MS021026 (gene) Bitter gourd (TR) v1

Overview
NameMS021026
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold290: 634754 .. 635167 (-)
RNA-Seq ExpressionMS021026
SyntenyMS021026
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAACAAAAATGGAAAACAATTATTGGACGATGTCAAAGCACGTGGGAGCAAGAGAGATGAATGGAACATTGTTGTTGAGAGAAAATGAATTGAAGCTGAAAGAGAATTTATTCAAATGGTGGCCACAAAGCAAAGTTGAGAATGCGATAAAAAACATAAGAAAAGGATCCAAAATCATTCTATTTGATGTGAATGGAGACAGCCCCAAAGCAAAAACCATGAGGAGGATTTCTTCAGAAGACTTCACTATTGAGTGGGACATCAAAGGCAGAAATTATATCGTCGGGGATGAGATTTTCATGCGTTGGGATCGAGAGAAGGAGTGGTTATGTTACATGGTCGTCCGAAATTGTGCTATTAGAATGAATGTAGAAATGCCTGATGCTTCTTCGAGAACCTCTTCTCCAATTAAT

mRNA sequence

AAAACAAAAATGGAAAACAATTATTGGACGATGTCAAAGCACGTGGGAGCAAGAGAGATGAATGGAACATTGTTGTTGAGAGAAAATGAATTGAAGCTGAAAGAGAATTTATTCAAATGGTGGCCACAAAGCAAAGTTGAGAATGCGATAAAAAACATAAGAAAAGGATCCAAAATCATTCTATTTGATGTGAATGGAGACAGCCCCAAAGCAAAAACCATGAGGAGGATTTCTTCAGAAGACTTCACTATTGAGTGGGACATCAAAGGCAGAAATTATATCGTCGGGGATGAGATTTTCATGCGTTGGGATCGAGAGAAGGAGTGGTTATGTTACATGGTCGTCCGAAATTGTGCTATTAGAATGAATGTAGAAATGCCTGATGCTTCTTCGAGAACCTCTTCTCCAATTAAT

Coding sequence (CDS)

AAAACAAAAATGGAAAACAATTATTGGACGATGTCAAAGCACGTGGGAGCAAGAGAGATGAATGGAACATTGTTGTTGAGAGAAAATGAATTGAAGCTGAAAGAGAATTTATTCAAATGGTGGCCACAAAGCAAAGTTGAGAATGCGATAAAAAACATAAGAAAAGGATCCAAAATCATTCTATTTGATGTGAATGGAGACAGCCCCAAAGCAAAAACCATGAGGAGGATTTCTTCAGAAGACTTCACTATTGAGTGGGACATCAAAGGCAGAAATTATATCGTCGGGGATGAGATTTTCATGCGTTGGGATCGAGAGAAGGAGTGGTTATGTTACATGGTCGTCCGAAATTGTGCTATTAGAATGAATGTAGAAATGCCTGATGCTTCTTCGAGAACCTCTTCTCCAATTAAT

Protein sequence

KTKMENNYWTMSKHVGAREMNGTLLLRENELKLKENLFKWWPQSKVENAIKNIRKGSKIILFDVNGDSPKAKTMRRISSEDFTIEWDIKGRNYIVGDEIFMRWDREKEWLCYMVVRNCAIRMNVEMPDASSRTSSPIN
Homology
BLAST of MS021026 vs. NCBI nr
Match: KAG6575830.1 (hypothetical protein SDJN03_26469, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 89.0 bits (219), Expect = 3.5e-14
Identity = 48/127 (37.80%), Postives = 70/127 (55.12%), Query Frame = 0

Query: 9   WTMSKHVGAREMNGTLLLREN--ELKLKENLFKWWPQSKVENAIKNIRKGSKIILFDVNG 68
           WTM K +   +MNG L LRE+  +  ++ NLF WWP+SKV +  + +    +IIL+DVN 
Sbjct: 5   WTMIKKLEDADMNGLLQLREDDEDADIRANLFNWWPRSKVRDLKRVVGSEVRIILYDVNM 64

Query: 69  DSPKAKTMRRISSEDFTIEWDIKGRNYIVGDEIFMRWDREKEWLCYMVVRNCAIRMNVEM 128
           D     TMR +    + IEWDI+ + Y  GD++ M WD     L Y +++        E+
Sbjct: 65  DQAIQTTMRWLGMARYHIEWDIQNKPYSSGDDMLMFWDLRYNRLAYKIIQT----YYPEI 124

Query: 129 PDASSRT 134
            DA S T
Sbjct: 125 SDACSGT 127

BLAST of MS021026 vs. NCBI nr
Match: KAG6575832.1 (hypothetical protein SDJN03_26471, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 87.8 bits (216), Expect = 7.9e-14
Identity = 49/128 (38.28%), Postives = 71/128 (55.47%), Query Frame = 0

Query: 9   WTMSKHVGAREMNGTLLLRENEL--KLKENLFKWWPQSKVENAIKNIRKGSKIILFDVNG 68
           WTM K +   +MNG L LRE+++   +  NLF+WW +SKV +  K I   +KI LFD N 
Sbjct: 5   WTMIKKLQEADMNGLLQLREDDVDTDINTNLFRWWSRSKVRDLKKQIGNEAKITLFDENT 64

Query: 69  DSPKAKTMRRISSEDFTIEWDIKGRNYIVGDEIFMRWDREKEWLCYMVVRNCAIRMNVEM 128
           +     T+R + +  + IEWD+K + Y  G ++ M WD +   L Y V++        EM
Sbjct: 65  NEVMHTTIRWLGTPRYHIEWDVKNKPYASGQDMLMGWDLKYNRLAYKVLQ----IPFPEM 124

Query: 129 PDASSRTS 135
            DA S TS
Sbjct: 125 SDAGSSTS 128

BLAST of MS021026 vs. NCBI nr
Match: OWM79991.1 (hypothetical protein CDL15_Pgr006295 [Punica granatum] >PKI47341.1 hypothetical protein CRG98_032266 [Punica granatum])

HSP 1 Score: 55.5 bits (132), Expect = 4.3e-04
Identity = 33/108 (30.56%), Postives = 62/108 (57.41%), Query Frame = 0

Query: 9   WTMSKHVGAREM-NGTLLLRENELKLKENLFKWWPQSKVENAIKNIRKGSKIILFDVNGD 68
           WTM K + + ++    L+L   E+ +  N+F++W + K+E A  N ++G+ I L  VNGD
Sbjct: 47  WTMWKKLESYDIFENNLVLDPREVDM-NNIFRYWSKGKIEQA--NTKEGAAIRLRHVNGD 106

Query: 69  SPKAKTMRRISSEDFTIEWDIKGRNYIVGDEIFMRWDREKEWLCYMVV 116
           +   K + + ++  + IEW+I G+ + + D I M +D   + L + V+
Sbjct: 107 TEATKLIMK-NNGIYYIEWNIGGKEFWIHDHILMYYDAVYDALVFNVL 150

BLAST of MS021026 vs. ExPASy TrEMBL
Match: A0A218X667 (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr006295 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.1e-04
Identity = 33/108 (30.56%), Postives = 62/108 (57.41%), Query Frame = 0

Query: 9   WTMSKHVGAREM-NGTLLLRENELKLKENLFKWWPQSKVENAIKNIRKGSKIILFDVNGD 68
           WTM K + + ++    L+L   E+ +  N+F++W + K+E A  N ++G+ I L  VNGD
Sbjct: 47  WTMWKKLESYDIFENNLVLDPREVDM-NNIFRYWSKGKIEQA--NTKEGAAIRLRHVNGD 106

Query: 69  SPKAKTMRRISSEDFTIEWDIKGRNYIVGDEIFMRWDREKEWLCYMVV 116
           +   K + + ++  + IEW+I G+ + + D I M +D   + L + V+
Sbjct: 107 TEATKLIMK-NNGIYYIEWNIGGKEFWIHDHILMYYDAVYDALVFNVL 150

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6575830.13.5e-1437.80hypothetical protein SDJN03_26469, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6575832.17.9e-1438.28hypothetical protein SDJN03_26471, partial [Cucurbita argyrosperma subsp. sorori... [more]
OWM79991.14.3e-0430.56hypothetical protein CDL15_Pgr006295 [Punica granatum] >PKI47341.1 hypothetical ... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A218X6672.1e-0430.56Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr006295 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS021026.1MS021026.1mRNA