MS020727 (gene) Bitter gourd (TR) v1

Overview


Name	MS020727
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Cytochrome b
Location	scaffold178: 237282 .. 237356 (+)
RNA-Seq Expression	MS020727
Synteny	MS020727

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGAGCAATCTTAGTTATTGGTGGGGGTTCGATCCGTTAGCAGGTCTTTGTTTAGTCATTCAGATAGTTACTGGC

mRNA sequence

CCGAGCAATCTTAGTTATTGGTGGGGGTTCGATCCGTTAGCAGGTCTTTGTTTAGTCATTCAGATAGTTACTGGC

Coding sequence (CDS)

CCGAGCAATCTTAGTTATTGGTGGGGGTTCGATCCGTTAGCAGGTCTTTGTTTAGTCATTCAGATAGTTACTGGC

Protein sequence

PSNLSYWWGFDPLAGLCLVIQIVTG

Homology

[Close]

BLAST of MS020727 vs. NCBI nr
Match: YP_002608212.1 (apocytochrome b [Carica papaya] >ACB20501.1 apocytochrome b [Carica papaya])

HSP 1 Score: 58.2 bits (139), Expect = 1.2e-05
Identity = 24/25 (96.00%), Postives = 24/25 (96.00%), Query Frame = 0


Query: 1  PSNLSYWWGFDPLAGLCLVIQIVTG 26
          PSNLSYWWGF PLAGLCLVIQIVTG
Sbjct: 29 PSNLSYWWGFGPLAGLCLVIQIVTG 53

[Close]

BLAST of MS020727 vs. NCBI nr
Match: ABS10734.1 (apocytochrome b, partial [Humiria balsamifera])

HSP 1 Score: 58.2 bits (139), Expect = 1.2e-05
Identity = 24/25 (96.00%), Postives = 24/25 (96.00%), Query Frame = 0


Query: 1  PSNLSYWWGFDPLAGLCLVIQIVTG 26
          PSNLSYWWGF PLAGLCLVIQIVTG
Sbjct: 22 PSNLSYWWGFGPLAGLCLVIQIVTG 46

[Close]

BLAST of MS020727 vs. NCBI nr
Match: QKO26573.1 (apocytochrome b [Cyclanthus bipartitus])

HSP 1 Score: 58.2 bits (139), Expect = 1.2e-05
Identity = 24/25 (96.00%), Postives = 24/25 (96.00%), Query Frame = 0


Query: 1  PSNLSYWWGFDPLAGLCLVIQIVTG 26
          PSNLSYWWGF PLAGLCLVIQIVTG
Sbjct: 29 PSNLSYWWGFGPLAGLCLVIQIVTG 53

[Close]

BLAST of MS020727 vs. NCBI nr
Match: ACV71598.1 (apocytochrome b, partial [Elatine hexandra])

HSP 1 Score: 58.2 bits (139), Expect = 1.2e-05
Identity = 24/25 (96.00%), Postives = 24/25 (96.00%), Query Frame = 0


Query: 1  PSNLSYWWGFDPLAGLCLVIQIVTG 26
          PSNLSYWWGF PLAGLCLVIQIVTG
Sbjct: 22 PSNLSYWWGFGPLAGLCLVIQIVTG 46

[Close]

BLAST of MS020727 vs. NCBI nr
Match: ABK91486.1 (apocytochrome b, partial [Trichopus zeylanicus])

HSP 1 Score: 58.2 bits (139), Expect = 1.2e-05
Identity = 24/25 (96.00%), Postives = 24/25 (96.00%), Query Frame = 0


Query: 1  PSNLSYWWGFDPLAGLCLVIQIVTG 26
          PSNLSYWWGF PLAGLCLVIQIVTG
Sbjct: 18 PSNLSYWWGFGPLAGLCLVIQIVTG 42

[Close]

BLAST of MS020727 vs. ExPASy Swiss-Prot
Match: P42792 (Cytochrome b OS=Arabidopsis thaliana OX=3702 GN=MT-CYB PE=1 SV=2)

HSP 1 Score: 57.4 bits (137), Expect = 2.7e-08
Identity = 23/25 (92.00%), Postives = 24/25 (96.00%), Query Frame = 0


Query: 1  PSNLSYWWGFDPLAGLCLVIQIVTG 26
          PSNLSYWWGF PLAG+CLVIQIVTG
Sbjct: 29 PSNLSYWWGFGPLAGICLVIQIVTG 53

[Close]

BLAST of MS020727 vs. ExPASy Swiss-Prot
Match: P49390 (Cytochrome b (Fragment) OS=Brassica napus OX=3708 GN=MT-CYB PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.7e-08
Identity = 23/25 (92.00%), Postives = 24/25 (96.00%), Query Frame = 0


Query: 1  PSNLSYWWGFDPLAGLCLVIQIVTG 26
          PSNLSYWWGF PLAG+CLVIQIVTG
Sbjct: 29 PSNLSYWWGFGPLAGICLVIQIVTG 53

[Close]

BLAST of MS020727 vs. ExPASy Swiss-Prot
Match: P09843 (Cytochrome b OS=Oenothera berteroana OX=3950 GN=MT-CYB PE=2 SV=4)

HSP 1 Score: 54.3 bits (129), Expect = 2.3e-07
Identity = 22/25 (88.00%), Postives = 23/25 (92.00%), Query Frame = 0


Query: 1  PSNLSYWWGFDPLAGLCLVIQIVTG 26
          PSNLSYWWGF  LAG+CLVIQIVTG
Sbjct: 30 PSNLSYWWGFGSLAGICLVIQIVTG 54

[Close]

BLAST of MS020727 vs. ExPASy Swiss-Prot
Match: P0C524 (Cytochrome b OS=Oryza sativa subsp. japonica OX=39947 GN=MT-CYB PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.3e-07
Identity = 22/25 (88.00%), Postives = 23/25 (92.00%), Query Frame = 0


Query: 1  PSNLSYWWGFDPLAGLCLVIQIVTG 26
          PSNLSYWWGF  LAG+CLVIQIVTG
Sbjct: 29 PSNLSYWWGFGSLAGICLVIQIVTG 53

[Close]

BLAST of MS020727 vs. ExPASy Swiss-Prot
Match: Q9ZZT8 (Cytochrome b OS=Pisum sativum OX=3888 GN=MT-CYB PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.3e-07
Identity = 22/25 (88.00%), Postives = 23/25 (92.00%), Query Frame = 0


Query: 1  PSNLSYWWGFDPLAGLCLVIQIVTG 26
          PSNLSYWWGF  LAG+CLVIQIVTG
Sbjct: 29 PSNLSYWWGFGSLAGICLVIQIVTG 53

[Close]

BLAST of MS020727 vs. ExPASy TrEMBL
Match: Q7YH73 (Cytochrome b OS=Cucumis sativus OX=3659 GN=cob PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.9e-06
Identity = 24/25 (96.00%), Postives = 24/25 (96.00%), Query Frame = 0


Query: 1  PSNLSYWWGFDPLAGLCLVIQIVTG 26
          PSNLSYWWGF PLAGLCLVIQIVTG
Sbjct: 29 PSNLSYWWGFGPLAGLCLVIQIVTG 53

[Close]

BLAST of MS020727 vs. ExPASy TrEMBL
Match: A0A0X8GIV6 (Cytochrome b OS=Ceanothus herbaceus OX=73683 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.9e-06
Identity = 24/25 (96.00%), Postives = 24/25 (96.00%), Query Frame = 0


Query: 1  PSNLSYWWGFDPLAGLCLVIQIVTG 26
          PSNLSYWWGF PLAGLCLVIQIVTG
Sbjct: 29 PSNLSYWWGFGPLAGLCLVIQIVTG 53

[Close]

BLAST of MS020727 vs. ExPASy TrEMBL
Match: B9U3N1 (Cytochrome b OS=Carica papaya OX=3649 GN=cob PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.9e-06
Identity = 24/25 (96.00%), Postives = 24/25 (96.00%), Query Frame = 0


Query: 1  PSNLSYWWGFDPLAGLCLVIQIVTG 26
          PSNLSYWWGF PLAGLCLVIQIVTG
Sbjct: 29 PSNLSYWWGFGPLAGLCLVIQIVTG 53

[Close]

BLAST of MS020727 vs. ExPASy TrEMBL
Match: A0A7D6J266 (Cytochrome b OS=Luffa acutangula OX=56866 GN=cob PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.9e-06
Identity = 24/25 (96.00%), Postives = 24/25 (96.00%), Query Frame = 0


Query: 1  PSNLSYWWGFDPLAGLCLVIQIVTG 26
          PSNLSYWWGF PLAGLCLVIQIVTG
Sbjct: 29 PSNLSYWWGFGPLAGLCLVIQIVTG 53

[Close]

BLAST of MS020727 vs. ExPASy TrEMBL
Match: A0A5A7VP81 (Cytochrome b OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43700G00010 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.9e-06
Identity = 24/25 (96.00%), Postives = 24/25 (96.00%), Query Frame = 0


Query: 1  PSNLSYWWGFDPLAGLCLVIQIVTG 26
          PSNLSYWWGF PLAGLCLVIQIVTG
Sbjct: 29 PSNLSYWWGFGPLAGLCLVIQIVTG 53

[Close]

BLAST of MS020727 vs. TAIR 10
Match: AT2G07727.1 (Di-haem cytochrome, transmembrane;Cytochrome b/b6, C-terminal )

HSP 1 Score: 57.4 bits (137), Expect = 1.9e-09
Identity = 23/25 (92.00%), Postives = 24/25 (96.00%), Query Frame = 0


Query: 1  PSNLSYWWGFDPLAGLCLVIQIVTG 26
          PSNLSYWWGF PLAG+CLVIQIVTG
Sbjct: 29 PSNLSYWWGFGPLAGICLVIQIVTG 53

[Close]

BLAST of MS020727 vs. TAIR 10
Match: ATMG00220.1 (apocytochrome b )

HSP 1 Score: 57.4 bits (137), Expect = 1.9e-09
Identity = 23/25 (92.00%), Postives = 24/25 (96.00%), Query Frame = 0


Query: 1  PSNLSYWWGFDPLAGLCLVIQIVTG 26
          PSNLSYWWGF PLAG+CLVIQIVTG
Sbjct: 29 PSNLSYWWGFGPLAGICLVIQIVTG 53

[Close]

BLAST of MS020727 vs. TAIR 10
Match: AT2G07718.1 (Cytochrome b/b6 protein )

HSP 1 Score: 39.3 bits (90), Expect = 5.4e-04
Identity = 14/19 (73.68%), Postives = 16/19 (84.21%), Query Frame = 0


Query: 1  PSNLSYWWGFDPLAGLCLV 20
          PSNLSYWWGF PLAG  ++
Sbjct: 29 PSNLSYWWGFGPLAGTMIL 47

[Close]

BLAST of MS020727 vs. TAIR 10
Match: ATMG00590.1 (Cytochrome b/b6 protein )

HSP 1 Score: 39.3 bits (90), Expect = 5.4e-04
Identity = 14/19 (73.68%), Postives = 16/19 (84.21%), Query Frame = 0


Query: 1  PSNLSYWWGFDPLAGLCLV 20
          PSNLSYWWGF PLAG  ++
Sbjct: 29 PSNLSYWWGFGPLAGTMIL 47

The following BLAST results are available for this feature:

BLAST of MS020727 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_002608212.1	1.2e-05	96.00	apocytochrome b [Carica papaya] >ACB20501.1 apocytochrome b [Carica papaya]	[more]
ABS10734.1	1.2e-05	96.00	apocytochrome b, partial [Humiria balsamifera]	[more]
QKO26573.1	1.2e-05	96.00	apocytochrome b [Cyclanthus bipartitus]	[more]
ACV71598.1	1.2e-05	96.00	apocytochrome b, partial [Elatine hexandra]	[more]
ABK91486.1	1.2e-05	96.00	apocytochrome b, partial [Trichopus zeylanicus]	[more]

BLAST of MS020727 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P42792	2.7e-08	92.00	Cytochrome b OS=Arabidopsis thaliana OX=3702 GN=MT-CYB PE=1 SV=2	[more]
P49390	2.7e-08	92.00	Cytochrome b (Fragment) OS=Brassica napus OX=3708 GN=MT-CYB PE=3 SV=1	[more]
P09843	2.3e-07	88.00	Cytochrome b OS=Oenothera berteroana OX=3950 GN=MT-CYB PE=2 SV=4	[more]
P0C524	2.3e-07	88.00	Cytochrome b OS=Oryza sativa subsp. japonica OX=39947 GN=MT-CYB PE=2 SV=1	[more]
Q9ZZT8	2.3e-07	88.00	Cytochrome b OS=Pisum sativum OX=3888 GN=MT-CYB PE=3 SV=1	[more]

BLAST of MS020727 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
Q7YH73	5.9e-06	96.00	Cytochrome b OS=Cucumis sativus OX=3659 GN=cob PE=3 SV=1	[more]
A0A0X8GIV6	5.9e-06	96.00	Cytochrome b OS=Ceanothus herbaceus OX=73683 PE=3 SV=1	[more]
B9U3N1	5.9e-06	96.00	Cytochrome b OS=Carica papaya OX=3649 GN=cob PE=3 SV=1	[more]
A0A7D6J266	5.9e-06	96.00	Cytochrome b OS=Luffa acutangula OX=56866 GN=cob PE=3 SV=1	[more]
A0A5A7VP81	5.9e-06	96.00	Cytochrome b OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43700G00010...	[more]

BLAST of MS020727 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G07727.1	1.9e-09	92.00	Di-haem cytochrome, transmembrane;Cytochrome b/b6, C-terminal	[more]
ATMG00220.1	1.9e-09	92.00	apocytochrome b	[more]
AT2G07718.1	5.4e-04	73.68	Cytochrome b/b6 protein	[more]
ATMG00590.1	5.4e-04	73.68	Cytochrome b/b6 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016174	Di-haem cytochrome, transmembrane	SUPERFAMILY	81342	Transmembrane di-heme cytochromes	coord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS020727.1	MS020727.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022904	respiratory electron transport chain
cellular_component	GO:0016020	membrane