGTCGATACGAATCACAGAAGCGGCGAGATTGGTACACTTTCGGGCAGTACTTGAGAAACCAGAGACCTCCACTGGCAATGTCACAGTGCAATTCCAGCCATGTGTTGGATTTCCTCCGCTACCTTGACCAGTTTGGGAAGACGAAAGTGCACTTAAATGGGTGTGGATTCTTCGGGCAGCCCGAGCCAGCAGGGCCCTGTACTTGCCCCCTCCGCCAGGCTTGGGGTAGCCTCGACGCCCTCATCGGCCGCCTTCGGGCAGCTTACGAAGAGAACAATGGAGGGTCTTCAGAGACAAACCCATTTGCGAGTGGTGCTATCAGAATCTATTTGCGAGAAGTGAGAGACTCCCAATCCAAGGCGAGAGGAATTCCTTATAAGAAGAGGAACAAAAAGAAG

mRNA sequence

ATGTCAAGTAGTAAAGGGAAGGATGTAGGAGAAGGAGAAGGAGAAGGATCATCGGGTGATCATCATCAGGCGACGGCGGTGCCGGTGATGACGGTGAGTCGATACGAATCACAGAAGCGGCGAGATTGGTACACTTTCGGGCAGTACTTGAGAAACCAGAGACCTCCACTGGCAATGTCACAGTGCAATTCCAGCCATGTGTTGGATTTCCTCCGCTACCTTGACCAGTTTGGGAAGACGAAAGTGCACTTAAATGGGTGTGGATTCTTCGGGCAGCCCGAGCCAGCAGGGCCCTGTACTTGCCCCCTCCGCCAGGCTTGGGGTAGCCTCGACGCCCTCATCGGCCGCCTTCGGGCAGCTTACGAAGAGAACAATGGAGGGTCTTCAGAGACAAACCCATTTGCGAGTGGTGCTATCAGAATCTATTTGCGAGAAGTGAGAGACTCCCAATCCAAGGCGAGAGGAATTCCTTATAAGAAGAGGAACAAAAAGAAG

Coding sequence (CDS)

ATGTCAAGTAGTAAAGGGAAGGATGTAGGAGAAGGAGAAGGAGAAGGATCATCGGGTGATCATCATCAGGCGACGGCGGTGCCGGTGATGACGGTGAGTCGATACGAATCACAGAAGCGGCGAGATTGGTACACTTTCGGGCAGTACTTGAGAAACCAGAGACCTCCACTGGCAATGTCACAGTGCAATTCCAGCCATGTGTTGGATTTCCTCCGCTACCTTGACCAGTTTGGGAAGACGAAAGTGCACTTAAATGGGTGTGGATTCTTCGGGCAGCCCGAGCCAGCAGGGCCCTGTACTTGCCCCCTCCGCCAGGCTTGGGGTAGCCTCGACGCCCTCATCGGCCGCCTTCGGGCAGCTTACGAAGAGAACAATGGAGGGTCTTCAGAGACAAACCCATTTGCGAGTGGTGCTATCAGAATCTATTTGCGAGAAGTGAGAGACTCCCAATCCAAGGCGAGAGGAATTCCTTATAAGAAGAGGAACAAAAAGAAG

Protein sequence

MSSSKGKDVGEGEGEGSSGDHHQATAVPVMTVSRYESQKRRDWYTFGQYLRNQRPPLAMSQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPAGPCTCPLRQAWGSLDALIGRLRAAYEENNGGSSETNPFASGAIRIYLREVRDSQSKARGIPYKKRNKKK

Homology

[Close]

BLAST of MS021250 vs. NCBI nr
Match: XP_022138414.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Momordica charantia])

HSP 1 Score: 339.3 bits (869), Expect = 1.8e-89
Identity = 164/165 (99.39%), Postives = 164/165 (99.39%), Query Frame = 0


Query: 1   MSSSKGKDVGEGEGEGSSGDHHQATAVPVMTVSRYESQKRRDWYTFGQYLRNQRPPLAMS 60
           MSSSKGKDVGEGEGEGSSGDHHQATAVPVMTVSRYESQKRRDWYTFGQYLRNQRPPLAMS
Sbjct: 1   MSSSKGKDVGEGEGEGSSGDHHQATAVPVMTVSRYESQKRRDWYTFGQYLRNQRPPLAMS 60

Query: 61  QCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPAGPCTCPLRQAWGSLDALIGRLRAA 120
           QCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPAGPCTCPLRQAWGSLDALIGRLRAA
Sbjct: 61  QCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPAGPCTCPLRQAWGSLDALIGRLRAA 120

Query: 121 YEENNGGSSETNPFASGAIRIYLREVRDSQSKARGIPYKKRNKKK 166
           YEENNGGS ETNPFASGAIRIYLREVRDSQSKARGIPYKKRNKKK
Sbjct: 121 YEENNGGSLETNPFASGAIRIYLREVRDSQSKARGIPYKKRNKKK 165

[Close]

BLAST of MS021250 vs. NCBI nr
Match: XP_022937367.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata])

HSP 1 Score: 283.5 bits (724), Expect = 1.2e-72
Identity = 141/174 (81.03%), Postives = 149/174 (85.63%), Query Frame = 0


Query: 1   MSSSKGKDVGEGEGEGSS---------GDHHQATAVPVMTVSRYESQKRRDWYTFGQYLR 60
           MS+SKG DVGEG    SS          D +Q  A  V  VSRYESQKRRDWYTFGQYLR
Sbjct: 33  MSTSKGNDVGEGSSSNSSSSSSLVAVINDRNQPAATAVAPVSRYESQKRRDWYTFGQYLR 92

Query: 61  NQRPPLAMSQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPAGPCTCPLRQAWGSLD 120
           NQRPPLA+SQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEP GPCTCPL+QAWGSLD
Sbjct: 93  NQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLKQAWGSLD 152

Query: 121 ALIGRLRAAYEENNGGSSETNPFASGAIRIYLREVRDSQSKARGIPYKKRNKKK 166
           ALIGRLRAAYEE NGGSS+TNPFASGAIR+YLREV+DSQSKARGIPYKK+ KKK
Sbjct: 153 ALIGRLRAAYEE-NGGSSDTNPFASGAIRVYLREVKDSQSKARGIPYKKKKKKK 205

[Close]

BLAST of MS021250 vs. NCBI nr
Match: XP_022981128.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita maxima])

HSP 1 Score: 282.0 bits (720), Expect = 3.4e-72
Identity = 141/171 (82.46%), Postives = 147/171 (85.96%), Query Frame = 0


Query: 1   MSSSKGKDVGEGEGEGSS-------GDHHQATAVPVMTVSRYESQKRRDWYTFGQYLRNQ 60
           MS+SKGKDVGEG    SS        +  Q     +  VSRYESQKRRDWYTFGQYLRNQ
Sbjct: 1   MSTSKGKDVGEGSSSSSSSLVIVDDNNQQQQQQQQLAPVSRYESQKRRDWYTFGQYLRNQ 60

Query: 61  RPPLAMSQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPAGPCTCPLRQAWGSLDAL 120
           RPPLA+SQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEP GPCTCPLRQAWGSLDAL
Sbjct: 61  RPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLRQAWGSLDAL 120

Query: 121 IGRLRAAYEENNGGSSETNPFASGAIRIYLREVRDSQSKARGIPYKKRNKK 165
           IGRLRAAYEE NGGSSETNPFASGAIRIYLRE+RDSQSKARGIPYKK+ KK
Sbjct: 121 IGRLRAAYEE-NGGSSETNPFASGAIRIYLREIRDSQSKARGIPYKKKKKK 170

[Close]

BLAST of MS021250 vs. NCBI nr
Match: KAG7024787.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 281.6 bits (719), Expect = 4.5e-72
Identity = 142/174 (81.61%), Postives = 149/174 (85.63%), Query Frame = 0


Query: 1   MSSSKGKDVGEGEGEGSSG---------DHHQATAVPVMTVSRYESQKRRDWYTFGQYLR 60
           MS+SKG DVGEG    SS          D +Q   VP   VSRYESQKRRDWYTFGQYLR
Sbjct: 1   MSTSKGNDVGEGSSSNSSSSSSLVAVIDDRNQTAVVP---VSRYESQKRRDWYTFGQYLR 60

Query: 61  NQRPPLAMSQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPAGPCTCPLRQAWGSLD 120
           NQRPPLA+SQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEP GPCTCPLRQAWGSLD
Sbjct: 61  NQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLRQAWGSLD 120

Query: 121 ALIGRLRAAYEENNGGSSETNPFASGAIRIYLREVRDSQSKARGIPYKKRNKKK 166
           ALIGRLRAAYEE NGGSS+TNPFASGAIR+YLREV+DSQSKARGIPYKK+ KKK
Sbjct: 121 ALIGRLRAAYEE-NGGSSDTNPFASGAIRVYLREVKDSQSKARGIPYKKKKKKK 170

[Close]

BLAST of MS021250 vs. NCBI nr
Match: KAG6607912.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 280.8 bits (717), Expect = 7.6e-72
Identity = 142/174 (81.61%), Postives = 147/174 (84.48%), Query Frame = 0


Query: 1   MSSSKGKDVGEGEGEGSSG----------DHHQATAVPVMTVSRYESQKRRDWYTFGQYL 60
           MS+SKGKDVGEG    SS            H Q    P   VSRYESQKRRDWYTFGQYL
Sbjct: 1   MSTSKGKDVGEGSSSSSSSLVIVDDNNQQQHQQQQLAP---VSRYESQKRRDWYTFGQYL 60

Query: 61  RNQRPPLAMSQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPAGPCTCPLRQAWGSL 120
           RNQRPPLA+SQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEP GPCTCPL+QAWGSL
Sbjct: 61  RNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLKQAWGSL 120

Query: 121 DALIGRLRAAYEENNGGSSETNPFASGAIRIYLREVRDSQSKARGIPYKKRNKK 165
           DALIGRLRAAYEE NGGSSETNPFASGAIRIYLRE+RDSQSKARGIPYKK+ KK
Sbjct: 121 DALIGRLRAAYEE-NGGSSETNPFASGAIRIYLREIRDSQSKARGIPYKKKKKK 170

[Close]

BLAST of MS021250 vs. ExPASy Swiss-Prot
Match: Q9S7R3 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=LSH10 PE=1 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 4.3e-62
Identity = 112/138 (81.16%), Postives = 123/138 (89.13%), Query Frame = 0


Query: 28  PVMTVSRYESQKRRDWYTFGQYLRNQRPPLAMSQCNSSHVLDFLRYLDQFGKTKVHLNGC 87
           P +T SRYESQKRRDW TFGQYL+NQRPP+ MS C+ +HVLDFLRYLDQFGKTKVH+ GC
Sbjct: 19  PPVTPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKTKVHVPGC 78

Query: 88  GFFGQPEPAGPCTCPLRQAWGSLDALIGRLRAAYEENNGGSSETNPFASGAIRIYLREVR 147
            F+GQPEP  PCTCPLRQAWGSLDALIGRLRAAYEE NGG  ETNPFASGAIR+YLREVR
Sbjct: 79  MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEE-NGGPPETNPFASGAIRVYLREVR 138

Query: 148 DSQSKARGIPYKKRNKKK 166
           + Q+KARGIPYKK+ KKK
Sbjct: 139 ECQAKARGIPYKKKKKKK 155

[Close]

BLAST of MS021250 vs. ExPASy Swiss-Prot
Match: Q9ZVA0 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7 OS=Arabidopsis thaliana OX=3702 GN=LSH7 PE=1 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.3e-58
Identity = 113/167 (67.66%), Postives = 133/167 (79.64%), Query Frame = 0


Query: 3   SSKGKDVGEGEGEGSSGDH---HQATAVP-VMTVSRYESQKRRDWYTFGQYLRNQRPPLA 62
           S+KGK + EG  +  S      HQ  + P    +SRYESQKRRDW TF QYLRNQ+PP+ 
Sbjct: 5   SNKGKGIAEGSSQPQSQPQPQPHQPQSPPNPPALSRYESQKRRDWNTFCQYLRNQQPPVH 64

Query: 63  MSQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPAGPCTCPLRQAWGSLDALIGRLR 122
           +SQC S+H+LDFL+YLDQFGKTKVH++GC FFGQ EPAG C CPL+QAWGSLDALIGRLR
Sbjct: 65  ISQCGSNHILDFLQYLDQFGKTKVHIHGCVFFGQVEPAGQCNCPLKQAWGSLDALIGRLR 124

Query: 123 AAYEENNGGSSETNPFASGAIRIYLREVRDSQSKARGIPYKKRNKKK 166
           AA+EE NGG  E NPFA G IR++LREVRDSQ+KARG+PYKKR K+K
Sbjct: 125 AAFEE-NGGLPERNPFAGGGIRVFLREVRDSQAKARGVPYKKRKKRK 170

[Close]

BLAST of MS021250 vs. ExPASy Swiss-Prot
Match: Q9SN52 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9 OS=Arabidopsis thaliana OX=3702 GN=LSH9 PE=1 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.1e-57
Identity = 105/151 (69.54%), Postives = 126/151 (83.44%), Query Frame = 0


Query: 17  SSGDHHQ--ATAVPVMTVSRYESQKRRDWYTFGQYLRNQRPPLAMSQCNSSHVLDFLRYL 76
           SS +HH+      P   +SRYESQKRRDW TF QYL++Q PPL MSQ + +HVL FLRYL
Sbjct: 18  SSSNHHKQPLPPQPQQPLSRYESQKRRDWNTFVQYLKSQNPPLMMSQFDYTHVLSFLRYL 77

Query: 77  DQFGKTKVHLNGCGFFGQPEPAGPCTCPLRQAWGSLDALIGRLRAAYEENNGGSSETNPF 136
           DQFGKTKVH   C FFGQP+P GPCTCPL+QAWGSLDALIGRLRAAYEE+ GGS +TNPF
Sbjct: 78  DQFGKTKVHHQACVFFGQPDPPGPCTCPLKQAWGSLDALIGRLRAAYEEHGGGSPDTNPF 137

Query: 137 ASGAIRIYLREVRDSQSKARGIPYKKRNKKK 166
           A+G+IR++LREVR+SQ+KARGIPY+K+ ++K
Sbjct: 138 ANGSIRVHLREVRESQAKARGIPYRKKKRRK 168

[Close]

BLAST of MS021250 vs. ExPASy Swiss-Prot
Match: A2XED8 (Protein G1-like7 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_10694 PE=3 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.6e-56
Identity = 105/158 (66.46%), Postives = 127/158 (80.38%), Query Frame = 0


Query: 10  GEGEGEGSSGDHHQATAV--PVMTVSRYESQKRRDWYTFGQYLRNQRPPLAMSQCNSSHV 69
           G G    ++G      A   P   +SRYESQKRRDW TF QYLRN RPPL +++C+ +HV
Sbjct: 5   GPGPSSAAAGGAPAVAAAPQPPAQLSRYESQKRRDWNTFLQYLRNHRPPLTLARCSGAHV 64

Query: 70  LDFLRYLDQFGKTKVHLNGCGFFGQPEPAGPCTCPLRQAWGSLDALIGRLRAAYEENNGG 129
           ++FLRYLDQFGKTKVH +GC F+GQP P GPC CPLRQAWGSLDALIGRLRAAYEE +GG
Sbjct: 65  IEFLRYLDQFGKTKVHASGCAFYGQPSPPGPCPCPLRQAWGSLDALIGRLRAAYEE-SGG 124

Query: 130 SSETNPFASGAIRIYLREVRDSQSKARGIPYKKRNKKK 166
           + E+NPFA+ A+RIYLREVRDSQ+KARGIPY+K+ +K+
Sbjct: 125 TPESNPFAARAVRIYLREVRDSQAKARGIPYEKKKRKR 161

[Close]

BLAST of MS021250 vs. ExPASy Swiss-Prot
Match: Q941W1 (Protein G1-like7 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L7 PE=1 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.6e-56
Identity = 105/158 (66.46%), Postives = 127/158 (80.38%), Query Frame = 0


Query: 10  GEGEGEGSSGDHHQATAV--PVMTVSRYESQKRRDWYTFGQYLRNQRPPLAMSQCNSSHV 69
           G G    ++G      A   P   +SRYESQKRRDW TF QYLRN RPPL +++C+ +HV
Sbjct: 5   GPGPSSAAAGGAPAVAAAPQPPAQLSRYESQKRRDWNTFLQYLRNHRPPLTLARCSGAHV 64

Query: 70  LDFLRYLDQFGKTKVHLNGCGFFGQPEPAGPCTCPLRQAWGSLDALIGRLRAAYEENNGG 129
           ++FLRYLDQFGKTKVH +GC F+GQP P GPC CPLRQAWGSLDALIGRLRAAYEE +GG
Sbjct: 65  IEFLRYLDQFGKTKVHASGCAFYGQPSPPGPCPCPLRQAWGSLDALIGRLRAAYEE-SGG 124

Query: 130 SSETNPFASGAIRIYLREVRDSQSKARGIPYKKRNKKK 166
           + E+NPFA+ A+RIYLREVRDSQ+KARGIPY+K+ +K+
Sbjct: 125 TPESNPFAARAVRIYLREVRDSQAKARGIPYEKKKRKR 161

[Close]

BLAST of MS021250 vs. ExPASy TrEMBL
Match: A0A6J1CA29 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Momordica charantia OX=3673 GN=LOC111009589 PE=3 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 8.7e-90
Identity = 164/165 (99.39%), Postives = 164/165 (99.39%), Query Frame = 0


Query: 1   MSSSKGKDVGEGEGEGSSGDHHQATAVPVMTVSRYESQKRRDWYTFGQYLRNQRPPLAMS 60
           MSSSKGKDVGEGEGEGSSGDHHQATAVPVMTVSRYESQKRRDWYTFGQYLRNQRPPLAMS
Sbjct: 1   MSSSKGKDVGEGEGEGSSGDHHQATAVPVMTVSRYESQKRRDWYTFGQYLRNQRPPLAMS 60

Query: 61  QCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPAGPCTCPLRQAWGSLDALIGRLRAA 120
           QCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPAGPCTCPLRQAWGSLDALIGRLRAA
Sbjct: 61  QCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPAGPCTCPLRQAWGSLDALIGRLRAA 120

Query: 121 YEENNGGSSETNPFASGAIRIYLREVRDSQSKARGIPYKKRNKKK 166
           YEENNGGS ETNPFASGAIRIYLREVRDSQSKARGIPYKKRNKKK
Sbjct: 121 YEENNGGSLETNPFASGAIRIYLREVRDSQSKARGIPYKKRNKKK 165

[Close]

BLAST of MS021250 vs. ExPASy TrEMBL
Match: A0A6J1FB04 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 GN=LOC111443674 PE=3 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 5.7e-73
Identity = 141/174 (81.03%), Postives = 149/174 (85.63%), Query Frame = 0


Query: 1   MSSSKGKDVGEGEGEGSS---------GDHHQATAVPVMTVSRYESQKRRDWYTFGQYLR 60
           MS+SKG DVGEG    SS          D +Q  A  V  VSRYESQKRRDWYTFGQYLR
Sbjct: 33  MSTSKGNDVGEGSSSNSSSSSSLVAVINDRNQPAATAVAPVSRYESQKRRDWYTFGQYLR 92

Query: 61  NQRPPLAMSQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPAGPCTCPLRQAWGSLD 120
           NQRPPLA+SQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEP GPCTCPL+QAWGSLD
Sbjct: 93  NQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLKQAWGSLD 152

Query: 121 ALIGRLRAAYEENNGGSSETNPFASGAIRIYLREVRDSQSKARGIPYKKRNKKK 166
           ALIGRLRAAYEE NGGSS+TNPFASGAIR+YLREV+DSQSKARGIPYKK+ KKK
Sbjct: 153 ALIGRLRAAYEE-NGGSSDTNPFASGAIRVYLREVKDSQSKARGIPYKKKKKKK 205

[Close]

BLAST of MS021250 vs. ExPASy TrEMBL
Match: A0A6J1J187 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=LOC111480369 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.7e-72
Identity = 141/171 (82.46%), Postives = 147/171 (85.96%), Query Frame = 0


Query: 1   MSSSKGKDVGEGEGEGSS-------GDHHQATAVPVMTVSRYESQKRRDWYTFGQYLRNQ 60
           MS+SKGKDVGEG    SS        +  Q     +  VSRYESQKRRDWYTFGQYLRNQ
Sbjct: 1   MSTSKGKDVGEGSSSSSSSLVIVDDNNQQQQQQQQLAPVSRYESQKRRDWYTFGQYLRNQ 60

Query: 61  RPPLAMSQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPAGPCTCPLRQAWGSLDAL 120
           RPPLA+SQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEP GPCTCPLRQAWGSLDAL
Sbjct: 61  RPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLRQAWGSLDAL 120

Query: 121 IGRLRAAYEENNGGSSETNPFASGAIRIYLREVRDSQSKARGIPYKKRNKK 165
           IGRLRAAYEE NGGSSETNPFASGAIRIYLRE+RDSQSKARGIPYKK+ KK
Sbjct: 121 IGRLRAAYEE-NGGSSETNPFASGAIRIYLREIRDSQSKARGIPYKKKKKK 170

[Close]

BLAST of MS021250 vs. ExPASy TrEMBL
Match: A0A6J1FP48 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 GN=LOC111446008 PE=3 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 4.8e-72
Identity = 142/174 (81.61%), Postives = 147/174 (84.48%), Query Frame = 0


Query: 1   MSSSKGKDVGEGEGEGSSG----------DHHQATAVPVMTVSRYESQKRRDWYTFGQYL 60
           MS+SKGKDVGEG    SS            H Q    P   VSRYESQKRRDWYTFGQYL
Sbjct: 1   MSTSKGKDVGEGSSSSSSSLVIVDDNNQQQHQQQQFAP---VSRYESQKRRDWYTFGQYL 60

Query: 61  RNQRPPLAMSQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPAGPCTCPLRQAWGSL 120
           RNQRPPLA+SQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEP GPCTCPL+QAWGSL
Sbjct: 61  RNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLKQAWGSL 120

Query: 121 DALIGRLRAAYEENNGGSSETNPFASGAIRIYLREVRDSQSKARGIPYKKRNKK 165
           DALIGRLRAAYEE NGGSSETNPFASGAIRIYLRE+RDSQSKARGIPYKK+ KK
Sbjct: 121 DALIGRLRAAYEE-NGGSSETNPFASGAIRIYLREIRDSQSKARGIPYKKKKKK 170

[Close]

BLAST of MS021250 vs. ExPASy TrEMBL
Match: A0A5D3DWV8 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001030 PE=3 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 1.4e-71
Identity = 143/190 (75.26%), Postives = 150/190 (78.95%), Query Frame = 0


Query: 1   MSSSKGKDVGEGEGEGSSGD----------------HHQA---------TAVPVMTVSRY 60
           MSSSKGKDV EG    SS                  HHQ           A P   +SRY
Sbjct: 1   MSSSKGKDVHEGSSSNSSSSSSALMVVVDDQNHHHHHHQQQQQQFERGDEAAPTPVISRY 60

Query: 61  ESQKRRDWYTFGQYLRNQRPPLAMSQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEP 120
           ESQKRRDWYTFGQYLRNQRPPLA+SQCNSSHVL+FLRYLDQFGKTKVHLNGCGFFG+PEP
Sbjct: 61  ESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGEPEP 120

Query: 121 AGPCTCPLRQAWGSLDALIGRLRAAYEENNGGSSETNPFASGAIRIYLREVRDSQSKARG 166
           AGPCTCPLRQAWGSLDALIGRLRAAYEE NGGSS+TNPFASGAIR+YLREVRDSQSKARG
Sbjct: 121 AGPCTCPLRQAWGSLDALIGRLRAAYEE-NGGSSDTNPFASGAIRVYLREVRDSQSKARG 180

[Close]

BLAST of MS021250 vs. TAIR 10
Match: AT2G42610.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 238.8 bits (608), Expect = 3.1e-63
Identity = 112/138 (81.16%), Postives = 123/138 (89.13%), Query Frame = 0


Query: 28  PVMTVSRYESQKRRDWYTFGQYLRNQRPPLAMSQCNSSHVLDFLRYLDQFGKTKVHLNGC 87
           P +T SRYESQKRRDW TFGQYL+NQRPP+ MS C+ +HVLDFLRYLDQFGKTKVH+ GC
Sbjct: 19  PPVTPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKTKVHVPGC 78

Query: 88  GFFGQPEPAGPCTCPLRQAWGSLDALIGRLRAAYEENNGGSSETNPFASGAIRIYLREVR 147
            F+GQPEP  PCTCPLRQAWGSLDALIGRLRAAYEE NGG  ETNPFASGAIR+YLREVR
Sbjct: 79  MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEE-NGGPPETNPFASGAIRVYLREVR 138

Query: 148 DSQSKARGIPYKKRNKKK 166
           + Q+KARGIPYKK+ KKK
Sbjct: 139 ECQAKARGIPYKKKKKKK 155

[Close]

BLAST of MS021250 vs. TAIR 10
Match: AT2G42610.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 238.8 bits (608), Expect = 3.1e-63
Identity = 112/138 (81.16%), Postives = 123/138 (89.13%), Query Frame = 0


Query: 28  PVMTVSRYESQKRRDWYTFGQYLRNQRPPLAMSQCNSSHVLDFLRYLDQFGKTKVHLNGC 87
           P +T SRYESQKRRDW TFGQYL+NQRPP+ MS C+ +HVLDFLRYLDQFGKTKVH+ GC
Sbjct: 19  PPVTPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKTKVHVPGC 78

Query: 88  GFFGQPEPAGPCTCPLRQAWGSLDALIGRLRAAYEENNGGSSETNPFASGAIRIYLREVR 147
            F+GQPEP  PCTCPLRQAWGSLDALIGRLRAAYEE NGG  ETNPFASGAIR+YLREVR
Sbjct: 79  MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEE-NGGPPETNPFASGAIRVYLREVR 138

Query: 148 DSQSKARGIPYKKRNKKK 166
           + Q+KARGIPYKK+ KKK
Sbjct: 139 ECQAKARGIPYKKKKKKK 155

[Close]

BLAST of MS021250 vs. TAIR 10
Match: AT1G78815.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 227.3 bits (578), Expect = 9.3e-60
Identity = 113/167 (67.66%), Postives = 133/167 (79.64%), Query Frame = 0


Query: 3   SSKGKDVGEGEGEGSSGDH---HQATAVP-VMTVSRYESQKRRDWYTFGQYLRNQRPPLA 62
           S+KGK + EG  +  S      HQ  + P    +SRYESQKRRDW TF QYLRNQ+PP+ 
Sbjct: 5   SNKGKGIAEGSSQPQSQPQPQPHQPQSPPNPPALSRYESQKRRDWNTFCQYLRNQQPPVH 64

Query: 63  MSQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPAGPCTCPLRQAWGSLDALIGRLR 122
           +SQC S+H+LDFL+YLDQFGKTKVH++GC FFGQ EPAG C CPL+QAWGSLDALIGRLR
Sbjct: 65  ISQCGSNHILDFLQYLDQFGKTKVHIHGCVFFGQVEPAGQCNCPLKQAWGSLDALIGRLR 124

Query: 123 AAYEENNGGSSETNPFASGAIRIYLREVRDSQSKARGIPYKKRNKKK 166
           AA+EE NGG  E NPFA G IR++LREVRDSQ+KARG+PYKKR K+K
Sbjct: 125 AAFEE-NGGLPERNPFAGGGIRVFLREVRDSQAKARGVPYKKRKKRK 170

[Close]

BLAST of MS021250 vs. TAIR 10
Match: AT4G18610.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 224.2 bits (570), Expect = 7.9e-59
Identity = 105/151 (69.54%), Postives = 126/151 (83.44%), Query Frame = 0


Query: 17  SSGDHHQ--ATAVPVMTVSRYESQKRRDWYTFGQYLRNQRPPLAMSQCNSSHVLDFLRYL 76
           SS +HH+      P   +SRYESQKRRDW TF QYL++Q PPL MSQ + +HVL FLRYL
Sbjct: 18  SSSNHHKQPLPPQPQQPLSRYESQKRRDWNTFVQYLKSQNPPLMMSQFDYTHVLSFLRYL 77

Query: 77  DQFGKTKVHLNGCGFFGQPEPAGPCTCPLRQAWGSLDALIGRLRAAYEENNGGSSETNPF 136
           DQFGKTKVH   C FFGQP+P GPCTCPL+QAWGSLDALIGRLRAAYEE+ GGS +TNPF
Sbjct: 78  DQFGKTKVHHQACVFFGQPDPPGPCTCPLKQAWGSLDALIGRLRAAYEEHGGGSPDTNPF 137

Query: 137 ASGAIRIYLREVRDSQSKARGIPYKKRNKKK 166
           A+G+IR++LREVR+SQ+KARGIPY+K+ ++K
Sbjct: 138 ANGSIRVHLREVRESQAKARGIPYRKKKRRK 168

[Close]

BLAST of MS021250 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 215.7 bits (548), Expect = 2.8e-56
Identity = 99/134 (73.88%), Postives = 117/134 (87.31%), Query Frame = 0


Query: 32  VSRYESQKRRDWYTFGQYLRNQRPPLAMSQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFG 91
           +SRYE+QKRRDW TFGQYLRN RPPL++S+C+ +HVL+FLRYLDQFGKTKVH + C FFG
Sbjct: 46  LSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFG 105

Query: 92  QPEPAGPCTCPLRQAWGSLDALIGRLRAAYEENNGGSSETNPFASGAIRIYLREVRDSQS 151
            P P  PC CPLRQAWGSLDALIGRLRAA+EE NGGS ETNPF + A+R+YLREVRDSQ+
Sbjct: 106 HPNPPAPCACPLRQAWGSLDALIGRLRAAFEE-NGGSPETNPFGARAVRLYLREVRDSQA 165

Query: 152 KARGIPYKKRNKKK 166
           KARGI Y+K+ +K+
Sbjct: 166 KARGISYEKKKRKR 178

The following BLAST results are available for this feature:

BLAST of MS021250 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022138414.1	1.8e-89	99.39	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Momordica charantia]	[more]
XP_022937367.1	1.2e-72	81.03	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata]	[more]
XP_022981128.1	3.4e-72	82.46	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita maxima]	[more]
KAG7024787.1	4.5e-72	81.61	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma sub...	[more]
KAG6607912.1	7.6e-72	81.61	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma sub...	[more]

BLAST of MS021250 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S7R3	4.3e-62	81.16	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=L...	[more]
Q9ZVA0	1.3e-58	67.66	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
Q9SN52	1.1e-57	69.54	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
A2XED8	1.6e-56	66.46	Protein G1-like7 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_10694 PE=3 SV=1	[more]
Q941W1	1.6e-56	66.46	Protein G1-like7 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L7 PE=1 SV=1	[more]

BLAST of MS021250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CA29	8.7e-90	99.39	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Momordica charantia OX=3673 ...	[more]
A0A6J1FB04	5.7e-73	81.03	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1J187	1.7e-72	82.46	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1FP48	4.8e-72	81.61	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A5D3DWV8	1.4e-71	75.26	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo var. makuwa OX=...	[more]

BLAST of MS021250 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42610.1	3.1e-63	81.16	Protein of unknown function (DUF640)	[more]
AT2G42610.2	3.1e-63	81.16	Protein of unknown function (DUF640)	[more]
AT1G78815.1	9.3e-60	67.66	Protein of unknown function (DUF640)	[more]
AT4G18610.1	7.9e-59	69.54	Protein of unknown function (DUF640)	[more]
AT3G23290.2	2.8e-56	73.88	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 26..148 e-value: 4.7E-62 score: 207.8
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 34..162 score: 67.043007
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	PANTHER	PTHR31165:SF9	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 6	coord: 1..165
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 1..165

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS021250.1	MS021250.1	mRNA