MS020725 (gene) Bitter gourd (TR) v1

Overview


Name	MS020725
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	mediator of RNA polymerase II transcription subunit 19a-like
Location	scaffold178: 205368 .. 206483 (+)
RNA-Seq Expression	MS020725
Synteny	MS020725

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGACCAAGGGAATTGACTGGTGCCGTGGATCTAATAAGTCACTACAAACTGTTACCTCACCATGAGTTTTTCTGCAAGAAGTCACTTCCATTATCAATTTCAGATACACATTATCTTCATAACGTGGTTGGAGACACAGAAATTAGAAAAGGAGAAGGGATGCAATTGAATCAACTCATCCAGAATACTTCTTACCCTAGAGAGACTAATGCCCGCATACAGCCATTTGACCAAGATATTCTCATAGAAGCCTTCCAACTGAGGGAAACTGGTCCTGTTGATCTGCCTCCTGTAAGAATTCTATTATTAAAATGGTTAAAATCAGCCCCTTTTTTCCATTAGCTGGAACTTAGATGTCACCAAGGGATTGGGTCCGATTATCAGCATTTCTCATTGTGATTCTTTTCTCTTCAACTGATGGCTCATTTATTTTTCTTTGGTAAGGCCGAGAAAGGTGTTCCAACTATTCCAGGGAAGTCAAAAAGTGAGTCCAAAGATAAGGAAAGAAAGCATAAGAAGCATAAAGACAGGGATAAGGAGAAGGATAGAGAGCATAAGAAGCACAAGCATCGTCATAAAGACCGAAGTAAGGATAAAGACAAGGATAAGAAGAGAGACAAAAGTGCCCATCACGAATCTGGTGCTGACCATTCAAAGAAGCATCATGAAAAGGTTGGACAACCTATACTCTTCTGCAGCTCCTTTGTAACTACTAAGATTAGAGAAAAATGGGATGGTTCAGGAGTAGGTTGTCATTGACCTTATGAACCTTTTAGTCTAGTTTATTATTGCAAGATTACATTTCTTGAAGCGCTTCCCTTTCATTGGCTTTTTTTCATTTGACCTGGATTATCGACTCCATAGCATGCTGTGAGGGCGGGAATTAAAAAGGATAAATGAGGGAATTATGAATGGCAATTATTGGTTTGTTTTGTTTCGTATTTTCTCCACTAAAAATTAAGGATTAAGTAATCTATTTGTGTTTTACCACCAAACTAATATACAATTTTTTGTGCATATAGCCCAAATGAGCTAATTATTAATTTCTAATTTCAGAAAAGGAAGCATGACGGAGAGGATGATATTAATGACATTCATAGGCACAAAAAAAGTAAG

mRNA sequence

GGACCAAGGGAATTGACTGGTGCCGTGGATCTAATAAGTCACTACAAACTGTTACCTCACCATGAGTTTTTCTGCAAGAAGTCACTTCCATTATCAATTTCAGATACACATTATCTTCATAACGTGGTTGGAGACACAGAAATTAGAAAAGGAGAAGGGATGCAATTGAATCAACTCATCCAGAATACTTCTTACCCTAGAGAGACTAATGCCCGCATACAGCCATTTGACCAAGATATTCTCATAGAAGCCTTCCAACTGAGGGAAACTGGTCCTGTTGATCTGCCTCCTGCCGAGAAAGGTGTTCCAACTATTCCAGGGAAGTCAAAAAGTGAGTCCAAAGATAAGGAAAGAAAGCATAAGAAGCATAAAGACAGGGATAAGGAGAAGGATAGAGAGCATAAGAAGCACAAGCATCGTCATAAAGACCGAAGTAAGGATAAAGACAAGGATAAGAAGAGAGACAAAAGTGCCCATCACGAATCTGGTGCTGACCATTCAAAGAAGCATCATGAAAAGAAAAGGAAGCATGACGGAGAGGATGATATTAATGACATTCATAGGCACAAAAAAAGTAAG

Coding sequence (CDS)

GGACCAAGGGAATTGACTGGTGCCGTGGATCTAATAAGTCACTACAAACTGTTACCTCACCATGAGTTTTTCTGCAAGAAGTCACTTCCATTATCAATTTCAGATACACATTATCTTCATAACGTGGTTGGAGACACAGAAATTAGAAAAGGAGAAGGGATGCAATTGAATCAACTCATCCAGAATACTTCTTACCCTAGAGAGACTAATGCCCGCATACAGCCATTTGACCAAGATATTCTCATAGAAGCCTTCCAACTGAGGGAAACTGGTCCTGTTGATCTGCCTCCTGCCGAGAAAGGTGTTCCAACTATTCCAGGGAAGTCAAAAAGTGAGTCCAAAGATAAGGAAAGAAAGCATAAGAAGCATAAAGACAGGGATAAGGAGAAGGATAGAGAGCATAAGAAGCACAAGCATCGTCATAAAGACCGAAGTAAGGATAAAGACAAGGATAAGAAGAGAGACAAAAGTGCCCATCACGAATCTGGTGCTGACCATTCAAAGAAGCATCATGAAAAGAAAAGGAAGCATGACGGAGAGGATGATATTAATGACATTCATAGGCACAAAAAAAGTAAG

Protein sequence

GPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRKGEGMQLNQLIQNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPPAEKGVPTIPGKSKSESKDKERKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKRDKSAHHESGADHSKKHHEKKRKHDGEDDINDIHRHKKSK

Homology

[Close]

BLAST of MS020725 vs. NCBI nr
Match: XP_022143549.1 (mediator of RNA polymerase II transcription subunit 19a-like isoform X2 [Momordica charantia] >XP_022143550.1 mediator of RNA polymerase II transcription subunit 19a-like isoform X2 [Momordica charantia] >XP_022143551.1 mediator of RNA polymerase II transcription subunit 19a-like isoform X2 [Momordica charantia] >XP_022143552.1 mediator of RNA polymerase II transcription subunit 19a-like isoform X2 [Momordica charantia] >XP_022143554.1 mediator of RNA polymerase II transcription subunit 19a-like isoform X2 [Momordica charantia])

HSP 1 Score: 366.7 bits (940), Expect = 1.2e-97
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   GPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRKGEGMQLNQLI 60
           GPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRKGEGMQLNQLI
Sbjct: 11  GPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRKGEGMQLNQLI 70

Query: 61  QNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPPAEKGVPTIPGKSKSESKDKERKH 120
           QNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPPAEKGVPTIPGKSKSESKDKERKH
Sbjct: 71  QNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPPAEKGVPTIPGKSKSESKDKERKH 130

Query: 121 KKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKRDKSAHHESGADHSKKHHEKKRKHDGE 180
           KKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKRDKSAHHESGADHSKKHHEKKRKHDGE
Sbjct: 131 KKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKRDKSAHHESGADHSKKHHEKKRKHDGE 190

Query: 181 DDINDIHRHKKSK 194
           DDINDIHRHKKSK
Sbjct: 191 DDINDIHRHKKSK 203

[Close]

BLAST of MS020725 vs. NCBI nr
Match: XP_022143555.1 (mediator of RNA polymerase II transcription subunit 19a-like isoform X3 [Momordica charantia])

HSP 1 Score: 364.4 bits (934), Expect = 6.1e-97
Identity = 191/192 (99.48%), Postives = 192/192 (100.00%), Query Frame = 0


Query: 1   GPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRKGEGMQLNQLI 60
           GPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRKGEGMQLNQLI
Sbjct: 11  GPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRKGEGMQLNQLI 70

Query: 61  QNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPPAEKGVPTIPGKSKSESKDKERKH 120
           QNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPPAEKGVPTIPGKSKSESKDKERKH
Sbjct: 71  QNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPPAEKGVPTIPGKSKSESKDKERKH 130

Query: 121 KKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKRDKSAHHESGADHSKKHHEKKRKHDGE 180
           KKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKRDKSAHHESGADHSKKHHEKKRKHDGE
Sbjct: 131 KKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKRDKSAHHESGADHSKKHHEKKRKHDGE 190

Query: 181 DDINDIHRHKKS 193
           DDINDIHRHKK+
Sbjct: 191 DDINDIHRHKKT 202

[Close]

BLAST of MS020725 vs. NCBI nr
Match: XP_022143547.1 (mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Momordica charantia] >XP_022143548.1 mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Momordica charantia])

HSP 1 Score: 364.4 bits (934), Expect = 6.1e-97
Identity = 191/192 (99.48%), Postives = 192/192 (100.00%), Query Frame = 0


Query: 1   GPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRKGEGMQLNQLI 60
           GPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRKGEGMQLNQLI
Sbjct: 11  GPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRKGEGMQLNQLI 70

Query: 61  QNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPPAEKGVPTIPGKSKSESKDKERKH 120
           QNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPPAEKGVPTIPGKSKSESKDKERKH
Sbjct: 71  QNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPPAEKGVPTIPGKSKSESKDKERKH 130

Query: 121 KKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKRDKSAHHESGADHSKKHHEKKRKHDGE 180
           KKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKRDKSAHHESGADHSKKHHEKKRKHDGE
Sbjct: 131 KKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKRDKSAHHESGADHSKKHHEKKRKHDGE 190

Query: 181 DDINDIHRHKKS 193
           DDINDIHRHKK+
Sbjct: 191 DDINDIHRHKKT 202

[Close]

BLAST of MS020725 vs. NCBI nr
Match: XP_038898851.1 (mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Benincasa hispida])

HSP 1 Score: 358.6 bits (919), Expect = 3.4e-95
Identity = 187/193 (96.89%), Postives = 192/193 (99.48%), Query Frame = 0


Query: 1   GPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRKGEGMQLNQLI 60
           GPRELTGAVDLISHYKLLPHH+FFCKKSLPLSISDTHYLHNVVGDTEIRKGEGMQLNQLI
Sbjct: 11  GPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDTEIRKGEGMQLNQLI 70

Query: 61  QNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPPAEKGVPTIPGKSKSESKDKERKH 120
           QNTSYPRETNARIQPFDQD+LIEAFQLRETGPVDLP AEKGVPTIPGKSKSESKDK+RKH
Sbjct: 71  QNTSYPRETNARIQPFDQDVLIEAFQLRETGPVDLPSAEKGVPTIPGKSKSESKDKDRKH 130

Query: 121 KKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKRDKSAHHESGADHSKKHHEKKRKHDGE 180
           KKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKK+DKSAHH+SGADHSKKHHEKKRKHDGE
Sbjct: 131 KKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKDKSAHHDSGADHSKKHHEKKRKHDGE 190

Query: 181 DDINDIHRHKKSK 194
           DDINDIHRHKKSK
Sbjct: 191 DDINDIHRHKKSK 203

[Close]

BLAST of MS020725 vs. NCBI nr
Match: XP_038898853.1 (mediator of RNA polymerase II transcription subunit 19a-like isoform X3 [Benincasa hispida])

HSP 1 Score: 356.3 bits (913), Expect = 1.7e-94
Identity = 185/192 (96.35%), Postives = 191/192 (99.48%), Query Frame = 0


Query: 1   GPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRKGEGMQLNQLI 60
           GPRELTGAVDLISHYKLLPHH+FFCKKSLPLSISDTHYLHNVVGDTEIRKGEGMQLNQLI
Sbjct: 11  GPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDTEIRKGEGMQLNQLI 70

Query: 61  QNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPPAEKGVPTIPGKSKSESKDKERKH 120
           QNTSYPRETNARIQPFDQD+LIEAFQLRETGPVDLP AEKGVPTIPGKSKSESKDK+RKH
Sbjct: 71  QNTSYPRETNARIQPFDQDVLIEAFQLRETGPVDLPSAEKGVPTIPGKSKSESKDKDRKH 130

Query: 121 KKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKRDKSAHHESGADHSKKHHEKKRKHDGE 180
           KKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKK+DKSAHH+SGADHSKKHHEKKRKHDGE
Sbjct: 131 KKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKDKSAHHDSGADHSKKHHEKKRKHDGE 190

Query: 181 DDINDIHRHKKS 193
           DDINDIHRHKK+
Sbjct: 191 DDINDIHRHKKN 202

[Close]

BLAST of MS020725 vs. ExPASy Swiss-Prot
Match: Q9FMP0 (Mediator of RNA polymerase II transcription subunit 19a OS=Arabidopsis thaliana OX=3702 GN=MED19A PE=1 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 1.2e-74
Identity = 150/197 (76.14%), Postives = 174/197 (88.32%), Query Frame = 0


Query: 1   GPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRKGEGMQLNQLI 60
           GPREL GA DLIS +KL+ HHEFFCKKSLP+S+SD+HYLHNVVGDTEIRKGEGMQL+QLI
Sbjct: 10  GPRELCGAADLISQFKLVQHHEFFCKKSLPVSLSDSHYLHNVVGDTEIRKGEGMQLDQLI 69

Query: 61  QNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPPAEKGVPTIPGKSKSESKDKERKH 120
           ++ S  RETN RIQPFD D L E+FQL +  PV+LPPAEKG PTIP KSKSESKD++RKH
Sbjct: 70  ESISQSRETNIRIQPFDIDELQESFQLNDMTPVELPPAEKGAPTIPSKSKSESKDRDRKH 129

Query: 121 KKHKDRDKEKDREHKKHKHRHKDRSKDKDKDK----KRDKSAHHESGADHSKKHHEKKRK 180
           KKHKDRDK+KDREHKKHKH+HKDRSKDKDKDK    K+DK+ HH+SG DHSKKHH+KKRK
Sbjct: 130 KKHKDRDKDKDREHKKHKHKHKDRSKDKDKDKDRDRKKDKNGHHDSG-DHSKKHHDKKRK 189

Query: 181 HDGEDDINDIHRHKKSK 194
           HDG++D+ND+ RHKK+K
Sbjct: 190 HDGDEDLNDVQRHKKNK 205

[Close]

BLAST of MS020725 vs. ExPASy Swiss-Prot
Match: Q6NQD9 (Probable mediator of RNA polymerase II transcription subunit 19b OS=Arabidopsis thaliana OX=3702 GN=MED19B PE=2 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 6.6e-62
Identity = 138/194 (71.13%), Postives = 159/194 (81.96%), Query Frame = 0


Query: 1   GPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRKGEGMQLNQLI 60
           GPREL GA+DLI+ YKLLPHHEFFCK+SLP S+SD HYLHN+VGDTEIRKGEGMQL+QLI
Sbjct: 10  GPRELGGALDLITQYKLLPHHEFFCKRSLPESLSDAHYLHNLVGDTEIRKGEGMQLDQLI 69

Query: 61  QNTSY-PRETNARIQPFDQDILIEAFQLRETGPVDLPPAEKGVPTIPGKSKSESKDKERK 120
            N S   R+TNARIQPF  D L EAF+L +T PV+LPPAEKG PT   KSKSESKDK+RK
Sbjct: 70  PNASLSSRDTNARIQPFVLDELKEAFELNDTAPVELPPAEKGAPTTVSKSKSESKDKDRK 129

Query: 121 HKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKRDKSAHHESGADHSKKHHEKKRKHDG 180
           H+KHKD+ KEKDREHKKHKH+HKDR KDKDKDK RDK    +SG      HH+KKRK++G
Sbjct: 130 HRKHKDK-KEKDREHKKHKHKHKDRIKDKDKDKDRDKK-KEKSG------HHDKKRKNNG 189

Query: 181 EDDINDIHRHKKSK 194
            +D +D+ RHKKSK
Sbjct: 190 TEDADDVQRHKKSK 195

[Close]

BLAST of MS020725 vs. ExPASy TrEMBL
Match: A0A6J1CP39 (mediator of RNA polymerase II transcription subunit 19a-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111013422 PE=4 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 6.0e-98
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   GPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRKGEGMQLNQLI 60
           GPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRKGEGMQLNQLI
Sbjct: 11  GPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRKGEGMQLNQLI 70

Query: 61  QNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPPAEKGVPTIPGKSKSESKDKERKH 120
           QNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPPAEKGVPTIPGKSKSESKDKERKH
Sbjct: 71  QNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPPAEKGVPTIPGKSKSESKDKERKH 130

Query: 121 KKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKRDKSAHHESGADHSKKHHEKKRKHDGE 180
           KKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKRDKSAHHESGADHSKKHHEKKRKHDGE
Sbjct: 131 KKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKRDKSAHHESGADHSKKHHEKKRKHDGE 190

Query: 181 DDINDIHRHKKSK 194
           DDINDIHRHKKSK
Sbjct: 191 DDINDIHRHKKSK 203

[Close]

BLAST of MS020725 vs. ExPASy TrEMBL
Match: A0A6J1CR53 (mediator of RNA polymerase II transcription subunit 19a-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111013422 PE=4 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 3.0e-97
Identity = 191/192 (99.48%), Postives = 192/192 (100.00%), Query Frame = 0


Query: 1   GPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRKGEGMQLNQLI 60
           GPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRKGEGMQLNQLI
Sbjct: 11  GPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRKGEGMQLNQLI 70

Query: 61  QNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPPAEKGVPTIPGKSKSESKDKERKH 120
           QNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPPAEKGVPTIPGKSKSESKDKERKH
Sbjct: 71  QNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPPAEKGVPTIPGKSKSESKDKERKH 130

Query: 121 KKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKRDKSAHHESGADHSKKHHEKKRKHDGE 180
           KKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKRDKSAHHESGADHSKKHHEKKRKHDGE
Sbjct: 131 KKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKRDKSAHHESGADHSKKHHEKKRKHDGE 190

Query: 181 DDINDIHRHKKS 193
           DDINDIHRHKK+
Sbjct: 191 DDINDIHRHKKT 202

[Close]

BLAST of MS020725 vs. ExPASy TrEMBL
Match: A0A6J1CP43 (mediator of RNA polymerase II transcription subunit 19a-like isoform X3 OS=Momordica charantia OX=3673 GN=LOC111013422 PE=4 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 3.0e-97
Identity = 191/192 (99.48%), Postives = 192/192 (100.00%), Query Frame = 0


Query: 1   GPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRKGEGMQLNQLI 60
           GPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRKGEGMQLNQLI
Sbjct: 11  GPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRKGEGMQLNQLI 70

Query: 61  QNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPPAEKGVPTIPGKSKSESKDKERKH 120
           QNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPPAEKGVPTIPGKSKSESKDKERKH
Sbjct: 71  QNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPPAEKGVPTIPGKSKSESKDKERKH 130

Query: 121 KKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKRDKSAHHESGADHSKKHHEKKRKHDGE 180
           KKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKRDKSAHHESGADHSKKHHEKKRKHDGE
Sbjct: 131 KKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKRDKSAHHESGADHSKKHHEKKRKHDGE 190

Query: 181 DDINDIHRHKKS 193
           DDINDIHRHKK+
Sbjct: 191 DDINDIHRHKKT 202

[Close]

BLAST of MS020725 vs. ExPASy TrEMBL
Match: A0A1S4DWJ4 (mediator of RNA polymerase II transcription subunit 19a-like OS=Cucumis melo OX=3656 GN=LOC103489709 PE=4 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 3.1e-94
Identity = 186/193 (96.37%), Postives = 190/193 (98.45%), Query Frame = 0


Query: 1   GPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRKGEGMQLNQLI 60
           GPRELTGAVDLISHYKLLPHH+FFCKKSLPLSISDTHYLHNVVGDTEIRKGEGMQLNQLI
Sbjct: 11  GPRELTGAVDLISHYKLLPHHDFFCKKSLPLSISDTHYLHNVVGDTEIRKGEGMQLNQLI 70

Query: 61  QNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPPAEKGVPTIPGKSKSESKDKERKH 120
           QNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLP AEKGVPTIPGKSKSESKDK+RKH
Sbjct: 71  QNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPSAEKGVPTIPGKSKSESKDKDRKH 130

Query: 121 KKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKRDKSAHHESGADHSKKHHEKKRKHDGE 180
           KKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKK+DKS H +SGADHSKKHHEKKRKHDGE
Sbjct: 131 KKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKKDKSGHQDSGADHSKKHHEKKRKHDGE 190

Query: 181 DDINDIHRHKKSK 194
           DDINDIHRHKKSK
Sbjct: 191 DDINDIHRHKKSK 203

[Close]

BLAST of MS020725 vs. ExPASy TrEMBL
Match: A0A6J1H5Q1 (mediator of RNA polymerase II transcription subunit 19a-like OS=Cucurbita moschata OX=3662 GN=LOC111460791 PE=4 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 4.0e-94
Identity = 185/193 (95.85%), Postives = 191/193 (98.96%), Query Frame = 0


Query: 1   GPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRKGEGMQLNQLI 60
           GPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRKGEGMQLNQLI
Sbjct: 11  GPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRKGEGMQLNQLI 70

Query: 61  QNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPPAEKGVPTIPGKSKSESKDKERKH 120
           QN SYPRETNARIQPFDQDILIEAFQLRETGPV+LPPAEKGVPTIPGKSKSESKDK+RKH
Sbjct: 71  QNPSYPRETNARIQPFDQDILIEAFQLRETGPVELPPAEKGVPTIPGKSKSESKDKDRKH 130

Query: 121 KKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKRDKSAHHESGADHSKKHHEKKRKHDGE 180
           KKHKDRDK+KDREHKKHKHRHKDRSKDKDKDKK+DKSAH +SGADHSKKHHEKKRKHDGE
Sbjct: 131 KKHKDRDKDKDREHKKHKHRHKDRSKDKDKDKKKDKSAHQDSGADHSKKHHEKKRKHDGE 190

Query: 181 DDINDIHRHKKSK 194
           DDINDIHRHKK+K
Sbjct: 191 DDINDIHRHKKNK 203

[Close]

BLAST of MS020725 vs. TAIR 10
Match: AT5G12230.1 (MED19A; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19480.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 280.8 bits (717), Expect = 8.3e-76
Identity = 150/197 (76.14%), Postives = 174/197 (88.32%), Query Frame = 0


Query: 1   GPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRKGEGMQLNQLI 60
           GPREL GA DLIS +KL+ HHEFFCKKSLP+S+SD+HYLHNVVGDTEIRKGEGMQL+QLI
Sbjct: 10  GPRELCGAADLISQFKLVQHHEFFCKKSLPVSLSDSHYLHNVVGDTEIRKGEGMQLDQLI 69

Query: 61  QNTSYPRETNARIQPFDQDILIEAFQLRETGPVDLPPAEKGVPTIPGKSKSESKDKERKH 120
           ++ S  RETN RIQPFD D L E+FQL +  PV+LPPAEKG PTIP KSKSESKD++RKH
Sbjct: 70  ESISQSRETNIRIQPFDIDELQESFQLNDMTPVELPPAEKGAPTIPSKSKSESKDRDRKH 129

Query: 121 KKHKDRDKEKDREHKKHKHRHKDRSKDKDKDK----KRDKSAHHESGADHSKKHHEKKRK 180
           KKHKDRDK+KDREHKKHKH+HKDRSKDKDKDK    K+DK+ HH+SG DHSKKHH+KKRK
Sbjct: 130 KKHKDRDKDKDREHKKHKHKHKDRSKDKDKDKDRDRKKDKNGHHDSG-DHSKKHHDKKRK 189

Query: 181 HDGEDDINDIHRHKKSK 194
           HDG++D+ND+ RHKK+K
Sbjct: 190 HDGDEDLNDVQRHKKNK 205

[Close]

BLAST of MS020725 vs. TAIR 10
Match: AT5G19480.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12230.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 238.4 bits (607), Expect = 4.7e-63
Identity = 138/194 (71.13%), Postives = 159/194 (81.96%), Query Frame = 0


Query: 1   GPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRKGEGMQLNQLI 60
           GPREL GA+DLI+ YKLLPHHEFFCK+SLP S+SD HYLHN+VGDTEIRKGEGMQL+QLI
Sbjct: 10  GPRELGGALDLITQYKLLPHHEFFCKRSLPESLSDAHYLHNLVGDTEIRKGEGMQLDQLI 69

Query: 61  QNTSY-PRETNARIQPFDQDILIEAFQLRETGPVDLPPAEKGVPTIPGKSKSESKDKERK 120
            N S   R+TNARIQPF  D L EAF+L +T PV+LPPAEKG PT   KSKSESKDK+RK
Sbjct: 70  PNASLSSRDTNARIQPFVLDELKEAFELNDTAPVELPPAEKGAPTTVSKSKSESKDKDRK 129

Query: 121 HKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKRDKSAHHESGADHSKKHHEKKRKHDG 180
           H+KHKD+ KEKDREHKKHKH+HKDR KDKDKDK RDK    +SG      HH+KKRK++G
Sbjct: 130 HRKHKDK-KEKDREHKKHKHKHKDRIKDKDKDKDRDKK-KEKSG------HHDKKRKNNG 189

Query: 181 EDDINDIHRHKKSK 194
            +D +D+ RHKKSK
Sbjct: 190 TEDADDVQRHKKSK 195

[Close]

BLAST of MS020725 vs. TAIR 10
Match: AT5G19480.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12230.1); Has 15754 Blast hits to 7644 proteins in 441 species: Archae - 6; Bacteria - 451; Metazoa - 7628; Fungi - 1448; Plants - 1196; Viruses - 38; Other Eukaryotes - 4987 (source: NCBI BLink). )

HSP 1 Score: 238.4 bits (607), Expect = 4.7e-63
Identity = 138/194 (71.13%), Postives = 159/194 (81.96%), Query Frame = 0


Query: 1   GPRELTGAVDLISHYKLLPHHEFFCKKSLPLSISDTHYLHNVVGDTEIRKGEGMQLNQLI 60
           GPREL GA+DLI+ YKLLPHHEFFCK+SLP S+SD HYLHN+VGDTEIRKGEGMQL+QLI
Sbjct: 10  GPRELGGALDLITQYKLLPHHEFFCKRSLPESLSDAHYLHNLVGDTEIRKGEGMQLDQLI 69

Query: 61  QNTSY-PRETNARIQPFDQDILIEAFQLRETGPVDLPPAEKGVPTIPGKSKSESKDKERK 120
            N S   R+TNARIQPF  D L EAF+L +T PV+LPPAEKG PT   KSKSESKDK+RK
Sbjct: 70  PNASLSSRDTNARIQPFVLDELKEAFELNDTAPVELPPAEKGAPTTVSKSKSESKDKDRK 129

Query: 121 HKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKKRDKSAHHESGADHSKKHHEKKRKHDG 180
           H+KHKD+ KEKDREHKKHKH+HKDR KDKDKDK RDK    +SG      HH+KKRK++G
Sbjct: 130 HRKHKDK-KEKDREHKKHKHKHKDRIKDKDKDKDRDKK-KEKSG------HHDKKRKNNG 189

Query: 181 EDDINDIHRHKKSK 194
            +D +D+ RHKKSK
Sbjct: 190 TEDADDVQRHKKSK 195

The following BLAST results are available for this feature:

BLAST of MS020725 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143549.1	1.2e-97	100.00	mediator of RNA polymerase II transcription subunit 19a-like isoform X2 [Momordi...	[more]
XP_022143555.1	6.1e-97	99.48	mediator of RNA polymerase II transcription subunit 19a-like isoform X3 [Momordi...	[more]
XP_022143547.1	6.1e-97	99.48	mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Momordi...	[more]
XP_038898851.1	3.4e-95	96.89	mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Beninca...	[more]
XP_038898853.1	1.7e-94	96.35	mediator of RNA polymerase II transcription subunit 19a-like isoform X3 [Beninca...	[more]

BLAST of MS020725 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMP0	1.2e-74	76.14	Mediator of RNA polymerase II transcription subunit 19a OS=Arabidopsis thaliana ...	[more]
Q6NQD9	6.6e-62	71.13	Probable mediator of RNA polymerase II transcription subunit 19b OS=Arabidopsis ...	[more]

BLAST of MS020725 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CP39	6.0e-98	100.00	mediator of RNA polymerase II transcription subunit 19a-like isoform X2 OS=Momor...	[more]
A0A6J1CR53	3.0e-97	99.48	mediator of RNA polymerase II transcription subunit 19a-like isoform X1 OS=Momor...	[more]
A0A6J1CP43	3.0e-97	99.48	mediator of RNA polymerase II transcription subunit 19a-like isoform X3 OS=Momor...	[more]
A0A1S4DWJ4	3.1e-94	96.37	mediator of RNA polymerase II transcription subunit 19a-like OS=Cucumis melo OX=...	[more]
A0A6J1H5Q1	4.0e-94	95.85	mediator of RNA polymerase II transcription subunit 19a-like OS=Cucurbita moscha...	[more]

BLAST of MS020725 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G12230.1	8.3e-76	76.14	MED19A; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19...	[more]
AT5G19480.1	4.7e-63	71.13	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G19480.2	4.7e-63	71.13	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..193
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 133..147
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 148..193
None	No IPR available	PANTHER	PTHR22536:SF4	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 19A-LIKE ISOFORM X1	coord: 1..193
IPR019403	Mediator complex, subunit Med19, metazoa	PANTHER	PTHR22536	LUNG CANCER METASTASIS-RELATED LCMR1 PROTEIN	coord: 1..193

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS020725.1	MS020725.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0003712	transcription coregulator activity