MS021098 (gene) Bitter gourd (TR) v1

Overview


Name	MS021098
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Dolichol phosphate-mannose biosynthesis regulatory protein
Location	scaffold290: 1252265 .. 1252593 (-)
RNA-Seq Expression	MS021098
Synteny	MS021098

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTAGCAGACAAGACAGTCGGATTTTTGTTATCACTCACCAGCTTGTCTATATTCACTTATTATACTTTATGGGTCATCATCCTGGTAAGATTATCTTTCATGTACATAATCTGATTTAGTGAACTTGATAAGGACTGTTATAAACCAATGTAACTTGTTTTGTTTAATGGCAGCCATTTGTAGATAGCGATCACTTCATCCACAACTATTTCTTACCACAAGAGTATGCTATTCTGATACCTGTGTTTGCTGGTGTGCTACTCCTCTGCTTCTTAGGTTTATTTGTAGGAATGGTGATGCTCAAATCTAAAAAGAAGAAAGCA

mRNA sequence

ATGGAGTTAGCAGACAAGACAGTCGGATTTTTGTTATCACTCACCAGCTTGTCTATATTCACTTATTATACTTTATGGGTCATCATCCTGCCATTTGTAGATAGCGATCACTTCATCCACAACTATTTCTTACCACAAGAGTATGCTATTCTGATACCTGTGTTTGCTGGTGTGCTACTCCTCTGCTTCTTAGGTTTATTTGTAGGAATGGTGATGCTCAAATCTAAAAAGAAGAAAGCA

Coding sequence (CDS)

ATGGAGTTAGCAGACAAGACAGTCGGATTTTTGTTATCACTCACCAGCTTGTCTATATTCACTTATTATACTTTATGGGTCATCATCCTGCCATTTGTAGATAGCGATCACTTCATCCACAACTATTTCTTACCACAAGAGTATGCTATTCTGATACCTGTGTTTGCTGGTGTGCTACTCCTCTGCTTCTTAGGTTTATTTGTAGGAATGGTGATGCTCAAATCTAAAAAGAAGAAAGCA

Protein sequence

MELADKTVGFLLSLTSLSIFTYYTLWVIILPFVDSDHFIHNYFLPQEYAILIPVFAGVLLLCFLGLFVGMVMLKSKKKKA

Homology

[Close]

BLAST of MS021098 vs. NCBI nr
Match: XP_022145372.1 (dolichol-phosphate mannose synthase subunit 2 [Momordica charantia] >XP_022145373.1 dolichol-phosphate mannose synthase subunit 2 [Momordica charantia] >XP_022145374.1 dolichol-phosphate mannose synthase subunit 2 [Momordica charantia])

HSP 1 Score: 154.1 bits (388), Expect = 5.2e-34
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MELADKTVGFLLSLTSLSIFTYYTLWVIILPFVDSDHFIHNYFLPQEYAILIPVFAGVLL 60
          MELADKTVGFLLSLTSLSIFTYYTLWVIILPFVDSDHFIHNYFLPQEYAILIPVFAGVLL
Sbjct: 1  MELADKTVGFLLSLTSLSIFTYYTLWVIILPFVDSDHFIHNYFLPQEYAILIPVFAGVLL 60

Query: 61 LCFLGLFVGMVMLKSKKKKA 81
          LCFLGLFVGMVMLKSKKKKA
Sbjct: 61 LCFLGLFVGMVMLKSKKKKA 80

[Close]

BLAST of MS021098 vs. NCBI nr
Match: XP_038904650.1 (dolichol-phosphate mannose synthase subunit 2 [Benincasa hispida] >XP_038904651.1 dolichol-phosphate mannose synthase subunit 2 [Benincasa hispida] >XP_038904652.1 dolichol-phosphate mannose synthase subunit 2 [Benincasa hispida] >XP_038904653.1 dolichol-phosphate mannose synthase subunit 2 [Benincasa hispida] >XP_038904654.1 dolichol-phosphate mannose synthase subunit 2 [Benincasa hispida])

HSP 1 Score: 150.2 bits (378), Expect = 7.5e-33
Identity = 76/80 (95.00%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 1  MELADKTVGFLLSLTSLSIFTYYTLWVIILPFVDSDHFIHNYFLPQEYAILIPVFAGVLL 60
          MELADKTVGFLLSLTSLSIFTYYT WVIILPFVDSDHFIHNYFLPQEYAILIP+FAGV+L
Sbjct: 1  MELADKTVGFLLSLTSLSIFTYYTFWVIILPFVDSDHFIHNYFLPQEYAILIPIFAGVVL 60

Query: 61 LCFLGLFVGMVMLKSKKKKA 81
          LCFLG+FVGMVMLKSKKKKA
Sbjct: 61 LCFLGIFVGMVMLKSKKKKA 80

[Close]

BLAST of MS021098 vs. NCBI nr
Match: XP_004148753.1 (dolichol-phosphate mannose synthase subunit 2 [Cucumis sativus] >KGN55729.1 hypothetical protein Csa_010385 [Cucumis sativus])

HSP 1 Score: 145.6 bits (366), Expect = 1.9e-31
Identity = 74/80 (92.50%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 1  MELADKTVGFLLSLTSLSIFTYYTLWVIILPFVDSDHFIHNYFLPQEYAILIPVFAGVLL 60
          MELADKTVGFLLSLTSLSIFTYYT WV+ILPFVDSDHFIHNYFLPQEYAILIPVFAGV+L
Sbjct: 1  MELADKTVGFLLSLTSLSIFTYYTFWVVILPFVDSDHFIHNYFLPQEYAILIPVFAGVVL 60

Query: 61 LCFLGLFVGMVMLKSKKKKA 81
          LC LG+FVG VMLKSKKKKA
Sbjct: 61 LCLLGIFVGTVMLKSKKKKA 80

[Close]

BLAST of MS021098 vs. NCBI nr
Match: XP_008448655.2 (PREDICTED: dolichol phosphate-mannose biosynthesis regulatory protein [Cucumis melo])

HSP 1 Score: 145.2 bits (365), Expect = 2.4e-31
Identity = 73/80 (91.25%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 1  MELADKTVGFLLSLTSLSIFTYYTLWVIILPFVDSDHFIHNYFLPQEYAILIPVFAGVLL 60
          MELADKTVGFLLSLTSLSIFTYYT WV+ILPFVDSDHF+HNYFLPQEYAILIPVFAGV+L
Sbjct: 1  MELADKTVGFLLSLTSLSIFTYYTFWVVILPFVDSDHFVHNYFLPQEYAILIPVFAGVVL 60

Query: 61 LCFLGLFVGMVMLKSKKKKA 81
          LC LG+FVG VMLKSKKKKA
Sbjct: 61 LCLLGIFVGTVMLKSKKKKA 80

[Close]

BLAST of MS021098 vs. NCBI nr
Match: KAG6596723.1 (Binding partner of ACD11 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 144.4 bits (363), Expect = 4.1e-31
Identity = 74/80 (92.50%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 1   MELADKTVGFLLSLTSLSIFTYYTLWVIILPFVDSDHFIHNYFLPQEYAILIPVFAGVLL 60
           MELADKTVGFLLSLTSLSIFTYYT WVIILPFVDSDHFIHNYFLPQEYAILIPVFAGV+L
Sbjct: 390 MELADKTVGFLLSLTSLSIFTYYTFWVIILPFVDSDHFIHNYFLPQEYAILIPVFAGVVL 449

Query: 61  LCFLGLFVGMVMLKSKKKKA 81
           LC L +FVG+VMLKSKKKKA
Sbjct: 450 LCLLAIFVGIVMLKSKKKKA 469

[Close]

BLAST of MS021098 vs. ExPASy Swiss-Prot
Match: Q9CA79 (Dolichol-phosphate mannose synthase subunit 2 OS=Arabidopsis thaliana OX=3702 GN=DPMS2 PE=1 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 2.6e-28
Identity = 63/80 (78.75%), Postives = 70/80 (87.50%), Query Frame = 0


Query: 1  MELADKTVGFLLSLTSLSIFTYYTLWVIILPFVDSDHFIHNYFLPQEYAILIPVFAGVLL 60
          MELAD+ VG LLS  SLSIFTYYT WVIILPFVDSDHFIH YFLPQ+YAIL+PVFAG+ L
Sbjct: 1  MELADRAVGLLLSSISLSIFTYYTFWVIILPFVDSDHFIHKYFLPQDYAILVPVFAGIAL 60

Query: 61 LCFLGLFVGMVMLKSKKKKA 81
          L  + +F+GMVMLKSKKKKA
Sbjct: 61 LSLISVFIGMVMLKSKKKKA 80

[Close]

BLAST of MS021098 vs. ExPASy Swiss-Prot
Match: Q9Z324 (Dolichol phosphate-mannose biosynthesis regulatory protein OS=Mus musculus OX=10090 GN=Dpm2 PE=3 SV=3)

HSP 1 Score: 94.4 bits (233), Expect = 6.4e-19
Identity = 50/78 (64.10%), Postives = 61/78 (78.21%), Query Frame = 0


Query: 5  DKTVGFLLSLTSLSIFTYYTLWVIILPFVDSDHFIHNYFLPQEYAILIPVFAGVLLLCFL 64
          D+ VGF L   SL IFTYYT WVI+LPF+DS H IH YFLP+ YA+L+P+ AG+LLL F+
Sbjct: 6  DQAVGFGLVAVSLIIFTYYTTWVILLPFIDSQHVIHKYFLPRAYAVLLPLAAGLLLLLFV 65

Query: 65 GLFVGMVMLKSKK--KKA 81
          GLF+  VMLKS+K  KKA
Sbjct: 66 GLFITYVMLKSQKITKKA 83

[Close]

BLAST of MS021098 vs. ExPASy Swiss-Prot
Match: Q9Z325 (Dolichol phosphate-mannose biosynthesis regulatory protein OS=Rattus norvegicus OX=10116 GN=Dpm2 PE=1 SV=3)

HSP 1 Score: 93.2 bits (230), Expect = 1.4e-18
Identity = 49/78 (62.82%), Postives = 61/78 (78.21%), Query Frame = 0


Query: 5  DKTVGFLLSLTSLSIFTYYTLWVIILPFVDSDHFIHNYFLPQEYAILIPVFAGVLLLCFL 64
          D+ VGF L   SL IFTYYT WVI+LPF+DS H IH YFLP+ YA+L+P+ AG+LLL F+
Sbjct: 6  DQAVGFGLVAVSLIIFTYYTTWVILLPFIDSQHVIHKYFLPRAYAVLLPLAAGLLLLLFV 65

Query: 65 GLFVGMVMLKSKK--KKA 81
          GLF+  V+LKS+K  KKA
Sbjct: 66 GLFITYVLLKSQKVTKKA 83

[Close]

BLAST of MS021098 vs. ExPASy Swiss-Prot
Match: Q9Z1P1 (Dolichol phosphate-mannose biosynthesis regulatory protein OS=Cricetulus griseus OX=10029 GN=DPM2 PE=3 SV=3)

HSP 1 Score: 92.8 bits (229), Expect = 1.9e-18
Identity = 49/78 (62.82%), Postives = 60/78 (76.92%), Query Frame = 0


Query: 5  DKTVGFLLSLTSLSIFTYYTLWVIILPFVDSDHFIHNYFLPQEYAILIPVFAGVLLLCFL 64
          D+ VGF L   SL IFTYYT WVI+LPF+DS H IH YFLP+ YA+LIP+  G+LLL F+
Sbjct: 6  DQVVGFGLVAVSLIIFTYYTTWVILLPFIDSQHVIHKYFLPRAYAVLIPLATGLLLLLFV 65

Query: 65 GLFVGMVMLKSKK--KKA 81
          GLF+  VMLKS++  KKA
Sbjct: 66 GLFITYVMLKSRRLTKKA 83

[Close]

BLAST of MS021098 vs. ExPASy Swiss-Prot
Match: O94777 (Dolichol phosphate-mannose biosynthesis regulatory protein OS=Homo sapiens OX=9606 GN=DPM2 PE=1 SV=3)

HSP 1 Score: 90.9 bits (224), Expect = 7.1e-18
Identity = 48/78 (61.54%), Postives = 59/78 (75.64%), Query Frame = 0


Query: 5  DKTVGFLLSLTSLSIFTYYTLWVIILPFVDSDHFIHNYFLPQEYAILIPVFAGVLLLCFL 64
          D+ VG  L   SL IFTYYT WVI+LPF+DS H IH YFLP+ YA+ IP+ AG+LLL F+
Sbjct: 6  DQVVGLGLVAVSLIIFTYYTAWVILLPFIDSQHVIHKYFLPRAYAVAIPLAAGLLLLLFV 65

Query: 65 GLFVGMVMLKSKK--KKA 81
          GLF+  VMLK+K+  KKA
Sbjct: 66 GLFISYVMLKTKRVTKKA 83

[Close]

BLAST of MS021098 vs. ExPASy TrEMBL
Match: A0A6J1CVS7 (Dolichol phosphate-mannose biosynthesis regulatory protein OS=Momordica charantia OX=3673 GN=LOC111014839 PE=3 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 2.5e-34
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MELADKTVGFLLSLTSLSIFTYYTLWVIILPFVDSDHFIHNYFLPQEYAILIPVFAGVLL 60
          MELADKTVGFLLSLTSLSIFTYYTLWVIILPFVDSDHFIHNYFLPQEYAILIPVFAGVLL
Sbjct: 1  MELADKTVGFLLSLTSLSIFTYYTLWVIILPFVDSDHFIHNYFLPQEYAILIPVFAGVLL 60

Query: 61 LCFLGLFVGMVMLKSKKKKA 81
          LCFLGLFVGMVMLKSKKKKA
Sbjct: 61 LCFLGLFVGMVMLKSKKKKA 80

[Close]

BLAST of MS021098 vs. ExPASy TrEMBL
Match: A0A0A0L3V9 (Dolichol phosphate-mannose biosynthesis regulatory protein OS=Cucumis sativus OX=3659 GN=Csa_3G008860 PE=3 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 9.0e-32
Identity = 74/80 (92.50%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 1  MELADKTVGFLLSLTSLSIFTYYTLWVIILPFVDSDHFIHNYFLPQEYAILIPVFAGVLL 60
          MELADKTVGFLLSLTSLSIFTYYT WV+ILPFVDSDHFIHNYFLPQEYAILIPVFAGV+L
Sbjct: 1  MELADKTVGFLLSLTSLSIFTYYTFWVVILPFVDSDHFIHNYFLPQEYAILIPVFAGVVL 60

Query: 61 LCFLGLFVGMVMLKSKKKKA 81
          LC LG+FVG VMLKSKKKKA
Sbjct: 61 LCLLGIFVGTVMLKSKKKKA 80

[Close]

BLAST of MS021098 vs. ExPASy TrEMBL
Match: A0A1S3BL34 (Dolichol phosphate-mannose biosynthesis regulatory protein OS=Cucumis melo OX=3656 GN=LOC103490758 PE=3 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.2e-31
Identity = 73/80 (91.25%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 1  MELADKTVGFLLSLTSLSIFTYYTLWVIILPFVDSDHFIHNYFLPQEYAILIPVFAGVLL 60
          MELADKTVGFLLSLTSLSIFTYYT WV+ILPFVDSDHF+HNYFLPQEYAILIPVFAGV+L
Sbjct: 1  MELADKTVGFLLSLTSLSIFTYYTFWVVILPFVDSDHFVHNYFLPQEYAILIPVFAGVVL 60

Query: 61 LCFLGLFVGMVMLKSKKKKA 81
          LC LG+FVG VMLKSKKKKA
Sbjct: 61 LCLLGIFVGTVMLKSKKKKA 80

[Close]

BLAST of MS021098 vs. ExPASy TrEMBL
Match: A0A6J1EF77 (Dolichol phosphate-mannose biosynthesis regulatory protein OS=Cucurbita moschata OX=3662 GN=LOC111432714 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.6e-31
Identity = 73/80 (91.25%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 1  MELADKTVGFLLSLTSLSIFTYYTLWVIILPFVDSDHFIHNYFLPQEYAILIPVFAGVLL 60
          MELADKTVGFLLSLTSLSIFTYYT W+IILPFVDSDHFIHNYFLPQEYAILIPVFAGV+L
Sbjct: 1  MELADKTVGFLLSLTSLSIFTYYTFWIIILPFVDSDHFIHNYFLPQEYAILIPVFAGVVL 60

Query: 61 LCFLGLFVGMVMLKSKKKKA 81
          LC L +FVG+VMLKSKKKKA
Sbjct: 61 LCLLAIFVGIVMLKSKKKKA 80

[Close]

BLAST of MS021098 vs. ExPASy TrEMBL
Match: A0A6J1E5W0 (Dolichol phosphate-mannose biosynthesis regulatory protein OS=Cucurbita moschata OX=3662 GN=LOC111431073 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 9.9e-31
Identity = 72/80 (90.00%), Postives = 78/80 (97.50%), Query Frame = 0


Query: 1  MELADKTVGFLLSLTSLSIFTYYTLWVIILPFVDSDHFIHNYFLPQEYAILIPVFAGVLL 60
          MELADKTVGFLLSLTSLSIFTYYT WVIILPFVDSDHFIH+YFLPQE+AILIPVFAGV+L
Sbjct: 1  MELADKTVGFLLSLTSLSIFTYYTFWVIILPFVDSDHFIHSYFLPQEFAILIPVFAGVVL 60

Query: 61 LCFLGLFVGMVMLKSKKKKA 81
          LC LG+FVG+VMLKSK+KKA
Sbjct: 61 LCLLGIFVGIVMLKSKRKKA 80

[Close]

BLAST of MS021098 vs. TAIR 10
Match: AT1G74340.1 (dolichol phosphate-mannose biosynthesis regulatory protein-related )

HSP 1 Score: 125.6 bits (314), Expect = 1.8e-29
Identity = 63/80 (78.75%), Postives = 70/80 (87.50%), Query Frame = 0


Query: 1  MELADKTVGFLLSLTSLSIFTYYTLWVIILPFVDSDHFIHNYFLPQEYAILIPVFAGVLL 60
          MELAD+ VG LLS  SLSIFTYYT WVIILPFVDSDHFIH YFLPQ+YAIL+PVFAG+ L
Sbjct: 1  MELADRAVGLLLSSISLSIFTYYTFWVIILPFVDSDHFIHKYFLPQDYAILVPVFAGIAL 60

Query: 61 LCFLGLFVGMVMLKSKKKKA 81
          L  + +F+GMVMLKSKKKKA
Sbjct: 61 LSLISVFIGMVMLKSKKKKA 80

The following BLAST results are available for this feature:

BLAST of MS021098 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145372.1	5.2e-34	100.00	dolichol-phosphate mannose synthase subunit 2 [Momordica charantia] >XP_02214537...	[more]
XP_038904650.1	7.5e-33	95.00	dolichol-phosphate mannose synthase subunit 2 [Benincasa hispida] >XP_038904651....	[more]
XP_004148753.1	1.9e-31	92.50	dolichol-phosphate mannose synthase subunit 2 [Cucumis sativus] >KGN55729.1 hypo...	[more]
XP_008448655.2	2.4e-31	91.25	PREDICTED: dolichol phosphate-mannose biosynthesis regulatory protein [Cucumis m...	[more]
KAG6596723.1	4.1e-31	92.50	Binding partner of ACD11 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of MS021098 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CA79	2.6e-28	78.75	Dolichol-phosphate mannose synthase subunit 2 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9Z324	6.4e-19	64.10	Dolichol phosphate-mannose biosynthesis regulatory protein OS=Mus musculus OX=10...	[more]
Q9Z325	1.4e-18	62.82	Dolichol phosphate-mannose biosynthesis regulatory protein OS=Rattus norvegicus ...	[more]
Q9Z1P1	1.9e-18	62.82	Dolichol phosphate-mannose biosynthesis regulatory protein OS=Cricetulus griseus...	[more]
O94777	7.1e-18	61.54	Dolichol phosphate-mannose biosynthesis regulatory protein OS=Homo sapiens OX=96...	[more]

BLAST of MS021098 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CVS7	2.5e-34	100.00	Dolichol phosphate-mannose biosynthesis regulatory protein OS=Momordica charanti...	[more]
A0A0A0L3V9	9.0e-32	92.50	Dolichol phosphate-mannose biosynthesis regulatory protein OS=Cucumis sativus OX...	[more]
A0A1S3BL34	1.2e-31	91.25	Dolichol phosphate-mannose biosynthesis regulatory protein OS=Cucumis melo OX=36...	[more]
A0A6J1EF77	2.6e-31	91.25	Dolichol phosphate-mannose biosynthesis regulatory protein OS=Cucurbita moschata...	[more]
A0A6J1E5W0	9.9e-31	90.00	Dolichol phosphate-mannose biosynthesis regulatory protein OS=Cucurbita moschata...	[more]

BLAST of MS021098 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G74340.1	1.8e-29	78.75	dolichol phosphate-mannose biosynthesis regulatory protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009914	Dolichol phosphate-mannose biosynthesis regulatory	PFAM	PF07297	DPM2	coord: 4..79 e-value: 5.8E-36 score: 122.6
IPR009914	Dolichol phosphate-mannose biosynthesis regulatory	PANTHER	PTHR15039	DOLICHOL PHOSPHATE-MANNOSE BIOSYNTHESIS REGULATORY PROTEIN	coord: 1..80
None	No IPR available	PANTHER	PTHR15039:SF12	DOLICHOL PHOSPHATE-MANNOSE BIOSYNTHESIS REGULATORY PROTEIN	coord: 1..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS021098.1	MS021098.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019348	dolichol metabolic process
cellular_component	GO:0030176	integral component of endoplasmic reticulum membrane
molecular_function	GO:0030234	enzyme regulator activity