MS021217 (gene) Bitter gourd (TR) v1

Overview


Name	MS021217
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Pentatricopeptide repeat-containing protein
Location	scaffold358: 86896 .. 87780 (+)
RNA-Seq Expression	MS021217
Synteny	MS021217

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAGATGCCTGTACTTTTAACATTTTGATTCATGCTGCCTATTTATGTGGGAATTCGGATGATGCATGGGAGCTGTTCGATGAAATGCGAAAGAGAGGTATTCACCCTAATGTGGTCACTTTTGGAACTTTGATTTATGGCCTTTCTCTGAATTCTAAGTTGAAAGAAGCATTGAAATTGAAAGAAGATATGGTTAGAGTGTGTGGGATTTTGCCTAATGCGTCTATATACGCTACTTTGATTAAAGGGTTCTGTGGGATTGGTGAATTGATTTTGGCTTTCGAACTAAAGGAAGAGATGGTGACAAACAAGGTCAAAATGGACTCAGCGATTTATTCTACTTTAATTAGCGCGCTCTTTAAACATGGAAGAAAAGAAGAAGTTTGTGACATTTTAGGAGAGATGAGAGAGAATGGGTGCAAACCCGATACGGTAACCTACAATGCCATGATCAGTGGGCACTGTAAAGAAAACGATCTCGAATCTGCGTTTAGAGTTTTGGATGAGATGGTGGAGAAAGGGTGTAAGCCAGATGTGATTAGTTTCAATTCTATCATCGGAGAGTTATGCAAAAAGGGGAAATGGAATGAAGCTATTGACTTACTTGAAGATATGCCTAGACGTGGCTGCTCTCCTGATGTGGTATCATACAGGACACTTTTCGATGGGCTTTGTGAAACGATGCAGTTACAGAAAGCAACTTCCATACTGGACGAGATGATCTTCAAGGGTTATGTGCCTCGTTCTGAAAGCATAAACAAACTCGTCGACGGGTTATGCCAGGAATGCGATGTGGAGCTGTTGTGGATGGTTTTAGACAGTCTAGGAAGAGGAAATGCCATGAATATGGACACATGGGCTAGAGTTATTGCTTTGGTTTGCAAG

mRNA sequence

CCAGATGCCTGTACTTTTAACATTTTGATTCATGCTGCCTATTTATGTGGGAATTCGGATGATGCATGGGAGCTGTTCGATGAAATGCGAAAGAGAGGTATTCACCCTAATGTGGTCACTTTTGGAACTTTGATTTATGGCCTTTCTCTGAATTCTAAGTTGAAAGAAGCATTGAAATTGAAAGAAGATATGGTTAGAGTGTGTGGGATTTTGCCTAATGCGTCTATATACGCTACTTTGATTAAAGGGTTCTGTGGGATTGGTGAATTGATTTTGGCTTTCGAACTAAAGGAAGAGATGGTGACAAACAAGGTCAAAATGGACTCAGCGATTTATTCTACTTTAATTAGCGCGCTCTTTAAACATGGAAGAAAAGAAGAAGTTTGTGACATTTTAGGAGAGATGAGAGAGAATGGGTGCAAACCCGATACGGTAACCTACAATGCCATGATCAGTGGGCACTGTAAAGAAAACGATCTCGAATCTGCGTTTAGAGTTTTGGATGAGATGGTGGAGAAAGGGTGTAAGCCAGATGTGATTAGTTTCAATTCTATCATCGGAGAGTTATGCAAAAAGGGGAAATGGAATGAAGCTATTGACTTACTTGAAGATATGCCTAGACGTGGCTGCTCTCCTGATGTGGTATCATACAGGACACTTTTCGATGGGCTTTGTGAAACGATGCAGTTACAGAAAGCAACTTCCATACTGGACGAGATGATCTTCAAGGGTTATGTGCCTCGTTCTGAAAGCATAAACAAACTCGTCGACGGGTTATGCCAGGAATGCGATGTGGAGCTGTTGTGGATGGTTTTAGACAGTCTAGGAAGAGGAAATGCCATGAATATGGACACATGGGCTAGAGTTATTGCTTTGGTTTGCAAG

Coding sequence (CDS)

CCAGATGCCTGTACTTTTAACATTTTGATTCATGCTGCCTATTTATGTGGGAATTCGGATGATGCATGGGAGCTGTTCGATGAAATGCGAAAGAGAGGTATTCACCCTAATGTGGTCACTTTTGGAACTTTGATTTATGGCCTTTCTCTGAATTCTAAGTTGAAAGAAGCATTGAAATTGAAAGAAGATATGGTTAGAGTGTGTGGGATTTTGCCTAATGCGTCTATATACGCTACTTTGATTAAAGGGTTCTGTGGGATTGGTGAATTGATTTTGGCTTTCGAACTAAAGGAAGAGATGGTGACAAACAAGGTCAAAATGGACTCAGCGATTTATTCTACTTTAATTAGCGCGCTCTTTAAACATGGAAGAAAAGAAGAAGTTTGTGACATTTTAGGAGAGATGAGAGAGAATGGGTGCAAACCCGATACGGTAACCTACAATGCCATGATCAGTGGGCACTGTAAAGAAAACGATCTCGAATCTGCGTTTAGAGTTTTGGATGAGATGGTGGAGAAAGGGTGTAAGCCAGATGTGATTAGTTTCAATTCTATCATCGGAGAGTTATGCAAAAAGGGGAAATGGAATGAAGCTATTGACTTACTTGAAGATATGCCTAGACGTGGCTGCTCTCCTGATGTGGTATCATACAGGACACTTTTCGATGGGCTTTGTGAAACGATGCAGTTACAGAAAGCAACTTCCATACTGGACGAGATGATCTTCAAGGGTTATGTGCCTCGTTCTGAAAGCATAAACAAACTCGTCGACGGGTTATGCCAGGAATGCGATGTGGAGCTGTTGTGGATGGTTTTAGACAGTCTAGGAAGAGGAAATGCCATGAATATGGACACATGGGCTAGAGTTATTGCTTTGGTTTGCAAG

Protein sequence

PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKLKEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEMVTNKVKMDSAIYSTLISALFKHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVISFNSIIGELCKKGKWNEAIDLLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEMIFKGYVPRSESINKLVDGLCQECDVELLWMVLDSLGRGNAMNMDTWARVIALVCK

Homology

[Close]

BLAST of MS021217 vs. NCBI nr
Match: XP_022131752.1 (putative pentatricopeptide repeat-containing protein At1g53330 [Momordica charantia])

HSP 1 Score: 611.3 bits (1575), Expect = 4.4e-171
Identity = 293/295 (99.32%), Postives = 295/295 (100.00%), Query Frame = 0


Query: 1   PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKL 60
           PDACTFNILIHAAYLCGNSDDAWE+FDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKL
Sbjct: 150 PDACTFNILIHAAYLCGNSDDAWEVFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKL 209

Query: 61  KEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEMVTNKVKMDSAIYSTLISALF 120
           KEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEMVT+KVKMDSAIYSTLISALF
Sbjct: 210 KEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEMVTSKVKMDSAIYSTLISALF 269

Query: 121 KHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVI 180
           KHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVI
Sbjct: 270 KHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVI 329

Query: 181 SFNSIIGELCKKGKWNEAIDLLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEM 240
           SFNSIIGELCKKGKWNEAIDLLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEM
Sbjct: 330 SFNSIIGELCKKGKWNEAIDLLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEM 389

Query: 241 IFKGYVPRSESINKLVDGLCQECDVELLWMVLDSLGRGNAMNMDTWARVIALVCK 296
           IFKGYVPRSESINKLVDGLCQECDVELLWMVLDSLGRGNAMNMDTWARVIALVCK
Sbjct: 390 IFKGYVPRSESINKLVDGLCQECDVELLWMVLDSLGRGNAMNMDTWARVIALVCK 444

[Close]

BLAST of MS021217 vs. NCBI nr
Match: XP_023523314.1 (putative pentatricopeptide repeat-containing protein At1g53330 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 527.7 bits (1358), Expect = 6.4e-146
Identity = 250/295 (84.75%), Postives = 275/295 (93.22%), Query Frame = 0


Query: 1   PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKL 60
           PDACTFNILIHAA LCG+ DDAWE+FDEM KRG+ PNVVTFGTLIYGLSLNSKL EAL+L
Sbjct: 150 PDACTFNILIHAACLCGDLDDAWEVFDEMPKRGVKPNVVTFGTLIYGLSLNSKLDEALRL 209

Query: 61  KEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEMVTNKVKMDSAIYSTLISALF 120
           KEDMVRV GILPNASIYATLIKGFCGIG+L LAF+LKEEMVTNKVK+DSAIYST ISALF
Sbjct: 210 KEDMVRVYGILPNASIYATLIKGFCGIGDLNLAFKLKEEMVTNKVKLDSAIYSTFISALF 269

Query: 121 KHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVI 180
           KHGRKEEV +IL EM ENGCKPDTVTYNAMI+G CKENDLESA++VLDEMV+KGCKPDVI
Sbjct: 270 KHGRKEEVPEILAEMGENGCKPDTVTYNAMINGQCKENDLESAYKVLDEMVKKGCKPDVI 329

Query: 181 SFNSIIGELCKKGKWNEAIDLLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEM 240
           SFN+I+G LCK+GKW++A+DLL DMPRRGCSPDVVSYRTLFDGLCE MQLQ+ATSILDEM
Sbjct: 330 SFNTIMGRLCKEGKWDKAMDLLADMPRRGCSPDVVSYRTLFDGLCEMMQLQEATSILDEM 389

Query: 241 IFKGYVPRSESINKLVDGLCQECDVELLWMVLDSLGRGNAMNMDTWARVIALVCK 296
           IFKGYVPRSESINKL+D LCQE ++ELLWMVL+SLGRGN MN+D WARV+A VCK
Sbjct: 390 IFKGYVPRSESINKLIDRLCQESNMELLWMVLNSLGRGNVMNVDIWARVVAFVCK 444

[Close]

BLAST of MS021217 vs. NCBI nr
Match: KAG6607949.1 (putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 520.0 bits (1338), Expect = 1.3e-143
Identity = 248/295 (84.07%), Postives = 272/295 (92.20%), Query Frame = 0


Query: 1   PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKL 60
           PDAC+FNILIHAA LCG+ DDAWE+FDEM KRG+ PNVVTFGTLIYGLSLNSKL EAL+L
Sbjct: 150 PDACSFNILIHAACLCGDLDDAWEVFDEMPKRGVKPNVVTFGTLIYGLSLNSKLDEALRL 209

Query: 61  KEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEMVTNKVKMDSAIYSTLISALF 120
           KEDMVRV  ILPNASIYATLIKGFCGIG+L LAF+LKEEMVTNKVK+DSAIYST ISALF
Sbjct: 210 KEDMVRVYRILPNASIYATLIKGFCGIGDLNLAFKLKEEMVTNKVKLDSAIYSTFISALF 269

Query: 121 KHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVI 180
           KHGRKEEV  IL EM ENGCKPDTVTYNAMI+G CKENDLESA+RVLDEMV+KGCKPDVI
Sbjct: 270 KHGRKEEVPGILAEMGENGCKPDTVTYNAMINGQCKENDLESAYRVLDEMVKKGCKPDVI 329

Query: 181 SFNSIIGELCKKGKWNEAIDLLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEM 240
           SFN+I+G LCK+GKW++A+DLL DMPRRGCSPDVVSYRTLFDGLCE MQLQ+ATSILDEM
Sbjct: 330 SFNTIMGRLCKEGKWDKAMDLLADMPRRGCSPDVVSYRTLFDGLCEMMQLQEATSILDEM 389

Query: 241 IFKGYVPRSESINKLVDGLCQECDVELLWMVLDSLGRGNAMNMDTWARVIALVCK 296
           IFKGYVPRSESINKLVD LCQE ++ELLWMV++SL RGN MN+D WARV+A VCK
Sbjct: 390 IFKGYVPRSESINKLVDRLCQESNMELLWMVVNSLARGNVMNVDIWARVVAFVCK 444

[Close]

BLAST of MS021217 vs. NCBI nr
Match: KAG7037464.1 (putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 519.6 bits (1337), Expect = 1.7e-143
Identity = 248/295 (84.07%), Postives = 271/295 (91.86%), Query Frame = 0


Query: 1   PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKL 60
           PDACTFNILIHAA LCG+ DDAWE+FDEM KRG  PNVVTFGTLIYGLSLNSKL EAL+L
Sbjct: 150 PDACTFNILIHAACLCGDLDDAWEVFDEMPKRGAKPNVVTFGTLIYGLSLNSKLDEALRL 209

Query: 61  KEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEMVTNKVKMDSAIYSTLISALF 120
           KEDMVRV  ILPNASIYATLIKGFCGIG+L LAF+LKEEMVTNKVK+DSAIYST ISA F
Sbjct: 210 KEDMVRVYRILPNASIYATLIKGFCGIGDLNLAFKLKEEMVTNKVKLDSAIYSTFISAFF 269

Query: 121 KHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVI 180
           KHGRKEEV +IL EM ENGCKPDTVTYNAMI+G CKENDLESA+RVLDEMV+KGCKPDVI
Sbjct: 270 KHGRKEEVPEILAEMGENGCKPDTVTYNAMINGQCKENDLESAYRVLDEMVKKGCKPDVI 329

Query: 181 SFNSIIGELCKKGKWNEAIDLLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEM 240
           SFN+I+G LCK+GKW++A+DLL DMPRRGCSPDVVSYRTLFDGLCE MQLQ+ATSILDEM
Sbjct: 330 SFNTIMGRLCKEGKWDKAMDLLADMPRRGCSPDVVSYRTLFDGLCEMMQLQEATSILDEM 389

Query: 241 IFKGYVPRSESINKLVDGLCQECDVELLWMVLDSLGRGNAMNMDTWARVIALVCK 296
           IFKGYVPRSESINKLVD LCQE ++ELLWMV++SL RGN MN+D WARV+A VCK
Sbjct: 390 IFKGYVPRSESINKLVDRLCQESNMELLWMVVNSLARGNVMNVDIWARVVAFVCK 444

[Close]

BLAST of MS021217 vs. NCBI nr
Match: XP_022941521.1 (LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g53330 [Cucurbita moschata])

HSP 1 Score: 519.2 bits (1336), Expect = 2.3e-143
Identity = 248/295 (84.07%), Postives = 271/295 (91.86%), Query Frame = 0


Query: 1   PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKL 60
           PDACTFNILIHAA LCG+ DDAWE+FDEM KRG+ PNVVTFGTLIYGLSLNSKL EAL+L
Sbjct: 168 PDACTFNILIHAACLCGDLDDAWEVFDEMPKRGVKPNVVTFGTLIYGLSLNSKLDEALRL 227

Query: 61  KEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEMVTNKVKMDSAIYSTLISALF 120
           KEDMVRV  ILPNASIYATLIKGFCG G+L LAF+LKEEMVTNKVK+DSAIYST ISALF
Sbjct: 228 KEDMVRVYRILPNASIYATLIKGFCGSGDLNLAFKLKEEMVTNKVKLDSAIYSTFISALF 287

Query: 121 KHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVI 180
           KHGRKEEV  IL EM ENGCKPDTVTYNAMI+G CKENDLESA+RVLDEMV+KGCKPDVI
Sbjct: 288 KHGRKEEVPGILAEMGENGCKPDTVTYNAMINGQCKENDLESAYRVLDEMVKKGCKPDVI 347

Query: 181 SFNSIIGELCKKGKWNEAIDLLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEM 240
           SFN+I+G LCK+GKW++A+DLL DMPRRGCSPDVVSYRTLFDGLCE MQLQ+ATSILDEM
Sbjct: 348 SFNTIMGRLCKEGKWDKAMDLLADMPRRGCSPDVVSYRTLFDGLCEMMQLQEATSILDEM 407

Query: 241 IFKGYVPRSESINKLVDGLCQECDVELLWMVLDSLGRGNAMNMDTWARVIALVCK 296
           IFKGYVPRSESINKLVD LCQE ++ELLWMV++SL RGN MN+D WARV+A VCK
Sbjct: 408 IFKGYVPRSESINKLVDRLCQESNMELLWMVVNSLARGNVMNVDIWARVVAFVCK 462

[Close]

BLAST of MS021217 vs. ExPASy Swiss-Prot
Match: Q9MAG8 (Putative pentatricopeptide repeat-containing protein At1g53330 OS=Arabidopsis thaliana OX=3702 GN=At1g53330 PE=3 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 8.2e-96
Identity = 171/295 (57.97%), Postives = 212/295 (71.86%), Query Frame = 0


Query: 1   PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKL 60
           PDACT+NILIH     G  DDA +LFDEM K+ + P  VTFGTLI+GL  +S++KEALK+
Sbjct: 150 PDACTYNILIHGCSQSGCFDDALKLFDEMVKKKVKPTGVTFGTLIHGLCKDSRVKEALKM 209

Query: 61  KEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEMVTNKVKMDSAIYSTLISALF 120
           K DM++V G+ P   IYA+LIK  C IGEL  AF+LK+E    K+K+D+AIYSTLIS+L 
Sbjct: 210 KHDMLKVYGVRPTVHIYASLIKALCQIGELSFAFKLKDEAYEGKIKVDAAIYSTLISSLI 269

Query: 121 KHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVI 180
           K GR  EV  IL EM E GCKPDTVTYN +I+G C END ESA RVLDEMVEKG KPDVI
Sbjct: 270 KAGRSNEVSMILEEMSEKGCKPDTVTYNVLINGFCVENDSESANRVLDEMVEKGLKPDVI 329

Query: 181 SFNSIIGELCKKGKWNEAIDLLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEM 240
           S+N I+G   +  KW EA  L EDMPRRGCSPD +SYR +FDGLCE +Q ++A  ILDEM
Sbjct: 330 SYNMILGVFFRIKKWEEATYLFEDMPRRGCSPDTLSYRIVFDGLCEGLQFEEAAVILDEM 389

Query: 241 IFKGYVPRSESINKLVDGLCQECDVELLWMVLDSLGRGNAMNMDTWARVIALVCK 296
           +FKGY PR + +   +  LC+   +E+L  V+ SL RG A + D W+ +I  +CK
Sbjct: 390 LFKGYKPRRDRLEGFLQKLCESGKLEILSKVISSLHRGIAGDADVWSVMIPTMCK 444

[Close]

BLAST of MS021217 vs. ExPASy Swiss-Prot
Match: Q3EDF8 (Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana OX=3702 GN=At1g09900 PE=2 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.2e-46
Identity = 91/266 (34.21%), Postives = 150/266 (56.39%), Query Frame = 0


Query: 1   PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKL 60
           PD  T+ ILI A         A +L DEMR RG  P+VVT+  L+ G+    +L EA+K 
Sbjct: 237 PDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKF 296

Query: 61  KEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEMVTNKVKMDSAIYSTLISALF 120
             DM    G  PN   +  +++  C  G  + A +L  +M+          ++ LI+ L 
Sbjct: 297 LNDMPS-SGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLC 356

Query: 121 KHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVI 180
           + G      DIL +M ++GC+P++++YN ++ G CKE  ++ A   L+ MV +GC PD++
Sbjct: 357 RKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIV 416

Query: 181 SFNSIIGELCKKGKWNEAIDLLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEM 240
           ++N+++  LCK GK  +A+++L  +  +GCSP +++Y T+ DGL +  +  KA  +LDEM
Sbjct: 417 TYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEM 476

Query: 241 IFKGYVPRSESINKLVDGLCQECDVE 267
             K   P + + + LV GL +E  V+
Sbjct: 477 RAKDLKPDTITYSSLVGGLSREGKVD 501

[Close]

BLAST of MS021217 vs. ExPASy Swiss-Prot
Match: Q9ASZ8 (Pentatricopeptide repeat-containing protein At1g12620 OS=Arabidopsis thaliana OX=3702 GN=At1g12620 PE=2 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 2.7e-46
Identity = 95/261 (36.40%), Postives = 145/261 (55.56%), Query Frame = 0


Query: 1   PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKL 60
           PD  TF+ LI+   L G   +A EL D M + G  P ++T   L+ GL LN K+ +A+ L
Sbjct: 140 PDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLL 199

Query: 61  KEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEMVTNKVKMDSAIYSTLISALF 120
            + MV   G  PN   Y  ++K  C  G+  LA EL  +M   K+K+D+  YS +I  L 
Sbjct: 200 IDRMVET-GFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLC 259

Query: 121 KHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVI 180
           K G  +   ++  EM   G K D + Y  +I G C     +   ++L +M+++   PDV+
Sbjct: 260 KDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVV 319

Query: 181 SFNSIIGELCKKGKWNEAIDLLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEM 240
           +F+++I    K+GK  EA +L ++M +RG SPD V+Y +L DG C+  QL KA  +LD M
Sbjct: 320 AFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLM 379

Query: 241 IFKGYVPRSESINKLVDGLCQ 262
           + KG  P   + N L++G C+
Sbjct: 380 VSKGCGPNIRTFNILINGYCK 399

[Close]

BLAST of MS021217 vs. ExPASy Swiss-Prot
Match: Q9FIT7 (Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g61990 PE=2 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 6.6e-45
Identity = 100/295 (33.90%), Postives = 156/295 (52.88%), Query Frame = 0


Query: 1   PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKL 60
           PD   +N LI         D+A     EM + G+ PN  T+G  I G    S+   A K 
Sbjct: 485 PDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKY 544

Query: 61  KEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEMVTNKVKMDSAIYSTLISALF 120
            ++M R CG+LPN  +   LI  +C  G++I A      MV   +  D+  Y+ L++ LF
Sbjct: 545 VKEM-RECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLF 604

Query: 121 KHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVI 180
           K+ + ++  +I  EMR  G  PD  +Y  +I+G  K  +++ A  + DEMVE+G  P+VI
Sbjct: 605 KNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVI 664

Query: 181 SFNSIIGELCKKGKWNEAIDLLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEM 240
            +N ++G  C+ G+  +A +LL++M  +G  P+ V+Y T+ DG C++  L +A  + DEM
Sbjct: 665 IYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEM 724

Query: 241 IFKGYVPRSESINKLVDGLCQECDVELLWMVLDSLGRGNAMNMDTWARVIALVCK 296
             KG VP S     LVDG C+  DVE    +  +  +G A +   +  +I  V K
Sbjct: 725 KLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFK 778

[Close]

BLAST of MS021217 vs. ExPASy Swiss-Prot
Match: Q0WKV3 (Pentatricopeptide repeat-containing protein At1g12300, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g12300 PE=2 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 6.6e-45
Identity = 90/261 (34.48%), Postives = 144/261 (55.17%), Query Frame = 0


Query: 1   PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKL 60
           P+  TF+ LI+   L G   +A EL D M + G  P+++T  TL+ GL L+ K  EA+ L
Sbjct: 156 PNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLL 215

Query: 61  KEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEMVTNKVKMDSAIYSTLISALF 120
            + MV   G  PNA  Y  ++   C  G+  LA EL  +M    +K+D+  YS +I  L 
Sbjct: 216 IDKMVEY-GCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLC 275

Query: 121 KHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVI 180
           KHG  +   ++  EM   G   + +TYN +I G C     +   ++L +M+++   P+V+
Sbjct: 276 KHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVV 335

Query: 181 SFNSIIGELCKKGKWNEAIDLLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEM 240
           +F+ +I    K+GK  EA +L ++M  RG +PD ++Y +L DG C+   L KA  ++D M
Sbjct: 336 TFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLM 395

Query: 241 IFKGYVPRSESINKLVDGLCQ 262
           + KG  P   + N L++G C+
Sbjct: 396 VSKGCDPNIRTFNILINGYCK 415

[Close]

BLAST of MS021217 vs. ExPASy TrEMBL
Match: A0A6J1BRW9 (putative pentatricopeptide repeat-containing protein At1g53330 OS=Momordica charantia OX=3673 GN=LOC111004838 PE=4 SV=1)

HSP 1 Score: 611.3 bits (1575), Expect = 2.1e-171
Identity = 293/295 (99.32%), Postives = 295/295 (100.00%), Query Frame = 0


Query: 1   PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKL 60
           PDACTFNILIHAAYLCGNSDDAWE+FDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKL
Sbjct: 150 PDACTFNILIHAAYLCGNSDDAWEVFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKL 209

Query: 61  KEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEMVTNKVKMDSAIYSTLISALF 120
           KEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEMVT+KVKMDSAIYSTLISALF
Sbjct: 210 KEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEMVTSKVKMDSAIYSTLISALF 269

Query: 121 KHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVI 180
           KHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVI
Sbjct: 270 KHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVI 329

Query: 181 SFNSIIGELCKKGKWNEAIDLLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEM 240
           SFNSIIGELCKKGKWNEAIDLLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEM
Sbjct: 330 SFNSIIGELCKKGKWNEAIDLLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEM 389

Query: 241 IFKGYVPRSESINKLVDGLCQECDVELLWMVLDSLGRGNAMNMDTWARVIALVCK 296
           IFKGYVPRSESINKLVDGLCQECDVELLWMVLDSLGRGNAMNMDTWARVIALVCK
Sbjct: 390 IFKGYVPRSESINKLVDGLCQECDVELLWMVLDSLGRGNAMNMDTWARVIALVCK 444

[Close]

BLAST of MS021217 vs. ExPASy TrEMBL
Match: A0A6J1J467 (putative pentatricopeptide repeat-containing protein At1g53330 OS=Cucurbita maxima OX=3661 GN=LOC111481084 PE=4 SV=1)

HSP 1 Score: 519.2 bits (1336), Expect = 1.1e-143
Identity = 247/295 (83.73%), Postives = 271/295 (91.86%), Query Frame = 0


Query: 1   PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKL 60
           PDACTFNILIHAA LCG+ DDAWE+FDEM KRG+ PNVVTFGTLIYGLSLNSKL EAL+L
Sbjct: 150 PDACTFNILIHAACLCGDLDDAWEVFDEMPKRGVKPNVVTFGTLIYGLSLNSKLDEALRL 209

Query: 61  KEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEMVTNKVKMDSAIYSTLISALF 120
           KEDMVRV  ILPNASIYATLIKGFCGIG+L LAF+LKEEMVTNKVK+DSAIYST ISALF
Sbjct: 210 KEDMVRVYRILPNASIYATLIKGFCGIGDLNLAFKLKEEMVTNKVKLDSAIYSTFISALF 269

Query: 121 KHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVI 180
           KHGRKEEV +IL EM ENGCKPDTVTYN MI+G CKENDLESA+RVLDEMV+KGCKPDVI
Sbjct: 270 KHGRKEEVPEILAEMGENGCKPDTVTYNTMINGQCKENDLESAYRVLDEMVKKGCKPDVI 329

Query: 181 SFNSIIGELCKKGKWNEAIDLLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEM 240
           SFN+I+  LCK+GKW++A+DLL DMPRRGCSPDVVSYRTLFDGLCE MQLQ+ATSILDEM
Sbjct: 330 SFNTIMERLCKEGKWDKAMDLLADMPRRGCSPDVVSYRTLFDGLCEMMQLQEATSILDEM 389

Query: 241 IFKGYVPRSESINKLVDGLCQECDVELLWMVLDSLGRGNAMNMDTWARVIALVCK 296
           IFKGYVPRSESINKL+D LCQE ++ELLWMV +SLGRGN MN+D WARV+A VCK
Sbjct: 390 IFKGYVPRSESINKLIDRLCQESNMELLWMVANSLGRGNVMNVDIWARVVAFVCK 444

[Close]

BLAST of MS021217 vs. ExPASy TrEMBL
Match: A0A6J1FLC2 (LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g53330 OS=Cucurbita moschata OX=3662 GN=LOC111446799 PE=4 SV=1)

HSP 1 Score: 519.2 bits (1336), Expect = 1.1e-143
Identity = 248/295 (84.07%), Postives = 271/295 (91.86%), Query Frame = 0


Query: 1   PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKL 60
           PDACTFNILIHAA LCG+ DDAWE+FDEM KRG+ PNVVTFGTLIYGLSLNSKL EAL+L
Sbjct: 168 PDACTFNILIHAACLCGDLDDAWEVFDEMPKRGVKPNVVTFGTLIYGLSLNSKLDEALRL 227

Query: 61  KEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEMVTNKVKMDSAIYSTLISALF 120
           KEDMVRV  ILPNASIYATLIKGFCG G+L LAF+LKEEMVTNKVK+DSAIYST ISALF
Sbjct: 228 KEDMVRVYRILPNASIYATLIKGFCGSGDLNLAFKLKEEMVTNKVKLDSAIYSTFISALF 287

Query: 121 KHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVI 180
           KHGRKEEV  IL EM ENGCKPDTVTYNAMI+G CKENDLESA+RVLDEMV+KGCKPDVI
Sbjct: 288 KHGRKEEVPGILAEMGENGCKPDTVTYNAMINGQCKENDLESAYRVLDEMVKKGCKPDVI 347

Query: 181 SFNSIIGELCKKGKWNEAIDLLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEM 240
           SFN+I+G LCK+GKW++A+DLL DMPRRGCSPDVVSYRTLFDGLCE MQLQ+ATSILDEM
Sbjct: 348 SFNTIMGRLCKEGKWDKAMDLLADMPRRGCSPDVVSYRTLFDGLCEMMQLQEATSILDEM 407

Query: 241 IFKGYVPRSESINKLVDGLCQECDVELLWMVLDSLGRGNAMNMDTWARVIALVCK 296
           IFKGYVPRSESINKLVD LCQE ++ELLWMV++SL RGN MN+D WARV+A VCK
Sbjct: 408 IFKGYVPRSESINKLVDRLCQESNMELLWMVVNSLARGNVMNVDIWARVVAFVCK 462

[Close]

BLAST of MS021217 vs. ExPASy TrEMBL
Match: A0A5A7VBA5 (Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G004190 PE=4 SV=1)

HSP 1 Score: 508.4 bits (1308), Expect = 1.9e-140
Identity = 243/295 (82.37%), Postives = 268/295 (90.85%), Query Frame = 0


Query: 1   PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKL 60
           PDACTFNILIHAA LCG+ D  W +FDEMRKRG+ PNVVTFGTLIYGLSLNSKLKEAL+L
Sbjct: 168 PDACTFNILIHAACLCGDLDAVWGVFDEMRKRGVQPNVVTFGTLIYGLSLNSKLKEALRL 227

Query: 61  KEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEMVTNKVKMDSAIYSTLISALF 120
           KEDMVRV  I PNASIY TLIKGFCG+GEL  AF+LKEEMVT+KVK+DS IYSTLISALF
Sbjct: 228 KEDMVRVYMIKPNASIYTTLIKGFCGVGELNFAFKLKEEMVTSKVKLDSKIYSTLISALF 287

Query: 121 KHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVI 180
           KHGRKEEV DIL EM ENGCKPDT TYNAMI+GHCKENDLESA RV+DEMVEKGCKPDVI
Sbjct: 288 KHGRKEEVSDILREMGENGCKPDTATYNAMINGHCKENDLESANRVVDEMVEKGCKPDVI 347

Query: 181 SFNSIIGELCKKGKWNEAIDLLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEM 240
           SFN+IIG LCK+GK ++A+DLLEDMPRRGC PDV+SYR +FDGLCE MQL++ATSILDEM
Sbjct: 348 SFNTIIGGLCKEGKLDKAMDLLEDMPRRGCPPDVLSYRIVFDGLCEMMQLKEATSILDEM 407

Query: 241 IFKGYVPRSESINKLVDGLCQECDVELLWMVLDSLGRGNAMNMDTWARVIALVCK 296
           IFKGYVPR+ESINKLVD LCQEC++ELLWMVL+SLGRGN MNMDTWARV+A + K
Sbjct: 408 IFKGYVPRNESINKLVDRLCQECNMELLWMVLNSLGRGNRMNMDTWARVVAFLYK 462

[Close]

BLAST of MS021217 vs. ExPASy TrEMBL
Match: A0A1S3BT71 (putative pentatricopeptide repeat-containing protein At1g53330 OS=Cucumis melo OX=3656 GN=LOC103493464 PE=4 SV=1)

HSP 1 Score: 508.4 bits (1308), Expect = 1.9e-140
Identity = 243/295 (82.37%), Postives = 268/295 (90.85%), Query Frame = 0


Query: 1   PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKL 60
           PDACTFNILIHAA LCG+ D  W +FDEMRKRG+ PNVVTFGTLIYGLSLNSKLKEAL+L
Sbjct: 216 PDACTFNILIHAACLCGDLDAVWGVFDEMRKRGVQPNVVTFGTLIYGLSLNSKLKEALRL 275

Query: 61  KEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEMVTNKVKMDSAIYSTLISALF 120
           KEDMVRV  I PNASIY TLIKGFCG+GEL  AF+LKEEMVT+KVK+DS IYSTLISALF
Sbjct: 276 KEDMVRVYMIKPNASIYTTLIKGFCGVGELNFAFKLKEEMVTSKVKLDSKIYSTLISALF 335

Query: 121 KHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVI 180
           KHGRKEEV DIL EM ENGCKPDT TYNAMI+GHCKENDLESA RV+DEMVEKGCKPDVI
Sbjct: 336 KHGRKEEVSDILREMGENGCKPDTATYNAMINGHCKENDLESANRVVDEMVEKGCKPDVI 395

Query: 181 SFNSIIGELCKKGKWNEAIDLLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEM 240
           SFN+IIG LCK+GK ++A+DLLEDMPRRGC PDV+SYR +FDGLCE MQL++ATSILDEM
Sbjct: 396 SFNTIIGGLCKEGKLDKAMDLLEDMPRRGCPPDVLSYRIVFDGLCEMMQLKEATSILDEM 455

Query: 241 IFKGYVPRSESINKLVDGLCQECDVELLWMVLDSLGRGNAMNMDTWARVIALVCK 296
           IFKGYVPR+ESINKLVD LCQEC++ELLWMVL+SLGRGN MNMDTWARV+A + K
Sbjct: 456 IFKGYVPRNESINKLVDRLCQECNMELLWMVLNSLGRGNRMNMDTWARVVAFLYK 510

[Close]

BLAST of MS021217 vs. TAIR 10
Match: AT1G53330.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 351.7 bits (901), Expect = 5.8e-97
Identity = 171/295 (57.97%), Postives = 212/295 (71.86%), Query Frame = 0


Query: 1   PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKL 60
           PDACT+NILIH     G  DDA +LFDEM K+ + P  VTFGTLI+GL  +S++KEALK+
Sbjct: 150 PDACTYNILIHGCSQSGCFDDALKLFDEMVKKKVKPTGVTFGTLIHGLCKDSRVKEALKM 209

Query: 61  KEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEMVTNKVKMDSAIYSTLISALF 120
           K DM++V G+ P   IYA+LIK  C IGEL  AF+LK+E    K+K+D+AIYSTLIS+L 
Sbjct: 210 KHDMLKVYGVRPTVHIYASLIKALCQIGELSFAFKLKDEAYEGKIKVDAAIYSTLISSLI 269

Query: 121 KHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVI 180
           K GR  EV  IL EM E GCKPDTVTYN +I+G C END ESA RVLDEMVEKG KPDVI
Sbjct: 270 KAGRSNEVSMILEEMSEKGCKPDTVTYNVLINGFCVENDSESANRVLDEMVEKGLKPDVI 329

Query: 181 SFNSIIGELCKKGKWNEAIDLLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEM 240
           S+N I+G   +  KW EA  L EDMPRRGCSPD +SYR +FDGLCE +Q ++A  ILDEM
Sbjct: 330 SYNMILGVFFRIKKWEEATYLFEDMPRRGCSPDTLSYRIVFDGLCEGLQFEEAAVILDEM 389

Query: 241 IFKGYVPRSESINKLVDGLCQECDVELLWMVLDSLGRGNAMNMDTWARVIALVCK 296
           +FKGY PR + +   +  LC+   +E+L  V+ SL RG A + D W+ +I  +CK
Sbjct: 390 LFKGYKPRRDRLEGFLQKLCESGKLEILSKVISSLHRGIAGDADVWSVMIPTMCK 444

[Close]

BLAST of MS021217 vs. TAIR 10
Match: AT1G09900.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 188.3 bits (477), Expect = 8.6e-48
Identity = 91/266 (34.21%), Postives = 150/266 (56.39%), Query Frame = 0


Query: 1   PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKL 60
           PD  T+ ILI A         A +L DEMR RG  P+VVT+  L+ G+    +L EA+K 
Sbjct: 237 PDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKF 296

Query: 61  KEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEMVTNKVKMDSAIYSTLISALF 120
             DM    G  PN   +  +++  C  G  + A +L  +M+          ++ LI+ L 
Sbjct: 297 LNDMPS-SGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLC 356

Query: 121 KHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVI 180
           + G      DIL +M ++GC+P++++YN ++ G CKE  ++ A   L+ MV +GC PD++
Sbjct: 357 RKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIV 416

Query: 181 SFNSIIGELCKKGKWNEAIDLLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEM 240
           ++N+++  LCK GK  +A+++L  +  +GCSP +++Y T+ DGL +  +  KA  +LDEM
Sbjct: 417 TYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEM 476

Query: 241 IFKGYVPRSESINKLVDGLCQECDVE 267
             K   P + + + LV GL +E  V+
Sbjct: 477 RAKDLKPDTITYSSLVGGLSREGKVD 501

[Close]

BLAST of MS021217 vs. TAIR 10
Match: AT1G12620.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 187.2 bits (474), Expect = 1.9e-47
Identity = 95/261 (36.40%), Postives = 145/261 (55.56%), Query Frame = 0


Query: 1   PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKL 60
           PD  TF+ LI+   L G   +A EL D M + G  P ++T   L+ GL LN K+ +A+ L
Sbjct: 140 PDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLL 199

Query: 61  KEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEMVTNKVKMDSAIYSTLISALF 120
            + MV   G  PN   Y  ++K  C  G+  LA EL  +M   K+K+D+  YS +I  L 
Sbjct: 200 IDRMVET-GFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLC 259

Query: 121 KHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVI 180
           K G  +   ++  EM   G K D + Y  +I G C     +   ++L +M+++   PDV+
Sbjct: 260 KDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVV 319

Query: 181 SFNSIIGELCKKGKWNEAIDLLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEM 240
           +F+++I    K+GK  EA +L ++M +RG SPD V+Y +L DG C+  QL KA  +LD M
Sbjct: 320 AFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLM 379

Query: 241 IFKGYVPRSESINKLVDGLCQ 262
           + KG  P   + N L++G C+
Sbjct: 380 VSKGCGPNIRTFNILINGYCK 399

[Close]

BLAST of MS021217 vs. TAIR 10
Match: AT1G12300.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 182.6 bits (462), Expect = 4.7e-46
Identity = 90/261 (34.48%), Postives = 144/261 (55.17%), Query Frame = 0


Query: 1   PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKL 60
           P+  TF+ LI+   L G   +A EL D M + G  P+++T  TL+ GL L+ K  EA+ L
Sbjct: 156 PNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLL 215

Query: 61  KEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEMVTNKVKMDSAIYSTLISALF 120
            + MV   G  PNA  Y  ++   C  G+  LA EL  +M    +K+D+  YS +I  L 
Sbjct: 216 IDKMVEY-GCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLC 275

Query: 121 KHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVI 180
           KHG  +   ++  EM   G   + +TYN +I G C     +   ++L +M+++   P+V+
Sbjct: 276 KHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVV 335

Query: 181 SFNSIIGELCKKGKWNEAIDLLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEM 240
           +F+ +I    K+GK  EA +L ++M  RG +PD ++Y +L DG C+   L KA  ++D M
Sbjct: 336 TFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLM 395

Query: 241 IFKGYVPRSESINKLVDGLCQ 262
           + KG  P   + N L++G C+
Sbjct: 396 VSKGCDPNIRTFNILINGYCK 415

[Close]

BLAST of MS021217 vs. TAIR 10
Match: AT5G61990.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 182.6 bits (462), Expect = 4.7e-46
Identity = 100/295 (33.90%), Postives = 156/295 (52.88%), Query Frame = 0


Query: 1   PDACTFNILIHAAYLCGNSDDAWELFDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKL 60
           PD   +N LI         D+A     EM + G+ PN  T+G  I G    S+   A K 
Sbjct: 485 PDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKY 544

Query: 61  KEDMVRVCGILPNASIYATLIKGFCGIGELILAFELKEEMVTNKVKMDSAIYSTLISALF 120
            ++M R CG+LPN  +   LI  +C  G++I A      MV   +  D+  Y+ L++ LF
Sbjct: 545 VKEM-RECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLF 604

Query: 121 KHGRKEEVCDILGEMRENGCKPDTVTYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVI 180
           K+ + ++  +I  EMR  G  PD  +Y  +I+G  K  +++ A  + DEMVE+G  P+VI
Sbjct: 605 KNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVI 664

Query: 181 SFNSIIGELCKKGKWNEAIDLLEDMPRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEM 240
            +N ++G  C+ G+  +A +LL++M  +G  P+ V+Y T+ DG C++  L +A  + DEM
Sbjct: 665 IYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEM 724

Query: 241 IFKGYVPRSESINKLVDGLCQECDVELLWMVLDSLGRGNAMNMDTWARVIALVCK 296
             KG VP S     LVDG C+  DVE    +  +  +G A +   +  +I  V K
Sbjct: 725 KLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFK 778

The following BLAST results are available for this feature:

BLAST of MS021217 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022131752.1	4.4e-171	99.32	putative pentatricopeptide repeat-containing protein At1g53330 [Momordica charan...	[more]
XP_023523314.1	6.4e-146	84.75	putative pentatricopeptide repeat-containing protein At1g53330 [Cucurbita pepo s...	[more]
KAG6607949.1	1.3e-143	84.07	putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyros...	[more]
KAG7037464.1	1.7e-143	84.07	putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyros...	[more]
XP_022941521.1	2.3e-143	84.07	LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g53...	[more]

BLAST of MS021217 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9MAG8	8.2e-96	57.97	Putative pentatricopeptide repeat-containing protein At1g53330 OS=Arabidopsis th...	[more]
Q3EDF8	1.2e-46	34.21	Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana OX...	[more]
Q9ASZ8	2.7e-46	36.40	Pentatricopeptide repeat-containing protein At1g12620 OS=Arabidopsis thaliana OX...	[more]
Q9FIT7	6.6e-45	33.90	Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidop...	[more]
Q0WKV3	6.6e-45	34.48	Pentatricopeptide repeat-containing protein At1g12300, mitochondrial OS=Arabidop...	[more]

BLAST of MS021217 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BRW9	2.1e-171	99.32	putative pentatricopeptide repeat-containing protein At1g53330 OS=Momordica char...	[more]
A0A6J1J467	1.1e-143	83.73	putative pentatricopeptide repeat-containing protein At1g53330 OS=Cucurbita maxi...	[more]
A0A6J1FLC2	1.1e-143	84.07	LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g53...	[more]
A0A5A7VBA5	1.9e-140	82.37	Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa...	[more]
A0A1S3BT71	1.9e-140	82.37	putative pentatricopeptide repeat-containing protein At1g53330 OS=Cucumis melo O...	[more]

BLAST of MS021217 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G53330.1	5.8e-97	57.97	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G09900.1	8.6e-48	34.21	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT1G12620.1	1.9e-47	36.40	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G12300.1	4.7e-46	34.48	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G61990.1	4.7e-46	33.90	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF12854	PPR_1	coord: 208..240 e-value: 1.3E-7 score: 31.2 coord: 69..101 e-value: 2.2E-6 score: 27.3
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 39..74 e-value: 1.2E-4 score: 20.0 coord: 215..247 e-value: 4.1E-5 score: 21.5 coord: 76..108 e-value: 2.8E-4 score: 18.9 coord: 145..179 e-value: 1.6E-13 score: 47.9 coord: 111..144 e-value: 7.7E-10 score: 36.3 coord: 180..214 e-value: 1.2E-9 score: 35.7 coord: 4..38 e-value: 5.6E-9 score: 33.6
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 1..48 e-value: 3.3E-15 score: 56.0 coord: 142..190 e-value: 1.8E-19 score: 69.6
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 111..140 e-value: 8.8E-7 score: 28.8
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 2..36 score: 12.517862
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 73..107 score: 9.065053
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 143..177 score: 14.885503
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 108..142 score: 12.386327
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 213..247 score: 10.840783
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 178..212 score: 13.493418
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 1..88 e-value: 2.5E-24 score: 87.6 coord: 89..191 e-value: 6.3E-34 score: 118.9 coord: 192..295 e-value: 4.0E-20 score: 73.9
None	No IPR available	PANTHER	PTHR47933	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL	coord: 1..295
None	No IPR available	PANTHER	PTHR47933:SF24	OS05G0207200 PROTEIN	coord: 1..295

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS021217.1	MS021217.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding