MS021112 (gene) Bitter gourd (TR) v1

Overview


Name	MS021112
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Cytochrome C assembly protein
Location	scaffold290: 1337324 .. 1337566 (+)
RNA-Seq Expression	MS021112
Synteny	MS021112

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCTTTCGTTATTACAACCTTCTTTTTTGATGTCAAAGACCAGAAGCTATGCACAAATTCTCATTGGATCTCGGTTGTTCTTAACAGCGATGACTATTCATTTAAGTCTTCGGGTAGCACCACTAGATCTTCAACAAGGTGGAAATTCTCATATTCTGTATGTACATGTTCCTGCGACTCGGATGAGTATTCTCGTTTATATCGCTACGGCTATAAACACTTTCTTGTTCCTATTAACA

mRNA sequence

ATGTCTCTTTCGTTATTACAACCTTCTTTTTTGATGTCAAAGACCAGAAGCTATGCACAAATTCTCATTGGATCTCGGTTGTTCTTAACAGCGATGACTATTCATTTAAGTCTTCGGGTAGCACCACTAGATCTTCAACAAGGTGGAAATTCTCATATTCTGTATGTACATGTTCCTGCGACTCGGATGAGTATTCTCGTTTATATCGCTACGGCTATAAACACTTTCTTGTTCCTATTAACA

Coding sequence (CDS)

ATGTCTCTTTCGTTATTACAACCTTCTTTTTTGATGTCAAAGACCAGAAGCTATGCACAAATTCTCATTGGATCTCGGTTGTTCTTAACAGCGATGACTATTCATTTAAGTCTTCGGGTAGCACCACTAGATCTTCAACAAGGTGGAAATTCTCATATTCTGTATGTACATGTTCCTGCGACTCGGATGAGTATTCTCGTTTATATCGCTACGGCTATAAACACTTTCTTGTTCCTATTAACA

Protein sequence

MSLSLLQPSFLMSKTRSYAQILIGSRLFLTAMTIHLSLRVAPLDLQQGGNSHILYVHVPATRMSILVYIATAINTFLFLLT

Homology

[Close]

BLAST of MS021112 vs. NCBI nr
Match: YP_009913608.1 (cytochrome c biogenesis C [Luffa acutangula] >QLJ93005.1 cytochrome c biogenesis C [Luffa acutangula])

HSP 1 Score: 142.9 bits (359), Expect = 1.2e-30
Identity = 78/81 (96.30%), Postives = 78/81 (96.30%), Query Frame = 0


Query: 1  MSLSLLQPSFLMSKTRSYAQILIGSRLFLTAMTIHLSLRVAPLDLQQGGNSHILYVHVPA 60
          MSLSLLQPSFLMSKTRSYAQILIGSRLFLTAM IHLSLRVAPLDLQQGGNS ILYVHVPA
Sbjct: 1  MSLSLLQPSFLMSKTRSYAQILIGSRLFLTAMAIHLSLRVAPLDLQQGGNSRILYVHVPA 60

Query: 61 TRMSILVYIATAINTFLFLLT 82
           RMSILVYIATAINTFLFLLT
Sbjct: 61 ARMSILVYIATAINTFLFLLT 81

[Close]

BLAST of MS021112 vs. NCBI nr
Match: ALE29214.1 (cytochrome c biogenesis C [Heuchera parviflora var. saurensis])

HSP 1 Score: 142.9 bits (359), Expect = 1.2e-30
Identity = 78/81 (96.30%), Postives = 78/81 (96.30%), Query Frame = 0


Query: 1  MSLSLLQPSFLMSKTRSYAQILIGSRLFLTAMTIHLSLRVAPLDLQQGGNSHILYVHVPA 60
          MSLSLLQPSFLMSKTRSYAQILIGSRLFLTAM IHLSLRVAPLDLQQGGNS ILYVHVPA
Sbjct: 1  MSLSLLQPSFLMSKTRSYAQILIGSRLFLTAMAIHLSLRVAPLDLQQGGNSRILYVHVPA 60

Query: 61 TRMSILVYIATAINTFLFLLT 82
           RMSILVYIATAINTFLFLLT
Sbjct: 61 ARMSILVYIATAINTFLFLLT 81

[Close]

BLAST of MS021112 vs. NCBI nr
Match: YP_004849340.1 (cytochrome c biogenesis C [Cucumis sativus] >ADZ10767.1 cytochrome c biogenesis C [Cucumis sativus])

HSP 1 Score: 142.9 bits (359), Expect = 1.2e-30
Identity = 78/81 (96.30%), Postives = 78/81 (96.30%), Query Frame = 0


Query: 1  MSLSLLQPSFLMSKTRSYAQILIGSRLFLTAMTIHLSLRVAPLDLQQGGNSHILYVHVPA 60
          MSLSLLQPSFLMSKTRSYAQILIGSRLFLTAM IHLSLRVAPLDLQQGGNS ILYVHVPA
Sbjct: 1  MSLSLLQPSFLMSKTRSYAQILIGSRLFLTAMAIHLSLRVAPLDLQQGGNSRILYVHVPA 60

Query: 61 TRMSILVYIATAINTFLFLLT 82
           RMSILVYIATAINTFLFLLT
Sbjct: 61 ARMSILVYIATAINTFLFLLT 81

[Close]

BLAST of MS021112 vs. NCBI nr
Match: QVD39111.1 (cytochrome c biogenesis C [Gleditsia sinensis] >QXE45553.1 cytochrome c biogenesis C [Ceratonia siliqua])

HSP 1 Score: 142.9 bits (359), Expect = 1.2e-30
Identity = 78/81 (96.30%), Postives = 78/81 (96.30%), Query Frame = 0


Query: 1  MSLSLLQPSFLMSKTRSYAQILIGSRLFLTAMTIHLSLRVAPLDLQQGGNSHILYVHVPA 60
          MSLSLLQPSFLMSKTRSYAQILIGSRLFLTAM IHLSLRVAPLDLQQGGNS ILYVHVPA
Sbjct: 1  MSLSLLQPSFLMSKTRSYAQILIGSRLFLTAMAIHLSLRVAPLDLQQGGNSRILYVHVPA 60

Query: 61 TRMSILVYIATAINTFLFLLT 82
           RMSILVYIATAINTFLFLLT
Sbjct: 61 ARMSILVYIATAINTFLFLLT 81

[Close]

BLAST of MS021112 vs. NCBI nr
Match: YP_009498146.1 (cytochrome c biogenesis C [Senna tora] >AWW13948.1 cytochrome c biogenesis C [Senna tora])

HSP 1 Score: 142.1 bits (357), Expect = 2.1e-30
Identity = 77/81 (95.06%), Postives = 78/81 (96.30%), Query Frame = 0


Query: 1  MSLSLLQPSFLMSKTRSYAQILIGSRLFLTAMTIHLSLRVAPLDLQQGGNSHILYVHVPA 60
          MSLSLLQPSFLMSKTRSYAQI+IGSRLFLTAM IHLSLRVAPLDLQQGGNS ILYVHVPA
Sbjct: 1  MSLSLLQPSFLMSKTRSYAQIIIGSRLFLTAMAIHLSLRVAPLDLQQGGNSRILYVHVPA 60

Query: 61 TRMSILVYIATAINTFLFLLT 82
           RMSILVYIATAINTFLFLLT
Sbjct: 61 ARMSILVYIATAINTFLFLLT 81

[Close]

BLAST of MS021112 vs. ExPASy Swiss-Prot
Match: P92527 (Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Arabidopsis thaliana OX=3702 GN=CCMC PE=2 SV=4)

HSP 1 Score: 126.7 bits (317), Expect = 1.2e-28
Identity = 70/81 (86.42%), Postives = 73/81 (90.12%), Query Frame = 0


Query: 1  MSLSLLQPSFLMSKTRSYAQILIGSRLFLTAMTIHLSLRVAPLDLQQGGNSHILYVHVPA 60
          MS+SLLQPSFLMSKTRSYAQILIGS LFLTAM I+LSL VAPLD QQGGNS ILYVHVP 
Sbjct: 1  MSVSLLQPSFLMSKTRSYAQILIGSWLFLTAMAIYLSLGVAPLDFQQGGNSRILYVHVPV 60

Query: 61 TRMSILVYIATAINTFLFLLT 82
            MSI+VYIATAINTFLFLLT
Sbjct: 61 AWMSIIVYIATAINTFLFLLT 81

[Close]

BLAST of MS021112 vs. ExPASy Swiss-Prot
Match: P38453 (Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Marchantia polymorpha OX=3197 GN=CCMC PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 8.8e-16
Identity = 49/81 (60.49%), Postives = 59/81 (72.84%), Query Frame = 0


Query: 1  MSLSLLQPSFLMSKTRSYAQILIGSRLFLTAMTIHLSLRVAPLDLQQGGNSHILYVHVPA 60
          M + LL+P F M  +  YAQILIG   FLTAM I+LS+ VAP D QQG N  I+YVHVPA
Sbjct: 1  MYVPLLRPFFFMCCSFRYAQILIGFCWFLTAMAIYLSIWVAPSDFQQGENYRIIYVHVPA 60

Query: 61 TRMSILVYIATAINTFLFLLT 82
            MS+L+YIA AI++ LFLLT
Sbjct: 61 AWMSLLIYIAMAISSVLFLLT 81

[Close]

BLAST of MS021112 vs. ExPASy TrEMBL
Match: A0A7D6BYD9 (Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Luffa acutangula OX=56866 GN=ccmC PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 5.9e-31
Identity = 78/81 (96.30%), Postives = 78/81 (96.30%), Query Frame = 0


Query: 1  MSLSLLQPSFLMSKTRSYAQILIGSRLFLTAMTIHLSLRVAPLDLQQGGNSHILYVHVPA 60
          MSLSLLQPSFLMSKTRSYAQILIGSRLFLTAM IHLSLRVAPLDLQQGGNS ILYVHVPA
Sbjct: 1  MSLSLLQPSFLMSKTRSYAQILIGSRLFLTAMAIHLSLRVAPLDLQQGGNSRILYVHVPA 60

Query: 61 TRMSILVYIATAINTFLFLLT 82
           RMSILVYIATAINTFLFLLT
Sbjct: 61 ARMSILVYIATAINTFLFLLT 81

[Close]

BLAST of MS021112 vs. ExPASy TrEMBL
Match: G3EIZ2 (Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Cucumis sativus OX=3659 GN=ccmC PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 5.9e-31
Identity = 78/81 (96.30%), Postives = 78/81 (96.30%), Query Frame = 0


Query: 1  MSLSLLQPSFLMSKTRSYAQILIGSRLFLTAMTIHLSLRVAPLDLQQGGNSHILYVHVPA 60
          MSLSLLQPSFLMSKTRSYAQILIGSRLFLTAM IHLSLRVAPLDLQQGGNS ILYVHVPA
Sbjct: 1  MSLSLLQPSFLMSKTRSYAQILIGSRLFLTAMAIHLSLRVAPLDLQQGGNSRILYVHVPA 60

Query: 61 TRMSILVYIATAINTFLFLLT 82
           RMSILVYIATAINTFLFLLT
Sbjct: 61 ARMSILVYIATAINTFLFLLT 81

[Close]

BLAST of MS021112 vs. ExPASy TrEMBL
Match: A0A0M4N316 (Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Heuchera parviflora var. saurensis OX=1708480 GN=ccmC PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 5.9e-31
Identity = 78/81 (96.30%), Postives = 78/81 (96.30%), Query Frame = 0


Query: 1  MSLSLLQPSFLMSKTRSYAQILIGSRLFLTAMTIHLSLRVAPLDLQQGGNSHILYVHVPA 60
          MSLSLLQPSFLMSKTRSYAQILIGSRLFLTAM IHLSLRVAPLDLQQGGNS ILYVHVPA
Sbjct: 1  MSLSLLQPSFLMSKTRSYAQILIGSRLFLTAMAIHLSLRVAPLDLQQGGNSRILYVHVPA 60

Query: 61 TRMSILVYIATAINTFLFLLT 82
           RMSILVYIATAINTFLFLLT
Sbjct: 61 ARMSILVYIATAINTFLFLLT 81

[Close]

BLAST of MS021112 vs. ExPASy TrEMBL
Match: A0A5J6NGL6 (Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Cercis canadensis OX=49801 GN=ccmC PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.0e-30
Identity = 77/81 (95.06%), Postives = 78/81 (96.30%), Query Frame = 0


Query: 1  MSLSLLQPSFLMSKTRSYAQILIGSRLFLTAMTIHLSLRVAPLDLQQGGNSHILYVHVPA 60
          MSLSLLQPSFLMSKTRSYAQI+IGSRLFLTAM IHLSLRVAPLDLQQGGNS ILYVHVPA
Sbjct: 1  MSLSLLQPSFLMSKTRSYAQIIIGSRLFLTAMAIHLSLRVAPLDLQQGGNSRILYVHVPA 60

Query: 61 TRMSILVYIATAINTFLFLLT 82
           RMSILVYIATAINTFLFLLT
Sbjct: 61 ARMSILVYIATAINTFLFLLT 81

[Close]

BLAST of MS021112 vs. ExPASy TrEMBL
Match: A0A2Z4HGQ1 (Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Senna occidentalis OX=126820 GN=ccmC PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.0e-30
Identity = 77/81 (95.06%), Postives = 78/81 (96.30%), Query Frame = 0


Query: 1  MSLSLLQPSFLMSKTRSYAQILIGSRLFLTAMTIHLSLRVAPLDLQQGGNSHILYVHVPA 60
          MSLSLLQPSFLMSKTRSYAQI+IGSRLFLTAM IHLSLRVAPLDLQQGGNS ILYVHVPA
Sbjct: 1  MSLSLLQPSFLMSKTRSYAQIIIGSRLFLTAMAIHLSLRVAPLDLQQGGNSRILYVHVPA 60

Query: 61 TRMSILVYIATAINTFLFLLT 82
           RMSILVYIATAINTFLFLLT
Sbjct: 61 ARMSILVYIATAINTFLFLLT 81

[Close]

BLAST of MS021112 vs. TAIR 10
Match: AT2G07771.2 (Cytochrome C assembly protein )

HSP 1 Score: 135.2 bits (339), Expect = 2.4e-32
Identity = 74/81 (91.36%), Postives = 76/81 (93.83%), Query Frame = 0


Query: 1  MSLSLLQPSFLMSKTRSYAQILIGSRLFLTAMTIHLSLRVAPLDLQQGGNSHILYVHVPA 60
          MS+SLLQPSFLMSKTRSYAQILIGS LFLTAM IHLSL VAPLDLQQGGNS ILYVHVPA
Sbjct: 1  MSVSLLQPSFLMSKTRSYAQILIGSWLFLTAMAIHLSLGVAPLDLQQGGNSRILYVHVPA 60

Query: 61 TRMSILVYIATAINTFLFLLT 82
           RMSI+VYIATAINTFLFLLT
Sbjct: 61 ARMSIIVYIATAINTFLFLLT 81

[Close]

BLAST of MS021112 vs. TAIR 10
Match: ATMG00900.1 (cytochrome C biogenesis 256 )

HSP 1 Score: 135.2 bits (339), Expect = 2.4e-32
Identity = 74/81 (91.36%), Postives = 76/81 (93.83%), Query Frame = 0


Query: 1  MSLSLLQPSFLMSKTRSYAQILIGSRLFLTAMTIHLSLRVAPLDLQQGGNSHILYVHVPA 60
          MS+SLLQPSFLMSKTRSYAQILIGS LFLTAM IHLSL VAPLDLQQGGNS ILYVHVPA
Sbjct: 1  MSVSLLQPSFLMSKTRSYAQILIGSWLFLTAMAIHLSLGVAPLDLQQGGNSRILYVHVPA 60

Query: 61 TRMSILVYIATAINTFLFLLT 82
           RMSI+VYIATAINTFLFLLT
Sbjct: 61 ARMSIIVYIATAINTFLFLLT 81

[Close]

BLAST of MS021112 vs. TAIR 10
Match: AT2G07681.1 (Cytochrome C assembly protein )

HSP 1 Score: 113.2 bits (282), Expect = 9.6e-26
Identity = 61/67 (91.04%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 15  TRSYAQILIGSRLFLTAMTIHLSLRVAPLDLQQGGNSHILYVHVPATRMSILVYIATAIN 74
           TRSYAQILIGS LFLTAM IHLSL VAPLDLQQGGNS ILYVHVPA RMSI+VYIATAIN
Sbjct: 395 TRSYAQILIGSWLFLTAMAIHLSLGVAPLDLQQGGNSRILYVHVPAARMSIIVYIATAIN 454

Query: 75  TFLFLLT 82
           TFLFLLT
Sbjct: 455 TFLFLLT 461

The following BLAST results are available for this feature:

BLAST of MS021112 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009913608.1	1.2e-30	96.30	cytochrome c biogenesis C [Luffa acutangula] >QLJ93005.1 cytochrome c biogenesis...	[more]
ALE29214.1	1.2e-30	96.30	cytochrome c biogenesis C [Heuchera parviflora var. saurensis]	[more]
YP_004849340.1	1.2e-30	96.30	cytochrome c biogenesis C [Cucumis sativus] >ADZ10767.1 cytochrome c biogenesis ...	[more]
QVD39111.1	1.2e-30	96.30	cytochrome c biogenesis C [Gleditsia sinensis] >QXE45553.1 cytochrome c biogenes...	[more]
YP_009498146.1	2.1e-30	95.06	cytochrome c biogenesis C [Senna tora] >AWW13948.1 cytochrome c biogenesis C [Se...	[more]

BLAST of MS021112 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P92527	1.2e-28	86.42	Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Arabidopsi...	[more]
P38453	8.8e-16	60.49	Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Marchantia...	[more]

BLAST of MS021112 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7D6BYD9	5.9e-31	96.30	Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Luffa acut...	[more]
G3EIZ2	5.9e-31	96.30	Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Cucumis sa...	[more]
A0A0M4N316	5.9e-31	96.30	Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Heuchera p...	[more]
A0A5J6NGL6	1.0e-30	95.06	Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Cercis can...	[more]
A0A2Z4HGQ1	1.0e-30	95.06	Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Senna occi...	[more]

BLAST of MS021112 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G07771.2	2.4e-32	91.36	Cytochrome C assembly protein	[more]
ATMG00900.1	2.4e-32	91.36	cytochrome C biogenesis 256	[more]
AT2G07681.1	9.6e-26	91.04	Cytochrome C assembly protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003557	Cytochrome c-type biogenesis protein CcmC	PRINTS	PR01386	CCMCBIOGNSIS	coord: 42..59 score: 62.22 coord: 59..79 score: 45.71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS021112.1	MS021112.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0017004	cytochrome complex assembly
biological_process	GO:0015886	heme transport
cellular_component	GO:0016020	membrane
molecular_function	GO:0015232	heme transmembrane transporter activity