MS021009 (gene) Bitter gourd (TR) v1

Overview


Name	MS021009
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	SKP1-like protein
Location	scaffold290: 508479 .. 509638 (-)
RNA-Seq Expression	MS021009
Synteny	MS021009

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTCGTCCAAGAAGATCATCCTCAAGAGCTCTGATGGCGAGCCTTTCGAAGTCGACGAGGCCGTGGCGCTCGAGTCCCAGACCATCCGCCACATGATCGAGGACGATTGCGCCGATAACGGCATCCCTCTCCCCAACGTCTCCAGCAAGATCTTGGCCAAGGTCATCGAGTATTGCCGCAAGCACGTCGACGCTTCCAACTCCGAGCCGCGCGCCTCTGAAGAAGACCTCAAGGCCTGGGACCGGGACTTCGTTAATGTTGATCAAGCTACTCTCTTCGATCTCATTCTGGTGATTCCTTTTTCGCGCTTTAGATCTCGTCGATTTTCTACGGTTTTCGATGTTTCTGATTGTTTTCTGTAGCCATCGACGCTGTACCGTTTGCCTGTTTGGTGCGATTTAGTTGTTTAGGGTTTTGAATCTTTGATTCGGAACGGAAATTTTTAGGGCTCTCGCTTTGATTTCTTTGTCGCAGATGACTGTCCGTCGAGCGTTGAGTTCTTTTCCTTTCAAATCGTTTATTCTTCTTTATCTGTATCGGCGTTTGCAATTGGTTGCTGTTAGGGATCGGTAGGGAAAGTTCTGTAGCATTAAAGTTCTCTGTTGTAGTTATGCAAATATCAATTTCTATGGTGTCTATGAATCAATAGAGACATGTCCGTTGCACTTTGATGATTGAAGCTGGTGATGCAAAAGGTGGTGGTATCTTTATCTTTTGCGCTTCTTGCGGAGATTCGGATTAATGATATGATGCTAAAGACGTCTGTATATGTGGTTATGATTTCAGATTTCTTATTTTTTGGGGTGTTAGCACGGTGTCATATTGTCAAATGATTGTTGCTTAGGTTGAAAACGCACGTATATGCCTAAATTTAAGCCATATTCTTGTTTCAGAAATTTCAAGCTGCCTGGGAAATTTTTATTGTTGTCCATAGTTTCTTGATTTTGCCCCATATTATTAATTTGTTCTTTATGCTATCCTGCAGGCTGCAAATTATCTGAACATCAAGAACTTGTTAGACCTAACATGCCAGACTGTTGCTGATATGATCAAGGGGAAGACCCCAGAGGAGATCCGGAAGACCTTTAACATCAAGAACGACTTCACACCGGAGGAAGAGGAGGAAGTTCGCAGGGAGAATCAGTGGGCTTTTGAA

mRNA sequence

ATGTCGTCGTCCAAGAAGATCATCCTCAAGAGCTCTGATGGCGAGCCTTTCGAAGTCGACGAGGCCGTGGCGCTCGAGTCCCAGACCATCCGCCACATGATCGAGGACGATTGCGCCGATAACGGCATCCCTCTCCCCAACGTCTCCAGCAAGATCTTGGCCAAGGTCATCGAGTATTGCCGCAAGCACGTCGACGCTTCCAACTCCGAGCCGCGCGCCTCTGAAGAAGACCTCAAGGCCTGGGACCGGGACTTCGTTAATGTTGATCAAGCTACTCTCTTCGATCTCATTCTGGCTGCAAATTATCTGAACATCAAGAACTTGTTAGACCTAACATGCCAGACTGTTGCTGATATGATCAAGGGGAAGACCCCAGAGGAGATCCGGAAGACCTTTAACATCAAGAACGACTTCACACCGGAGGAAGAGGAGGAAGTTCGCAGGGAGAATCAGTGGGCTTTTGAA

Coding sequence (CDS)

ATGTCGTCGTCCAAGAAGATCATCCTCAAGAGCTCTGATGGCGAGCCTTTCGAAGTCGACGAGGCCGTGGCGCTCGAGTCCCAGACCATCCGCCACATGATCGAGGACGATTGCGCCGATAACGGCATCCCTCTCCCCAACGTCTCCAGCAAGATCTTGGCCAAGGTCATCGAGTATTGCCGCAAGCACGTCGACGCTTCCAACTCCGAGCCGCGCGCCTCTGAAGAAGACCTCAAGGCCTGGGACCGGGACTTCGTTAATGTTGATCAAGCTACTCTCTTCGATCTCATTCTGGCTGCAAATTATCTGAACATCAAGAACTTGTTAGACCTAACATGCCAGACTGTTGCTGATATGATCAAGGGGAAGACCCCAGAGGAGATCCGGAAGACCTTTAACATCAAGAACGACTTCACACCGGAGGAAGAGGAGGAAGTTCGCAGGGAGAATCAGTGGGCTTTTGAA

Protein sequence

MSSSKKIILKSSDGEPFEVDEAVALESQTIRHMIEDDCADNGIPLPNVSSKILAKVIEYCRKHVDASNSEPRASEEDLKAWDRDFVNVDQATLFDLILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE

Homology

[Close]

BLAST of MS021009 vs. NCBI nr
Match: XP_022145436.1 (SKP1-like protein 1A [Momordica charantia])

HSP 1 Score: 307.4 bits (786), Expect = 7.1e-80
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MSSSKKIILKSSDGEPFEVDEAVALESQTIRHMIEDDCADNGIPLPNVSSKILAKVIEYC 60
           MSSSKKIILKSSDGEPFEVDEAVALESQTIRHMIEDDCADNGIPLPNVSSKILAKVIEYC
Sbjct: 1   MSSSKKIILKSSDGEPFEVDEAVALESQTIRHMIEDDCADNGIPLPNVSSKILAKVIEYC 60

Query: 61  RKHVDASNSEPRASEEDLKAWDRDFVNVDQATLFDLILAANYLNIKNLLDLTCQTVADMI 120
           RKHVDASNSEPRASEEDLKAWDRDFVNVDQATLFDLILAANYLNIKNLLDLTCQTVADMI
Sbjct: 61  RKHVDASNSEPRASEEDLKAWDRDFVNVDQATLFDLILAANYLNIKNLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of MS021009 vs. NCBI nr
Match: XP_022965297.1 (SKP1-like protein 1A [Cucurbita maxima] >KAG6577790.1 SKP1-like protein 1A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015829.1 SKP1-like protein 1A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 289.7 bits (740), Expect = 1.5e-74
Identity = 144/155 (92.90%), Postives = 150/155 (96.77%), Query Frame = 0


Query: 1   MSSSKKIILKSSDGEPFEVDEAVALESQTIRHMIEDDCADNGIPLPNVSSKILAKVIEYC 60
           MSSSKKI LKSSDGE FE+DE VALESQTIRHMIEDDCADNGIPLPNV+SKILAKVIEYC
Sbjct: 1   MSSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYC 60

Query: 61  RKHVDASNSEPRASEEDLKAWDRDFVNVDQATLFDLILAANYLNIKNLLDLTCQTVADMI 120
            KHVDAS+++PR SEEDLKAWDRDFVNVDQATLFDLILAANYLNIK+LLDLTCQTVADMI
Sbjct: 61  HKHVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of MS021009 vs. NCBI nr
Match: XP_022923340.1 (SKP1-like protein 1A [Cucurbita moschata])

HSP 1 Score: 288.1 bits (736), Expect = 4.5e-74
Identity = 143/155 (92.26%), Postives = 149/155 (96.13%), Query Frame = 0


Query: 1   MSSSKKIILKSSDGEPFEVDEAVALESQTIRHMIEDDCADNGIPLPNVSSKILAKVIEYC 60
           MSSSKKI LKSSDGE FE+DE VALESQTIRHMIEDDCADNGIPLPNV+SKIL KVIEYC
Sbjct: 1   MSSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILVKVIEYC 60

Query: 61  RKHVDASNSEPRASEEDLKAWDRDFVNVDQATLFDLILAANYLNIKNLLDLTCQTVADMI 120
            KHVDAS+++PR SEEDLKAWDRDFVNVDQATLFDLILAANYLNIK+LLDLTCQTVADMI
Sbjct: 61  HKHVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of MS021009 vs. NCBI nr
Match: XP_038903121.1 (SKP1-like protein 1A [Benincasa hispida])

HSP 1 Score: 286.6 bits (732), Expect = 1.3e-73
Identity = 142/155 (91.61%), Postives = 151/155 (97.42%), Query Frame = 0


Query: 1   MSSSKKIILKSSDGEPFEVDEAVALESQTIRHMIEDDCADNGIPLPNVSSKILAKVIEYC 60
           MSSSKKI LKSSDG+ FEVDEAVAL+SQTIRHMIEDDCADNGIPLPNV+S ILAKVIEYC
Sbjct: 1   MSSSKKITLKSSDGDSFEVDEAVALQSQTIRHMIEDDCADNGIPLPNVTSNILAKVIEYC 60

Query: 61  RKHVDASNSEPRASEEDLKAWDRDFVNVDQATLFDLILAANYLNIKNLLDLTCQTVADMI 120
           RKHVDAS+++PR S++DLKAWDRDFVNVDQATLFDLILAANYLNIK+LLDLTCQTVADMI
Sbjct: 61  RKHVDASSADPRLSDDDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of MS021009 vs. NCBI nr
Match: XP_023553541.1 (SKP1-like protein 1A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 285.8 bits (730), Expect = 2.2e-73
Identity = 143/155 (92.26%), Postives = 149/155 (96.13%), Query Frame = 0


Query: 1   MSSSKKIILKSSDGEPFEVDEAVALESQTIRHMIEDDCADNGIPLPNVSSKILAKVIEYC 60
           MSSSKKI LKSSDGE FE+DE VALESQTIRHMIEDDCADNGIPLPNV+SKILAKVIEY 
Sbjct: 1   MSSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYS 60

Query: 61  RKHVDASNSEPRASEEDLKAWDRDFVNVDQATLFDLILAANYLNIKNLLDLTCQTVADMI 120
            KHVDAS+++PR SEEDLKAWDRDFVNVDQATLFDLILAANYLNIK+LLDLTCQTVADMI
Sbjct: 61  HKHVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of MS021009 vs. ExPASy Swiss-Prot
Match: Q39255 (SKP1-like protein 1A OS=Arabidopsis thaliana OX=3702 GN=SKP1A PE=1 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 5.0e-68
Identity = 128/159 (80.50%), Postives = 144/159 (90.57%), Query Frame = 0


Query: 3   SSKKIILKSSDGEPFEVDEAVALESQTIRHMIEDDCADNGIPLPNVSSKILAKVIEYCRK 62
           S+KKI+LKSSDGE FEV+EAVALESQTI HM+EDDC DNG+PLPNV+SKILAKVIEYC++
Sbjct: 2   SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61

Query: 63  HVDASNSEPRA------SEEDLKAWDRDFVNVDQATLFDLILAANYLNIKNLLDLTCQTV 122
           HV+A+ S+  A      S++DLKAWD DF+ +DQATLF+LILAANYLNIKNLLDLTCQTV
Sbjct: 62  HVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTV 121

Query: 123 ADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           ADMIKGKTPEEIR TFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 122 ADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]

BLAST of MS021009 vs. ExPASy Swiss-Prot
Match: Q9FHW7 (SKP1-like protein 1B OS=Arabidopsis thaliana OX=3702 GN=SKP1B PE=1 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 6.1e-66
Identity = 130/171 (76.02%), Postives = 143/171 (83.63%), Query Frame = 0


Query: 1   MSSSKKIILKSSDGEPFEVDEAVALESQTIRHMIEDDCADNGIPLPNVSSKILAKVIEYC 60
           MS+ +KI LKSSDGE FE+DEAVALESQTI+HMIEDDC DNGIPLPNV+SKIL+KVIEYC
Sbjct: 1   MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYC 60

Query: 61  RKHVDAS-NSEPRA---------------SEEDLKAWDRDFVNVDQATLFDLILAANYLN 120
           ++HV+A+  SE  A               S+EDLK WD +F+ VDQ TLFDLILAANYLN
Sbjct: 61  KRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLN 120

Query: 121 IKNLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           IK LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

[Close]

BLAST of MS021009 vs. ExPASy Swiss-Prot
Match: Q6PL11 (SKP1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP1 PE=1 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 1.8e-65
Identity = 130/166 (78.31%), Postives = 137/166 (82.53%), Query Frame = 0


Query: 5   KKIILKSSDGEPFEVDEAVALESQTIRHMIEDDCADNGIPLPNVSSKILAKVIEYCRKHV 64
           K I LKSSDGE FEV+EAVA+ESQTIRHMIEDDCADNGIPLPNV+SKIL+KVIEYC KHV
Sbjct: 8   KMITLKSSDGEEFEVEEAVAMESQTIRHMIEDDCADNGIPLPNVNSKILSKVIEYCNKHV 67

Query: 65  ---------------DASNSEPRASEEDLKAWDRDFVNVDQATLFDLILAANYLNIKNLL 124
                           A+ + P  S EDLK WD DFV VDQATLFDLILAANYLNIK LL
Sbjct: 68  HAAAAAASKAADDAASAAAAVPPPSGEDLKNWDADFVKVDQATLFDLILAANYLNIKGLL 127

Query: 125 DLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           DLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEE+RRENQWAFE
Sbjct: 128 DLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEIRRENQWAFE 173

[Close]

BLAST of MS021009 vs. ExPASy Swiss-Prot
Match: Q651E8 (SKP1-like protein 20 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP20 PE=1 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 5.5e-59
Identity = 119/165 (72.12%), Postives = 132/165 (80.00%), Query Frame = 0


Query: 7   IILKSSDGEPFEVDEAVALESQTIRHMIEDDCADNGIPLPNVSSKILAKVIEYCRKHVDA 66
           I L+S +G+ FEV EAVA+ESQTIRHMIED CAD GIPLPNVS+KIL+KVIEYC KHV+A
Sbjct: 11  ITLRSCEGQVFEVAEAVAMESQTIRHMIEDKCADTGIPLPNVSAKILSKVIEYCSKHVEA 70

Query: 67  SNSEP----------------RASEEDLKAWDRDFVNVDQATLFDLILAANYLNIKNLLD 126
                                +A E++LK +D +FV VDQ+TLFDLILAANYLNIK LLD
Sbjct: 71  RGGAAAAADGDAPAPAAVEANKAVEDELKTFDAEFVKVDQSTLFDLILAANYLNIKGLLD 130

Query: 127 LTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           LTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 131 LTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 175

[Close]

BLAST of MS021009 vs. ExPASy Swiss-Prot
Match: O49484 (SKP1-like protein 11 OS=Arabidopsis thaliana OX=3702 GN=ASK11 PE=1 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.0e-57
Identity = 113/154 (73.38%), Postives = 132/154 (85.71%), Query Frame = 0


Query: 3   SSKKIILKSSDGEPFEVDEAVALESQTIRHMIEDDCADNGIPLPNVSSKILAKVIEYCRK 62
           SSK I+L SSDG+ FEV+EAVA++SQTI HM+EDDC  +GIPL NV SKIL KVIEYC+K
Sbjct: 2   SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query: 63  -HVDASNSEPRASEEDLKAWDRDFVNVDQATLFDLILAANYLNIKNLLDLTCQTVADMIK 122
            HVD +N     SEEDL  WD  F++++Q+T+F+LILAANYLNIK+LLDLTCQTVADMIK
Sbjct: 62  HHVDEANP---ISEEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADMIK 121

Query: 123 GKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           GKTPEEIR TFNI+NDFTPEEEE VR+ENQWAFE
Sbjct: 122 GKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

[Close]

BLAST of MS021009 vs. ExPASy TrEMBL
Match: A0A6J1CWB0 (SKP1-like protein OS=Momordica charantia OX=3673 GN=LOC111014883 PE=3 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 3.5e-80
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MSSSKKIILKSSDGEPFEVDEAVALESQTIRHMIEDDCADNGIPLPNVSSKILAKVIEYC 60
           MSSSKKIILKSSDGEPFEVDEAVALESQTIRHMIEDDCADNGIPLPNVSSKILAKVIEYC
Sbjct: 1   MSSSKKIILKSSDGEPFEVDEAVALESQTIRHMIEDDCADNGIPLPNVSSKILAKVIEYC 60

Query: 61  RKHVDASNSEPRASEEDLKAWDRDFVNVDQATLFDLILAANYLNIKNLLDLTCQTVADMI 120
           RKHVDASNSEPRASEEDLKAWDRDFVNVDQATLFDLILAANYLNIKNLLDLTCQTVADMI
Sbjct: 61  RKHVDASNSEPRASEEDLKAWDRDFVNVDQATLFDLILAANYLNIKNLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of MS021009 vs. ExPASy TrEMBL
Match: A0A6J1HJY3 (SKP1-like protein OS=Cucurbita maxima OX=3661 GN=LOC111465205 PE=3 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 7.4e-75
Identity = 144/155 (92.90%), Postives = 150/155 (96.77%), Query Frame = 0


Query: 1   MSSSKKIILKSSDGEPFEVDEAVALESQTIRHMIEDDCADNGIPLPNVSSKILAKVIEYC 60
           MSSSKKI LKSSDGE FE+DE VALESQTIRHMIEDDCADNGIPLPNV+SKILAKVIEYC
Sbjct: 1   MSSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYC 60

Query: 61  RKHVDASNSEPRASEEDLKAWDRDFVNVDQATLFDLILAANYLNIKNLLDLTCQTVADMI 120
            KHVDAS+++PR SEEDLKAWDRDFVNVDQATLFDLILAANYLNIK+LLDLTCQTVADMI
Sbjct: 61  HKHVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of MS021009 vs. ExPASy TrEMBL
Match: A0A6J1EBI5 (SKP1-like protein OS=Cucurbita moschata OX=3662 GN=LOC111431062 PE=3 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 2.2e-74
Identity = 143/155 (92.26%), Postives = 149/155 (96.13%), Query Frame = 0


Query: 1   MSSSKKIILKSSDGEPFEVDEAVALESQTIRHMIEDDCADNGIPLPNVSSKILAKVIEYC 60
           MSSSKKI LKSSDGE FE+DE VALESQTIRHMIEDDCADNGIPLPNV+SKIL KVIEYC
Sbjct: 1   MSSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILVKVIEYC 60

Query: 61  RKHVDASNSEPRASEEDLKAWDRDFVNVDQATLFDLILAANYLNIKNLLDLTCQTVADMI 120
            KHVDAS+++PR SEEDLKAWDRDFVNVDQATLFDLILAANYLNIK+LLDLTCQTVADMI
Sbjct: 61  HKHVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of MS021009 vs. ExPASy TrEMBL
Match: A0A2I4EKZ9 (SKP1-like protein OS=Juglans regia OX=51240 GN=LOC109015676 PE=3 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 4.5e-72
Identity = 140/155 (90.32%), Postives = 148/155 (95.48%), Query Frame = 0


Query: 1   MSSSKKIILKSSDGEPFEVDEAVALESQTIRHMIEDDCADNGIPLPNVSSKILAKVIEYC 60
           MSSSKKI LKSSDGE FEVDEAVALESQTI+HMIEDDCADNGIPLPNV+SKILAKVIEYC
Sbjct: 1   MSSSKKITLKSSDGESFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILAKVIEYC 60

Query: 61  RKHVDASNSEPRASEEDLKAWDRDFVNVDQATLFDLILAANYLNIKNLLDLTCQTVADMI 120
           +KHV+ +NSE R SE+DLKAWD +FV VDQATLFDLILAANYLNIK+LLDLTCQTVADMI
Sbjct: 61  KKHVEPANSEDRTSEDDLKAWDMEFVRVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of MS021009 vs. ExPASy TrEMBL
Match: A0A5N6QXB4 (SKP1-like protein OS=Carpinus fangiana OX=176857 GN=FH972_007010 PE=3 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 1.0e-71
Identity = 139/155 (89.68%), Postives = 148/155 (95.48%), Query Frame = 0


Query: 1   MSSSKKIILKSSDGEPFEVDEAVALESQTIRHMIEDDCADNGIPLPNVSSKILAKVIEYC 60
           MSSSKKI LKSSDGE FEVDEAVALESQTI+HMIEDDCADNGIPLPNV+SKILAKVIEYC
Sbjct: 1   MSSSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILAKVIEYC 60

Query: 61  RKHVDASNSEPRASEEDLKAWDRDFVNVDQATLFDLILAANYLNIKNLLDLTCQTVADMI 120
           +KHV+A+N E R S++DLKAWD +FV VDQATLFDLILAANYLNIK+LLDLTCQTVADMI
Sbjct: 61  KKHVEAANPEERTSDDDLKAWDAEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of MS021009 vs. TAIR 10
Match: AT1G75950.1 (S phase kinase-associated protein 1 )

HSP 1 Score: 258.5 bits (659), Expect = 3.5e-69
Identity = 128/159 (80.50%), Postives = 144/159 (90.57%), Query Frame = 0


Query: 3   SSKKIILKSSDGEPFEVDEAVALESQTIRHMIEDDCADNGIPLPNVSSKILAKVIEYCRK 62
           S+KKI+LKSSDGE FEV+EAVALESQTI HM+EDDC DNG+PLPNV+SKILAKVIEYC++
Sbjct: 2   SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61

Query: 63  HVDASNSEPRA------SEEDLKAWDRDFVNVDQATLFDLILAANYLNIKNLLDLTCQTV 122
           HV+A+ S+  A      S++DLKAWD DF+ +DQATLF+LILAANYLNIKNLLDLTCQTV
Sbjct: 62  HVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTV 121

Query: 123 ADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           ADMIKGKTPEEIR TFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 122 ADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]

BLAST of MS021009 vs. TAIR 10
Match: AT5G42190.1 (E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein )

HSP 1 Score: 251.5 bits (641), Expect = 4.3e-67
Identity = 130/171 (76.02%), Postives = 143/171 (83.63%), Query Frame = 0


Query: 1   MSSSKKIILKSSDGEPFEVDEAVALESQTIRHMIEDDCADNGIPLPNVSSKILAKVIEYC 60
           MS+ +KI LKSSDGE FE+DEAVALESQTI+HMIEDDC DNGIPLPNV+SKIL+KVIEYC
Sbjct: 1   MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYC 60

Query: 61  RKHVDAS-NSEPRA---------------SEEDLKAWDRDFVNVDQATLFDLILAANYLN 120
           ++HV+A+  SE  A               S+EDLK WD +F+ VDQ TLFDLILAANYLN
Sbjct: 61  KRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLN 120

Query: 121 IKNLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           IK LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

[Close]

BLAST of MS021009 vs. TAIR 10
Match: AT4G34210.1 (SKP1-like 11 )

HSP 1 Score: 224.2 bits (570), Expect = 7.4e-59
Identity = 113/154 (73.38%), Postives = 132/154 (85.71%), Query Frame = 0


Query: 3   SSKKIILKSSDGEPFEVDEAVALESQTIRHMIEDDCADNGIPLPNVSSKILAKVIEYCRK 62
           SSK I+L SSDG+ FEV+EAVA++SQTI HM+EDDC  +GIPL NV SKIL KVIEYC+K
Sbjct: 2   SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query: 63  -HVDASNSEPRASEEDLKAWDRDFVNVDQATLFDLILAANYLNIKNLLDLTCQTVADMIK 122
            HVD +N     SEEDL  WD  F++++Q+T+F+LILAANYLNIK+LLDLTCQTVADMIK
Sbjct: 62  HHVDEANP---ISEEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADMIK 121

Query: 123 GKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           GKTPEEIR TFNI+NDFTPEEEE VR+ENQWAFE
Sbjct: 122 GKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

[Close]

BLAST of MS021009 vs. TAIR 10
Match: AT4G34470.1 (SKP1-like 12 )

HSP 1 Score: 223.0 bits (567), Expect = 1.6e-58
Identity = 112/154 (72.73%), Postives = 131/154 (85.06%), Query Frame = 0


Query: 3   SSKKIILKSSDGEPFEVDEAVALESQTIRHMIEDDCADNGIPLPNVSSKILAKVIEYCRK 62
           SSK I+L SSDG+ FEV+EAVA++SQTI HM+EDDC  +GIPL NV SKIL KVIEYC+K
Sbjct: 2   SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query: 63  -HVDASNSEPRASEEDLKAWDRDFVNVDQATLFDLILAANYLNIKNLLDLTCQTVADMIK 122
            HVD +N     SEEDL  WD  F++++Q+T+F+LILAANYLNIK+L DLTCQTVADMIK
Sbjct: 62  YHVDEANP---ISEEDLNKWDEKFMDLEQSTIFELILAANYLNIKSLFDLTCQTVADMIK 121

Query: 123 GKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           GKTPEEIR TFNI+NDFTPEEEE VR+ENQWAFE
Sbjct: 122 GKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

[Close]

BLAST of MS021009 vs. TAIR 10
Match: AT1G20140.1 (SKP1-like 4 )

HSP 1 Score: 218.0 bits (554), Expect = 5.3e-57
Identity = 109/160 (68.12%), Postives = 130/160 (81.25%), Query Frame = 0


Query: 3   SSKKIILKSSDGEPFEVDEAVALESQTIRHMIEDDCADNGIPLPNVSSKILAKVIEYCRK 62
           + K IILKSSDGE FE++EAVA++SQTI+HMIEDDCADNGIPLPNV+  ILAKVIEYC+K
Sbjct: 4   TKKMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKK 63

Query: 63  HVDAS-------NSEPRASEEDLKAWDRDFVNVDQATLFDLILAANYLNIKNLLDLTCQT 122
           HV+A+       +    A  ++LK WD +FV VDQ TLFDLILAANYLNI  LLDLTC+ 
Sbjct: 64  HVEAAAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKA 123

Query: 123 VADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           VAD ++GKTPE++R  FNIKND+TPEEE EVR EN+WAFE
Sbjct: 124 VADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163

The following BLAST results are available for this feature:

BLAST of MS021009 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145436.1	7.1e-80	100.00	SKP1-like protein 1A [Momordica charantia]	[more]
XP_022965297.1	1.5e-74	92.90	SKP1-like protein 1A [Cucurbita maxima] >KAG6577790.1 SKP1-like protein 1A, part...	[more]
XP_022923340.1	4.5e-74	92.26	SKP1-like protein 1A [Cucurbita moschata]	[more]
XP_038903121.1	1.3e-73	91.61	SKP1-like protein 1A [Benincasa hispida]	[more]
XP_023553541.1	2.2e-73	92.26	SKP1-like protein 1A [Cucurbita pepo subsp. pepo]	[more]

BLAST of MS021009 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39255	5.0e-68	80.50	SKP1-like protein 1A OS=Arabidopsis thaliana OX=3702 GN=SKP1A PE=1 SV=1	[more]
Q9FHW7	6.1e-66	76.02	SKP1-like protein 1B OS=Arabidopsis thaliana OX=3702 GN=SKP1B PE=1 SV=1	[more]
Q6PL11	1.8e-65	78.31	SKP1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP1 PE=1 SV=1	[more]
Q651E8	5.5e-59	72.12	SKP1-like protein 20 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP20 PE=1 SV=1	[more]
O49484	1.0e-57	73.38	SKP1-like protein 11 OS=Arabidopsis thaliana OX=3702 GN=ASK11 PE=1 SV=1	[more]

BLAST of MS021009 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CWB0	3.5e-80	100.00	SKP1-like protein OS=Momordica charantia OX=3673 GN=LOC111014883 PE=3 SV=1	[more]
A0A6J1HJY3	7.4e-75	92.90	SKP1-like protein OS=Cucurbita maxima OX=3661 GN=LOC111465205 PE=3 SV=1	[more]
A0A6J1EBI5	2.2e-74	92.26	SKP1-like protein OS=Cucurbita moschata OX=3662 GN=LOC111431062 PE=3 SV=1	[more]
A0A2I4EKZ9	4.5e-72	90.32	SKP1-like protein OS=Juglans regia OX=51240 GN=LOC109015676 PE=3 SV=1	[more]
A0A5N6QXB4	1.0e-71	89.68	SKP1-like protein OS=Carpinus fangiana OX=176857 GN=FH972_007010 PE=3 SV=1	[more]

BLAST of MS021009 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75950.1	3.5e-69	80.50	S phase kinase-associated protein 1	[more]
AT5G42190.1	4.3e-67	76.02	E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein	[more]
AT4G34210.1	7.4e-59	73.38	SKP1-like 11	[more]
AT4G34470.1	1.6e-58	72.73	SKP1-like 12	[more]
AT1G20140.1	5.3e-57	68.13	SKP1-like 4	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001232	S-phase kinase-associated protein 1-like	SMART	SM00512	skp1_3	coord: 4..105 e-value: 3.4E-53 score: 192.7
IPR011333	SKP1/BTB/POZ domain superfamily	GENE3D	3.30.710.10	Potassium Channel Kv1.1; Chain A	coord: 1..155 e-value: 1.1E-75 score: 255.2
IPR011333	SKP1/BTB/POZ domain superfamily	SUPERFAMILY	54695	POZ domain	coord: 6..66
IPR016072	SKP1 component, dimerisation	PFAM	PF01466	Skp1	coord: 106..153 e-value: 5.9E-30 score: 103.1
IPR016897	S-phase kinase-associated protein 1	PIRSF	PIRSF028729	SCF_Skp	coord: 1..155 e-value: 2.8E-68 score: 226.8
IPR016897	S-phase kinase-associated protein 1	PANTHER	PTHR11165	SKP1	coord: 1..155
IPR016073	SKP1 component, POZ domain	PFAM	PF03931	Skp1_POZ	coord: 5..64 e-value: 2.8E-29 score: 101.1
None	No IPR available	PANTHER	PTHR11165:SF145	PUTATIVE-RELATED	coord: 1..155
None	No IPR available	CDD	cd18322	BTB_POZ_SKP1	coord: 6..120 e-value: 1.14497E-60 score: 181.251
IPR036296	SKP1-like, dimerisation domain superfamily	SUPERFAMILY	81382	Skp1 dimerisation domain-like	coord: 78..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS021009.1	MS021009.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process