MS021108 (gene) Bitter gourd (TR) v1

Overview


Name	MS021108
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold290: 1314722 .. 1315612 (+)
RNA-Seq Expression	MS021108
Synteny	MS021108

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTACATTCGCAAGTGGTACAGACCGGATCCTAACAGATTCAATCTCTCCAAATCGGCTAAACTCCTTGCCTAAAGCTTTTTTCTTCACTTTCAATGGCAAGTTCCCAACAAACACAGTTCTCAAAAGCTTGCTTTCATCATCAAATCCTTCCTTCGAAACCAACATCTCCGAAGGATCGTCCAGTGCTTTCCTCTTTTTCCCAGCAACATTGCCCCCTGAACCTTCCTCCCCATCCTCAGCTACCTCCGATGCACCATACTTCCTCGCTTCATACTCTCTCTCAAGTTCATCTCTCTTCCTCTTCTTCTTCTCTTTCATCAACTTCCCAACCTCACCGAGCTTACTGTCAGTCCTTTCGCCGGTCTTCGACCTAGGATTCAATTTCCTATTACTTTGTTCTTCTACCTTCAACGCTCCACTAAATTCAGGACTCGTTTCTTTAGTATCATTAATTTCAGAGCCCGAAGCAGAACCTTTTCTCTTGTTCTTCTTCAGTACTCCTAGCGATTGGGAACCCAACCCACCATTTTCTCCACCTTCCTCCTCGATAGCTCCATTACCCAAGTCGCGGCGGTCCCGATTCTTCTCCTTCCTCTTCGATTTCTTGATCTCCGACGAACTTTTGGAAGCCTCCTCAGCAGAACCCAAATCGTTTCCAGCCCTTTTCTCCTTGCCGTTCTTCAAACTCTTCACGTCATCAACAATATGGTCATTAGAACCGGCACCGGGAGTTTCTTCAGCAGCAGCGGCAGGAATGGAATCCGAATCCGCCGCCTGGTGTCTCCGGCGAAAAGGGTTGTCACTGGAGAAGATAGAAACGCCGCCGCTTTGTACTCCAACGTTGCCGAACAGAGTCTCGAAAACGCTGGAGGAAGCAGAAAGGGAA

mRNA sequence

ATGCTTACATTCGCAAGTGGTACAGACCGGATCCTAACAGATTCAATCTCTCCAAATCGGCTAAACTCCTTGCCTAAAGCTTTTTTCTTCACTTTCAATGGCAAGTTCCCAACAAACACAGTTCTCAAAAGCTTGCTTTCATCATCAAATCCTTCCTTCGAAACCAACATCTCCGAAGGATCGTCCAGTGCTTTCCTCTTTTTCCCAGCAACATTGCCCCCTGAACCTTCCTCCCCATCCTCAGCTACCTCCGATGCACCATACTTCCTCGCTTCATACTCTCTCTCAATATCATTAATTTCAGAGCCCGAAGCAGAACCTTTTCTCTTGTTCTTCTTCAGTACTCCTAGCGATTGGGAACCCAACCCACCATTTTCTCCACCTTCCTCCTCGATAGCTCCATTACCCAAGTCGCGGCGGTCCCGATTCTTCTCCTTCCTCTTCGATTTCTTGATCTCCGACGAACTTTTGGAAGCCTCCTCAGCAGAACCCAAATCGTTTCCAGCCCTTTTCTCCTTGCCGTTCTTCAAACTCTTCACGTCATCAACAATATGGTCATTAGAACCGGCACCGGGAGTTTCTTCAGCAGCAGCGGCAGGAATGGAATCCGAATCCGCCGCCTGGTGTCTCCGGCGAAAAGGGTTGTCACTGGAGAAGATAGAAACGCCGCCGCTTTGTACTCCAACGTTGCCGAACAGAGTCTCGAAAACGCTGGAGGAAGCAGAAAGGGAA

Coding sequence (CDS)

ATGCTTACATTCGCAAGTGGTACAGACCGGATCCTAACAGATTCAATCTCTCCAAATCGGCTAAACTCCTTGCCTAAAGCTTTTTTCTTCACTTTCAATGGCAAGTTCCCAACAAACACAGTTCTCAAAAGCTTGCTTTCATCATCAAATCCTTCCTTCGAAACCAACATCTCCGAAGGATCGTCCAGTGCTTTCCTCTTTTTCCCAGCAACATTGCCCCCTGAACCTTCCTCCCCATCCTCAGCTACCTCCGATGCACCATACTTCCTCGCTTCATACTCTCTCTCAATATCATTAATTTCAGAGCCCGAAGCAGAACCTTTTCTCTTGTTCTTCTTCAGTACTCCTAGCGATTGGGAACCCAACCCACCATTTTCTCCACCTTCCTCCTCGATAGCTCCATTACCCAAGTCGCGGCGGTCCCGATTCTTCTCCTTCCTCTTCGATTTCTTGATCTCCGACGAACTTTTGGAAGCCTCCTCAGCAGAACCCAAATCGTTTCCAGCCCTTTTCTCCTTGCCGTTCTTCAAACTCTTCACGTCATCAACAATATGGTCATTAGAACCGGCACCGGGAGTTTCTTCAGCAGCAGCGGCAGGAATGGAATCCGAATCCGCCGCCTGGTGTCTCCGGCGAAAAGGGTTGTCACTGGAGAAGATAGAAACGCCGCCGCTTTGTACTCCAACGTTGCCGAACAGAGTCTCGAAAACGCTGGAGGAAGCAGAAAGGGAA

Protein sequence

MLTFASGTDRILTDSISPNRLNSLPKAFFFTFNGKFPTNTVLKSLLSSSNPSFETNISEGSSSAFLFFPATLPPEPSSPSSATSDAPYFLASYSLSISLISEPEAEPFLLFFFSTPSDWEPNPPFSPPSSSIAPLPKSRRSRFFSFLFDFLISDELLEASSAEPKSFPALFSLPFFKLFTSSTIWSLEPAPGVSSAAAAGMESESAAWCLRRKGLSLEKIETPPLCTPTLPNRVSKTLEEAERE

Homology

[Close]

BLAST of MS021108 vs. ExPASy TrEMBL
Match: A0A0A0L6F9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G009470 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 1.4e-59
Identity = 157/249 (63.05%), Postives = 171/249 (68.67%), Query Frame = 0


Query: 1   MLTFAS--GTDRILTDSISPNRLNSLPKAFFFTFNGKFPTNTVLKSLLSSSNPSFETNIS 60
           MLTFA   GTDRILT+SISPN LNSL KAFFFTFNGKFPTNTVLKSLLSSSNPSF TNIS
Sbjct: 1   MLTFAMSIGTDRILTESISPNWLNSLAKAFFFTFNGKFPTNTVLKSLLSSSNPSFVTNIS 60

Query: 61  EGSSSAFLFFPATLPPEPSSPSSATSDAPYFLASYSLSISLISEPEAEP-FLLFFFSTPS 120
           EGSS+AFLFFP T PPEPS+ SSATSD PYFLASYSLS   ISEP+  P FLL  F+ P 
Sbjct: 61  EGSSNAFLFFPTTFPPEPSTSSSATSDTPYFLASYSLS---ISEPKTVPFFLLLSFNPPC 120

Query: 121 DWEPNPPFSPPSSSIAPLPKSRRSR--FFSFLFDFLISDELLEASSAEPKSFPALFSLPF 180
           D   + P SP SS+++    + RSR  FFSF  DFLISDE+L   S E KS P L SLPF
Sbjct: 121 D---SKPLSPSSSTLS----NSRSRDFFFSFFLDFLISDEVL-TPSVESKSIPTLLSLPF 180

Query: 181 FKLFTSSTIWSLEPAPGVSSAAAAGMESESAAWCLRRKGLSLEKIETPPLCTPTLPNRVS 240
           F L                SA   G ESE+      RKGLS+EKIET    TP LP RVS
Sbjct: 181 FLLI---------------SAGGGGTESEA----FLRKGLSVEKIETGGFSTPALPKRVS 219

Query: 241 KTLEEAERE 245
           KTL+E E E
Sbjct: 241 KTLKEEEEE 219

The following BLAST results are available for this feature:

BLAST of MS021108 vs.


Match Name	E-value	Identity	Description

BLAST of MS021108 vs.


Match Name	E-value	Identity	Description

BLAST of MS021108 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6F9	1.4e-59	63.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G009470 PE=4 SV=1	[more]

BLAST of MS021108 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 238..244

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS021108.1	MS021108.1	mRNA