MS020722 (gene) Bitter gourd (TR) v1

Overview


Name	MS020722
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Poly(A)-specific ribonuclease PARN-like
Location	scaffold178: 100185 .. 116034 (-)
RNA-Seq Expression	MS020722
Synteny	MS020722

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTCGTTCCTCATCTCTCCACTTCCACAGACGCCTCTACAGTACCTCCAATCAATGGAGCGTTCGTCAAGTTCGCAAATCCGATTTCCATGGCTGCTTGGGGGACCTGGACAGCCACATCTCCGCCTCCGACTTCATCGCTCTCTCTCTCCAGAAGACGGGTTCTTCTTCATTCCCTTGGCACCGCCTTCAGCCCTTTGACACCTCTCACACCGCCTATTGCAAGGCCAAGTACGCCGCCGAGAAGTTTCAGATCCTCCAATTCGCTCTCTGCCCCTTTTCTGTCCGGGAATCCAAGCTTATCGCTCATCCGTGAGTGCCACCGCCGCTTCTCTTCATGTTTGGATGTTTGGAGTTTTGTACGCTGGGGCAGGGATGGGGGATGGGGGATTTAGAACTCTTTAGTGTTGGTTAAATTTTCTGCACTTGCAATAGATTTGGTTGTTTATTGACATATAGCTGATGTTGAGAGAGAACGTGAAAAATGGAACTAAACAATAGTTGGGAATGCTATCAAAGTCCGCCTAAATAAGGAGAATAAGGAGAATATCATAGTATATAAGCGAGAGACAATATCTCAATTGGACTAAATCCTTTTGGGTGAAACTTAATCCTGGAAGATGTAGTTATGGTGTAATCTACGGTTGAGCTCTATCGGACAGGTAGTGTGCTTGGGAGAAGAGGAGTTGGCTTGTTGACTATTTAAGGGAGGTTTGGTGGTATTTTGTATGAGAGGAAGATTGTTGTGGATGTGATCAAAGTCCCACGTTAACTAGATAAGGGGAATTTAAGAGGATTTTGCCCAATCTGCTAGAAATTTGGAGGGTCCATCGTCCCTAACAACAATGTTTATTTCTCTGCAACCTGGAGTCCGTCTAAGTAAACATTTTGCACCACATTCACTTATTGATAATGCTTTTTGCTTATTGTTTGAAGTTAAACCTGAAATCTCTTTTATCTGTTTGTATCTGATACAAATTTGATTGCTGAACTTTTATATGCATAATGTATGCTTTCTTTTTTTACTTGCATCTTAGGCTACGATAGTACCACCTGTAATTTGTATCTTTTTGCCCGTGAAGTATGGCTGTGAGATAAGAACTCTAGCTTTCCATTTGATGTTTGTCAGTGATGTTACTGATCGGCTCTGTTTCCTTCTATGGTGTAGGTACAATTTTCATTTGTTCCCCAGAGATGAACTGAACATTGGGATGCCTTCTTACAGTTTTTCATGTCAAGTTTCACATCTAACATCCATGGCTCGTGAAGGTTTTGATTTTGATGCTTGCATATATGATGGTAAGCCTTATTATGGACTATTTACTTTGGTTTCACACTGATCGGTCACAAGGCTTGAGATTGTGAGAGACACCATAATTATTTATAGAGGAGGACAATAATTTTACAACCCAGATTTCCAATTCCTAAACCACCTTCGTTGCAAGATTTTGAGACATAAGACTTAAGTTACCCGAGACCCACTTCCTTCTCAACCCCTTTACACAAGAAGTTTCTCTAAGCTTATCCAACTTCTTCTTTAACCAACCCAGAATTTTGGAAGGAGATGGGAAATAGTGGGGAATTCTGCTAACCATAGACTGGAATTAGTGTTAGTTTATCCCTTTGCAGAGATGGTTTTCTTCCAAGATGAAAGCATTTTCTGAACTTTATCAATGCTCAGTTCCCAAATGGAAAAGGCTTTAGGATTATGACCCAAAGGCATGCCTAAATACACAAAAATAAAGACACAACCCCACGCCTAAATTGGTTAGCCTACCTCCTAATTTTATCCTTGCGACAACTGACAATTAATTCTCACTTAGGAATACTCATTCACTTTGAGCCCCCCACATCAACTAAAAAATATGTAAAGTACTAGTTAAGTTAATATAAGACTCATTTCTCGATAAAAGAAGACAAAGTTGTCGGCAAACTGCAAATGAGAGAGATGGATACCATCCCTTCTGATCTTGAATCCCTTGGTCAAACCCTCTCTGTTCCTCCCAGCAATAGTGGATTGAGGACATCCATTATAACAGGAGAAAGCAAGGTGTCCTATTTAATATCCCCCTGCTTACAAATATTTTCCCCTTTGATCTATTCTATTATTAGCCAAGATGGAGAAGTTGTCGAGCATAGACAGTTTCCTACCCAAGTTCTCCATTTGAAGCTTGTAGAGACTAAGGTTGGAGAGAATCCAATGTGATGTATTCTCATTATTAAAGTCTATATATATAGACAAATATACAAGGTTGACCTAATCCTATAAGGAGAAGGTAAATGACAAATTAATATTAATACAAGAATATAAAATATACTAATATCTATACTCTAACACTCCCCCTCAAGTTGGTGCATATATATTAATCATGCCCAACTTGTTAGACAAATAATCTATTCGTGCTCCATTCAACTTGTGTTCTGTGATTTTTGATATCATTGGGATCACCTCATAAGTTATGATTGATTTCTTCTCAGCCATAACAAACAAACGAACTTATTTGAACAAAATGACAGAACCAGACCAAACCACCCGAACCAAACAAAACAGATGAATCAAACTGCTGGAACCAAACCGGATTAGGTGTTTTTTGAAACCAGAAACCCTAAGTGCTACCCCACGACAACCAGAGGGGCGAAGGCGACGGGTGGCGACTGGGGGTGACAAAAGCACACGGTGACGGCGACGGCGATTGGCGGCGAGACGAAACCCACGAACAGCAATCGGAAAATAGCAGCGCTGGCGAATCAGCAAACGGCGGTGGTCGGTAGTGGTGGTGGTCGGCAGCGGCGGCGGGAGTAGTAGTGAGTTGAGTTGGATAGTAATGAACAAAACCCTAAGGGACAAAACCCTAATGGGCATCAAAACCCTAATGGGCACAAAATCCTAATGGGCAAGAAACCTAGAGTTCTGATACCATGTAGAGACTAAGGTTGGAGAGAATCCAATGTGATGTATTCTCATTATTAAAATCTATATATATAGACAAATATACAAGGTTGACCTAATCTTATAAAGAGAAGGTAAAGGACAAATTAATATTAATACAAGAATATAAAATATACTAATATCTATACTCTAACAAAGCTAAAACCTTTTCTTGCAAAGAACCATATCCATAATTCTTGATCCACATGATCATTGGCCTTTCCAAAATCTATCTAAAAGACAATACTTTGTTCTTTCTAATTTGACATTCTTCGAAGGTCTCGTTTGCAACCAAGACTTGGTCCAAAATGCGTTTGCTACAAATGCCCCTTGGCCAAGGAGAACTGGTACAAGAAAGGATGTTTCTCATTTCAACCCCATGTCTTGGAGATGATCTTGTTAAGGATTGTAAACAAACTGATAGGTTTGAAGTCCTTAATTTTGTGTGCCCTAGTCTAGTCATTTTAGGAAGTATACAAATGAAAGGTTCATTCATAGAAATGTCTACCAAACTTCTCTTATAAAATTCATTAAAACATCAGAGCGTGATTTCTGTTGGAAGATGCCCTAATTCTCCTAGAAGAACACCATAGAGAAGTTACCAACGCTCTCCTCCATCACAACTAAATACTTTCCTTATTCTTCTAAAGTGAAATGTTGTTCTAAAAACTTCCTATCTTCAACTCTTATTGGGTGCCTATCCAACTTGTCAACAAGGGCATAACAAGAATTTGAGGGGCATCAAAAGGAAAGAAAAAAAAATCCAAATTCATTATTGATCTCTCTATCCTTGAAATCATGTTCCTGTTCTCCAGATCAAGAGAAGAAATCAAGTTCCTTAGTCTCCTAGAATTAGCAACCCTATAAAAGTAAGATGTGTCGCAATTACCTTCAGTAACCCACTTCACTCTGGATATTTGTTTCTAGTCCATTGTTATGCAATGGAAACCGAAAGTCGAGGTACAGGTGAAGATCGGGAGGAAGCCACTAGGCCGCGATGGGCTCGGCCCCGACCCGGGGCTCGGCCCCGACCCGGGGCTCGGCCCCGACCCGGGGCTCGGCCCCGACCCGGGGCTCGGTCCCGACCCGAGGCTCGGCCCACGGCCCTCCAGCAGTCCTTCGTCTTCGATCCACGGTTTCGCCCAGGCCCGCCGACGAAATTAGGGTTAGCTACCTATGGAATGTTCTGGAACAACCTGACGACTATAAGTAGCGATCCAGCCGTAGAGGTAAGGGCATCTGAAATTAACTACTCTTCACATTATTCTCCTGCTAACTTAAGCATCGGAGCCCGTGTGACTAGAGTCACACCGGTTTAGCTCATCTGGTTTTGCAGGTACTAGTCCCGGATCAACAAGTTTGGTAGGTGCGAGGAGGTGAACCGGAGAACCGAAATCCACGCATCAACAATTGGCGCCGTCTGTGGGGACCGACTTAAAGCATCCAGTTGAGCAACATGACACCAGAAAGGAGTCCACGACGCTCTGATGATAACTGCTCTGCCAAGAGGAGGCTGAACTTGGGCGACCCCCAGGTTGGAGGACCCGAGGATGGGACCAACCAGCCAAACCAAGAGCGTCAGGAGGGGTTGCCCGAGGTGCAGGTATTAACGACCCCTGAGCCATTCCAGAAGCAGTTCGCGGTCTTGGAGGATAAGGTAGAGGGCATGCTTCAACGCATGACCCAAGTCCTTCGACAATTCGAGCGACAGGGGTCCGACGAAGTGCCCCTTGTCAGAGACCCGAAAAAGGGGAAGGGCCCAGCGGAAAGCGATACTGAGGAGTCAACGAACAGTGCAGGGAGCAAGTTGCGGATAGGTGGAAATACCAGGCGACGAACCCGAATTTTCGACCCTCCAAAGACGAAAAAGCAACACAAATCCCCGGCACCGAATGGGGGCAAGAGCGACCATGATGACAGAAACTCTGAACCGATAAGTCTCGACAAAGGCAAACCGACAGATCGGCCAGAGTCCTCGGAGAAGCGACATAGCCACAAGGAGAAGGGATTCGACCTCGAAGAACTACTGGATCAAGCCGACTCACCATTCACAGAGGAAATCATGAGAGAAAAGGTCCCTCCAAAATTCAAGCTACCCACGGTGAAGCAATTCGACGGGACAACCGACCCAGTAGACCATCTAGATGCTTATCGGGAATGGATGGATATCTACGGAGTGTCGGAAGCGGTCAGGTGCCGGGTATTCTCGACTACTCTCAACGGGTCGGCCAGAATATGGTTCCGACAATTAAAGCGAGGGTCGATCTCGAGTTTCAAAAGCTTGGCTAGAGCATTCGTGACCCAGTTTGTAGGGGGGCGGTGTCGGAGCCGACCCGTGGCTTATCTCTTAACCGTTAAGCAGAGGACGACAGAGAGTCTACGCGACTATGTAGCCCGGTTCAACGAGGAGAAGCTGCAGGTAGAAGGCCTTACAGACGCTGTGTCTCTGCTGGCCTTCATGTCCGGCGTCAGGGATGAACATTTGTCATTCTCGTTCGGAAAGAGAACACCGAACACCTTCTCGGAGGCGCTGAGCCGAGCTCAGAGGTACATGAGCGCTGGTGAGTTCTTTTACTCAAAAAGGGAACCTGACGGAAAGCGAACCGACCCAAAGAGGGAAAGGTCGGGAGATAAACTGCAGGGGTCGAGATGGGAGAAGAGGGATCGGAGTAGCCAGAAAGATCCACCCCGAAAATTTGAAAAGTATACCCCGACCACCGTTCCAATCGAGCAAGTGCTGATGGAGATCAAAGACCAAAGGTTGCTTAAATGGCCGGAGAGGATGAAGGCCCCGTCAGCTAAGCGCAGCAAAGGCAGGTATTGTCTCTTCCACAGGGATCACGGCCATGCAACTCAGGATTGTTTTGATCTCAAGGAAGAGGTGGAAGGACTAATCCGAAGGGGCTACCTCAAGGAGTATGTAGAGGAACCTAAAGCGACCCAGAACGACGAAAGCGACAAGTCTCCCGCAAGAGAGATTCGAACTATAATGGGGGGCCCCATAGAAAGAGAATCCGGGAGAAAAAGGAAAGCAGATGTGCGTGAAGCTAGGACGAGTCGCGAGCAAAATGAGGTCTACCACGCGTATACTACAAACCGGCCGGTGACAATTGAATTTTCGGAGGACGAAGCAACTCACCTCCTTCACCCTCATAACGATGCACTTGTTATCACGTTGAAGATAGCAAATGTTAAAGTACATCGAGTCTTGGTGGATGGGGGCAGCTCGGCGGATATCATCTCTTGGACAGCCTATAAAGCTATGGATCTAGGAGAAAAGGTGCTCAAGAGTAGTCCAGCACCACTGGTAGGATTTGGGGGAGAACGGGTCATCCCCGAAGGGAGGATAGAGTTGCCAGTAACATTCGGAAGTGGGCCGAAGAGTGTCACCAAGATGGTGGACTTTTTGGTCGTTAACTACACATCCTCCTACAACGCAATACTGGGAAGACCGACGATGCATATGCTCAGAGCGATACCATCCACATATCACCAATCCATGAAGTTCCCAACACCGGGTGGGGTAGGAGAAATTAAAGGAGAACAACGAGTGTCACGGGAATGCTACTATACCTCAATGAGGGACAACGACAGAACTTCTACTAAGGGGGGCTGTTGACCTTTTATTTCTTCCTTCAAATATGGTGGTTTTCTACTTTTAACAAGATTTTCAATTATAATTTCTTTTGTTCAATAAAGTGCCCATTATTTCTCTGTCAACTGTATTTCTTAAATCCAAAACGAGATACCAAGAGGCCTTTTTATAAAGTACTTTGCCTCGTCTACAAGCGTACTCTCAAAAGATATCAACAATACAATTGAGAGTAGGGGGCAACAGTACCGACTACGGCTACTCAACGACTTAAGCTTGGTAAATCCAATCCTACACGGTGACGGTAAAACCAGCTATACAGGGCAGGCCGAGCAGGGCTCGGGACCGACCACTGCTCGGGTCCGACCACTACAGGGCAGGTCGAGCAGGGCTCGGGACCGACCACTGCTCGGGTCCGACCACTGCTGGCGTCGACCAAGTGCGAACGAGCGCAGATCTACATTAGTCGGCAGTTCTACGAGATAGCCTATGCTTGTTAATAGGTCCTATTTTCGACTAAACACGACTCGTGGGCCGACCACTGCGCGGGTCCGACCATCACTCGACGCCGGTCATGTGCGACGAAGCATGAATCTACTTTAATCGACACGTTTGGAAAGAACAATTAAACAATCTCAACACGGCCAAACCAGAAGCGGGTCAATTGGCCTAGCACGGTTAAAACATGAGATGGAGTAAAAATACAAAAACAACAGTGGGTGTAAAACCATTGGCTATGACCAACGAGTTGAAAGCCTACGAAAAGAAAGCAACAAAACTCCATCAGGGTTAGAGCCGTAAGCCAGTTAGTGACTGGTAAGAGGGTTAATTGATGATTCCAAAGAAAATAATACAAGCAACATAGCGACAAAGCACATAAAAGTCAACCATAAGAACTACTCGCTCAAGCTACCCTATTACTCGTCGTCGTCGTCATCCATGTCGTCAGGAGCGTCACGCTCGGCCCTGAAACGCTCCGGGAGGAAGGAAAAGTCAATGTCAGGGTGTTGAGTAGAAACTTGACGGAGAGACCAGGAAACACCGCACTCCATGGCAGAGTTTTGCAAGTCAACATACTCCTGAGTTTTCTTGAATTCCCTGGCCAAGAACTCAGAGTTAGAAAGTCGAGCGTTGGCCTCGTCAAGTCTCCTCTGCAGGTTAGCTAGCTCGTCTCGAGATTTTCTCTTCTCTGTTTCCAATTCCCGTTGGGTACCCTCCAGAAGGCTGGTGGCCTGGTTGAAGGAGGAAATGGCCTGTTCCAGCTCCTCCCGAGGGGCATAGTGGCAGCGGAGGTGGTTAATTTCGTCAGCAACTCGACCCGAGAATACCACCAGACGGTTGAAAGTCTGCCAAGGTTAAGATTTGACGTTAGGGGAGAATGCTATGACAAATACTGGAGGTTACCAAGCACTCACCTGGTGGAGATCGCTAAGGCAGGTGCTGATGCTATGCTGAGGATTAGACAGACCAAAGTCTGACCCACTTGATGAGTCGCCGAGGCCTTGCCAGAGACTAAACGCTCTTTCCAGGTAAGCTGTCCCGTCAGCATCAGAATTATATGGGCCAGAGAAAGGGAAGATTGGGACTTGAGAGGAGCTTCCTGGGTGACCCCGAGGGGAGGACGGGGTAGCTGACCCATGAAGGCGGGCAGAGCGCCTCGGGGCTGTTGGAGGCACGGAAGATCGAGTGTGTTGTGAAGGGAGTCCCTCCTCGGTCAAATCAGTTACCTCGACATCCGAAGCCCGACTGGAACCGGCCCCCAAACCCCGGGTATTCCGGCGACGCTCTCTTTCATACAAGGAAGCACTCCGTCTCGACATGTCTACAAACAAAGATAAAGGTAAAAAGCGACGTTCATGCAAAGTGCAGAGAAGATTTCGATAAGGACCTGGAAGGTCGCGCGGAGGGGCCAAGCCAAAATCCACTAGGTTTTGCTCCGTAACCAAATCTGGGCCCCAACGCTCGATATCCGGTAGCTGGATAACGGTGTGATAGAAAGTGGTTGCCTCGGCGGTGAGCTCACAGCTGCGGGAAACTGCCAACAAAAAAGAATATCAGAGTTGACGTTTGCGAAAGTCCCGGCGGAGCTCGGAAGCTACTTACCCAACTCCCTACACTCGGTCGGGACAGGAAAATACAACCCTCTCTCATCACGGGCCAGCCAGTCACCGCCAACAAAGAACCATTCATTCTTCCAATGCTTCACTGAGGAGGGACCCATAACCAGAATTTGATTCCGAGAACTAACATAAAAATGAAAGTTATCCTCGGGGCTGTGTTTGAGATAATAAAGCGACATAAAATCCGCGGCGGTTAGTGGCTGCTCGCCCCCGAGGTGCGACCACAAAATAAAGCAGCTAATCAAAGTAGACCACCCGTTCGGAACGATTTGGGAAGGAGCTATTTGATTAAAAGCTAAAAAGTTTTGAAGGAAAAGAGGCAATGGTAGGCGAACTCCAAATTGGAACATCGCAGCATAAAATACTACTTCACCGGGATAAGAACCGTCAATACTCTCTCCCGGATTCGGAAGACGAAGGCTAACCGAATCCGGGATATGGTATTTCAAGCGCAAGCGGCGCAGGTCCTTCGCCGTAAGAGTGGAGTTATCCATCCAAAGTGGACGATAAGACTGGGACTCTGACGAAGGATGTGATGATGACCCATCATCCGAGGTAGACCACTCGAAATCAAGGCCGTCCATATAAAAAGAAAATACAAAGAACAGGGAAGAGAAATGAATACCTTGTTGGGAGGTTGGCAAGAATTGATAAGGATGGAGGGGTTTAAATAGCCCTCAACTCATAGCACAGTTCTCGGTCCAGAGGACTTTACCCAGCAGGCCAAAGGGTGCTCGGCTCGGAACCCAACACCCTTGTGACTACTTGGCACGGTACCCAACACACTTGTGACTACTCGGCTCGGTACCCAACACTCTTGTGACTACTCGGCTCGGTACCCAACACTCTTGTGACATCTCGGCTCGGCACCCAACACCTTGAGATCTCAAAGCATGGGTCTACTGTAGATGTGACAGTTGCATGACAGGCTACATCGGGTCTAGCAAGGAAAATGAAAATTGACATACACTTTCACTTTCTTGTGTCCCGTGAAGATAAGACCACTCACTGCGACAAGGGTGCCATGAGCCCCGCAATGATTCGACAATTCATTCGACTCGGGCCCATATGACAAGATAGATCACTGCCAAACTATACTCCCAATGAGATCGAAAGCATCACATTGAGAGTAGGGGGCAATTGTTATGCAATGGAAACCGAAAGTCGAGGTACAGGTGAAGATCGGGAGGAAGCCACTGGGCCGCGATGGGCTCGGTCCCGACGCAGGGCTCGGCCCCGACCCGGGGCTCGGCCCCGACCCGGGGCTCGGTCCCGACCCGGGGCTCGGCCCACGGCCCTCCAGCGGTCCTTCGTCTTCGATCCACGGTTTCGCCCAGGCCCGCCGACGAAATTAGGGTTAGCTACCTATGGAATGTTCTGGAACAACCTGACGACTATAAGTAGCGATCCAGCCGTAGAGGTAAGGGCATCTAAAATTAGCTACATTTCGCATTATTCTCCTGCTAACTTAAGCATCGGAGCCCGTGTGACTAGAGTCGCACCGGTTTAGCTCATCTGGTTTTGCAGGTATTAGTCTCGGATCAAGAAGTTTGGTAAGTGCGAGGAGGTGAACCGGAGGACCGAAATCCACGCATCAACATCCATCATTTCTGTTTGAATAAGTCTCAAAGTCCCATAGAATTCAAGTCATATAAAGTGTTTTATCTTATTAATAATATCGTCTTTTAATTTAGAAAAAAAAAGAACCCTTGAAGACCCTCAGGTTCCGGCTTTTAGGTGTGAATTTGAAGGACTTCAATCTTTTCGTAAGTGTAAATGCCTCCAACCTCCCAACTACATCATCTGACCATTAGTTGAGCAAGGAAAACTTAAAATAAGGATGTGCCACATGTTTTCAAACTTGGACAAGGACCCCATTTAATATCCCTGACTTAGAAGCTGACTTGTTGATGGTTAGAACCGACTCTGGGACTGTCGAACTTCTTGATACCCCCAAAAATATTTTGTCCACCCTTTAAAGGACAAAATCAAGATTTGATAAAGTAAATCTGACATTCACGAGGGGAGGATAAAAAAGTATACACTCTTCAGTAAACTTGACTCCTCGAAGATTTCTCCAGAGTAAAACTCACCAGCTAAAGACCAGCTAAGTTCACAAATACTGAAAAGGCCACCCGACTCTTCCCAAAAATCACCTCTCCTTATATCTATAAGGGACATACGCCTCATTGTTTTGAGATTCATATGGCTCATATAGTAATTATACAATAGAACTCCAACCACCTCCCAATTTTTGTTGGTGGATTGCTGAAGATATGTTTATTTCTGTTAATTTTCTATCAGCATGAATTTTGTATATGCTAAATCTATCATCTGATACTGTAGTTTCACTTGTAATTATCTTTGTCCTCCTGTTGTTTCAGGCATTTCTTATTTATCTAGAGCTCAAGAGTCTATAGCAAAAGTTCGAATGGGCTGTCCAACTCCGACACCTAGTACTTACGTTTTGAAATCTTCTTCTAGACAGTCAATTGCTGATTCAGTTTTCATTCAACGGGTTAAATCACGGGTTAAGAACTGGAAAGATGCATGTAATTCAAGCACAAAAACAAATGGTAAGTTACTGATTTATTTTGCTTGCTAACACAATTTCTTCATGGTTTTTTCTTTCCTTTTTCCTCTCTTCTTTTTTAAGTATATATATATATATTTATGTTTTATTTCATTGTCTCCTGAAATAGTAAAGGTAGTGTTTCCATTATATAGACGCTCTGCTAAGTTCTTTGAAAAAGCTCATCATTGGTAGTGAGCAGTATGGATCAAGACCATCCATGACTATAGATGTTTGTAGTGAACGTCAAGTTCTACTTGTATTAGAGGTACCTTTCTTTTCTCAACTTATTGAGTACTTTAACGTGTATTGCATGTTTTTAAACTATAGTAAATTATCATGTGCGTAATATGGAAATGTACCCTCCCAGAAATGTCTCCTTTTAGAGCAAAACTATAATCATCGTACATACAAAAGTGCATTTTTGCTGAGCAGTTGCTAAAAGATTATAAATAATGGATCCCAAGTATTTTTCTTGCATCAAGATAAAATTATAGATCATTAATCTTTTTTATTTGCATTATTATTATTTGTAACTTAACATGTGTATTGCACATTTACATTTCCATATCATATGTGTTATTATATTTGATTTATAGTAAAATTACAAATTTAGTACCTGAACTTTTATGATTGTATATTTAATTTTTTAACTTTAAAAAGTTTCCATTACATCCTTGAACTTTTATGATTGTCTATATAATTTTTAACTTTAAAAAGTTTCCATTACATCCGTGAACTTTGTGATTCCATTTCTTTTTTGTTGTTAAAACTGTTAATGAAGTGGTAATGTAACATGCTTATTGATTAAACTTTGGCTAATTTGACATGATGTGGTGGAAAAATGCAAATGAACTGGATAGTCGGACAAATAATGTGACACGTGCAACATAACCTTTTCGAAGCAACATATCAAATCTTTTTTGGCCATGTCCCTTTATTTTGTCAAGCAATCATTTATTGTGACTTGTTTGCCATGTTATGCCAAATTAGCTAATGTTTATCCAATAACCCTGCCACACCATCATTTAGTTAATGGTGCTAATGATTGAGACTACAATCTACATAGAATCACAATTTAAAGTTCAATGATGGAATTGAAACTTTTTTTATAGTTCTGTGACTAGTAATATGTGCTATAACTAGTTTTAGTTGGTTAATTTGTTATTTTACGTGGCTGGTTTAAATTCTTTGGAGGATCAAGTCTCATGTATTTGGGATTTTTTTTCCCTTTTTGTGAATAATGATAAAACACCCTAGGTTAAGAATTCTTGGTTTTAGGTTGCACCATATAATACACATGATAAGCTAGTCTAATTAAACAATTTGTTATTAAAACAGATATGAGAAGACTGAGAGGAACCAGAAAATGATAAAATATATATGTGTGTGTTAAAGACAAATTACATAACTCAAGCACTTCGAAAGGGCCAAGGTCTTCCAAAATTAACCTCCAAAATTCTACCTGTCTTCAACTCCTTTCACCCACTCTATTTATAACCACTCTTTATTAACCAACTCCCTTAACTAATGTCTAATAAAAATCATGCCATCTTAATATCCTAATAGTACCCTTGACATTTCCTTACTNAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTTGAGAGAGAAGGGGAAATGATGGGAAGCAAACAGGAAGGGCGTGGGAGAGAGAACCATGAACTTGCCTCTGAACTTATAAAGTATGACAGTAATTAAATAACAGTGAACTAAGCAAAAAATATGATGCGAAATGATTTATTTAAGAGTGAAAAAAGGTATTCAAATTTATTCTTAGTACTATCCTTTTTAATGTGGTAATGATTTAGCCTATTGCTTCGTACAATACAATGCATTTCTCTATGATATTGCTTTTTCTGCAGAGGGAGTTCAAATTTAGACTAATATTCTTTTCTGCATTTTCTGTAGCTGTTGAGTGACTTTTCTGATGACTTAGTTCCTGTCGTAATTCCAGCAAAGGGTGGAGGAACTCAAGCAGTTCGTGCCATTTTGACAAGCTCAAAAGAAGACAAGATTCTGCTTGAGGTACTAGTAAATATTTCGCTAGATTTTCATATTAGGAAATGGGGTTTATAGAGAATACATTTTATTGATCCAAATGCACCATTCAAAGTTTCTAAAATTATTGATTCTTTAGCTCTTTGTAAAAATTTACATACTTCAGTTGGTTCTTTCGTTATTTTCACCTGACCTTCGCATGGGCATAATTAAAAAAATACTTATGTCTTGAACAAATTATTATTATTTTTTTTTTGAAAAGAAACTATTTCATTGATAATATGAAATATGAGTACAGAAAAGGGGAGAGATCCATAGGATGGCTACAAAAAGCCTCTCCAATTAGATAAGAGAGGGACAAAACTATAGTGTTTAAAGAGAGGAGAGCATTTACACCAAGATACAACCAAACCAACTATAGAATCAAAAAGAAGTTTCGTTGTGAGCTCTCTTCCTTGGAAAATGCGACGATTCCGTTCAAGCCAAACCGTCCATAATAAAGCCCAGACAAAATGGAGCCAAAGACAAAGCTTTTCCTTTTTGAAAGGATGACCAGTGAGTGTATAAGCTAATAATTGGGTGATATCCTTTGGAAGAGCTACCGACCATCCAAAATTGATGAGGAGTTTGTTCCATAACTCGGTGGCCAGTTTACAAGAGACAAAGATGTGTCCAATGGATTCTCCATGTTGCTTGCATTTTTTTTGAACAAAAATGAAGCAACGGTGGAATCAGAAAATTTATAAGGGAGGACTTAATTTTCAAAATTGAGAATTAGTGGTTCGATGTATTAGTCCGAGGGGCGAGGGATTAGGGAGTATTGCCAAACTTCGAATGGATTTGCTAGAATGTGTCGTTCAGCTCTGTATATCTTGTGAACTATTTTGTATGCAGAAGGAGCTTCAAAATCTTGAAGAGGAGGAAAACAAGAGATTTCGTGGTTTTCGAGAGGTGATAGATATGATTTCTGCTTCACAGAAACCTATTGTCTCCTACGGTTCTCTTAATGGTCTTTATCTGATATATTCTTTATTATTGGTTGGTCTCTTCGTTTTTTTTCTTTCTTTTGCTCTCTAGTTTTTCTTCTAATGCTTTTCTTTTGCATGCAGATTTTACATTTATTCACTCAAAATTCCTTGCCCCCCTACCTAGTAGGATAGATGAGTTTTCTGATTCATTGCATTCAGTTTTCCCACAAGTGCTTGATGTCCAGCATCTGATGAGAAATATTAGTGGCCTCAATAAACCGACCAGTATATCTTCAGCTCTTTCCTACTTGAAGAATCACTATTTTGCACCTGTTGACTTGGATATTCCTGTTGAAGGTCTGTCACCTTGTTCATCTACCTGATTCAGTACAAACCACACTTTTCCTGTGTGTGTGTGAGAGAGAGATAACAGGGACTTGTTACCATATTTCCATAACATCGTATCTATAAGCCTTAAGTTTGCATCACCATTTACTTACATTGTTTTAATAAATGCATGCCGACGAGGACACAGGCACCACACCAGTCCAGTCGCTTGCCTGGTGCTAAGTTAAGTGCTCTCACTCAAACAAGCACCTAATACTTTTTCTATGTTTTCATTCATTTCTTAACTGCCGCCCTTTACTTGGCCTTTTGGTTTGCTTTAGCTGTTTTTAGAATCGTATTTTGTCTTACCAACGAGTGCAAAGAAATTTATCATTTGCTTTACAGTTATTTAATATATAAAAAAAAAAAAAAAAAAAAAAAAAAAATCCTATTTCATTACATCTGTACTCTTTTTTCAAGTGAATTACTTGTGTTTTTCATGTATCGGGTTCCCGCCTAAGGCTTGCTATTTTGCTTTACGTCAAGGTTCCATTGAACTTTTGCACCATAGTGAACCCTGCATCTCTAAGAGCTCTGATCATCATTGTGATCTCTTATTAAGTATTACTGCTTAACCATATTGCATCATGTTGCAGGTACAGGAAATGAGCGCAAGTTTCATGGGCATAATGCTATAAAGTTATGCCATTTGTTTACAAAAGTCTGCTCTGTACTTAAAATTGATCTCAGTAGTGTCCAATTCAACGAGAAGCGCTTGGCCTCAAATCTTGAAGGGTGTGCAAATGTTTTTGCTTCATTCCCTCCCTGCCACCAAGAGCCTGAGGACGAGGGTGAGGACGTAAAGATCTCGACAAGGAACGTTAGAAAAGTGAGCTGTGGGCAGTTGGTTTTCTTGTGGGGATTTAGAGACGGGATGACCGCCGGGTTGCTGAAAGCTGCACTCCAAGGATCCCACGAAGTTTTATGTGAAGAGTTCGATGTACGGTTCGTGGGCAAGAAGTGCGCCATTCTTGTTTTCTGGCAACCTGGCTTATCTGAAACTTTCCTTGATGCGATACACAGCGATGACATTCTGGGATCTCTAAAAGATATGGTATCAGAAGGCCTAAGAGCAGCAAGTTATGAAACTTACAAGAGAGTCTGTAGGTTGGGTCATTGGGAAGCAGATTTAGCTGAGTCCCTGGAGAGAGCCACTTCGGAAGCTGATTGCGAAACCGCTCAGTTCGACATCTATTACTCTAATAATTCTTTGATTAATTTGAATGATCTT

mRNA sequence

ATGGCTTCTCGTTCCTCATCTCTCCACTTCCACAGACGCCTCTACAGTACCTCCAATCAATGGAGCGTTCGTCAAGTTCGCAAATCCGATTTCCATGGCTGCTTGGGGGACCTGGACAGCCACATCTCCGCCTCCGACTTCATCGCTCTCTCTCTCCAGAAGACGGGTTCTTCTTCATTCCCTTGGCACCGCCTTCAGCCCTTTGACACCTCTCACACCGCCTATTGCAAGGCCAAGTACGCCGCCGAGAAGTTTCAGATCCTCCAATTCGCTCTCTGCCCCTTTTCTGTCCGGGAATCCAAGCTTATCGCTCATCCGTACAATTTTCATTTGTTCCCCAGAGATGAACTGAACATTGGGATGCCTTCTTACAGTTTTTCATGTCAAGTTTCACATCTAACATCCATGGCTCGTGAAGGTTTTGATTTTGATGCTTGCATATATGATGGCATTTCTTATTTATCTAGAGCTCAAGAGTCTATAGCAAAAGTTCGAATGGGCTGTCCAACTCCGACACCTAGTACTTACGTTTTGAAATCTTCTTCTAGACAGTCAATTGCTGATTCAGTTTTCATTCAACGGGTTAAATCACGGGTTAAGAACTGGAAAGATGCATGTAATTCAAGCACAAAAACAAATGACGCTCTGCTAAGTTCTTTGAAAAAGCTCATCATTGGTAGTGAGCAGTATGGATCAAGACCATCCATGACTATAGATGTTTGTAGTGAACGTCAAGTTCTACTTGTATTAGAGCTGTTGAGTGACTTTTCTGATGACTTAGTTCCTGTCGTAATTCCAGCAAAGGGTGGAGGAACTCAAGCAGTTCGTGCCATTTTGACAAGCTCAAAAGAAGACAAGATTCTGCTTGAGAAGGAGCTTCAAAATCTTGAAGAGGAGGAAAACAAGAGATTTCGTGGTTTTCGAGAGGTGATAGATATGATTTCTGCTTCACAGAAACCTATTGTCTCCTACGGTTCTCTTAATGATTTTACATTTATTCACTCAAAATTCCTTGCCCCCCTACCTAGTAGGATAGATGAGTTTTCTGATTCATTGCATTCAGTTTTCCCACAAGTGCTTGATGTCCAGCATCTGATGAGAAATATTAGTGGCCTCAATAAACCGACCAGTATATCTTCAGCTCTTTCCTACTTGAAGAATCACTATTTTGCACCTGTTGACTTGGATATTCCTGTTGAAGGTACAGGAAATGAGCGCAAGTTTCATGGGCATAATGCTATAAAGTTATGCCATTTGTTTACAAAAGTCTGCTCTGTACTTAAAATTGATCTCAGTAGTGTCCAATTCAACGAGAAGCGCTTGGCCTCAAATCTTGAAGGGTGTGCAAATGTTTTTGCTTCATTCCCTCCCTGCCACCAAGAGCCTGAGGACGAGGGTGAGGACGTAAAGATCTCGACAAGGAACGTTAGAAAAGTGAGCTGTGGGCAGTTGGTTTTCTTGTGGGGATTTAGAGACGGGATGACCGCCGGGTTGCTGAAAGCTGCACTCCAAGGATCCCACGAAGTTTTATGTGAAGAGTTCGATGTACGGTTCGTGGGCAAGAAGTGCGCCATTCTTGTTTTCTGGCAACCTGGCTTATCTGAAACTTTCCTTGATGCGATACACAGCGATGACATTCTGGGATCTCTAAAAGATATGGTATCAGAAGGCCTAAGAGCAGCAAGTTATGAAACTTACAAGAGAGTCTGTAGGTTGGGTCATTGGGAAGCAGATTTAGCTGAGTCCCTGGAGAGAGCCACTTCGGAAGCTGATTGCGAAACCGCTCAGTTCGACATCTATTACTCTAATAATTCTTTGATTAATTTGAATGATCTT

Coding sequence (CDS)

ATGGCTTCTCGTTCCTCATCTCTCCACTTCCACAGACGCCTCTACAGTACCTCCAATCAATGGAGCGTTCGTCAAGTTCGCAAATCCGATTTCCATGGCTGCTTGGGGGACCTGGACAGCCACATCTCCGCCTCCGACTTCATCGCTCTCTCTCTCCAGAAGACGGGTTCTTCTTCATTCCCTTGGCACCGCCTTCAGCCCTTTGACACCTCTCACACCGCCTATTGCAAGGCCAAGTACGCCGCCGAGAAGTTTCAGATCCTCCAATTCGCTCTCTGCCCCTTTTCTGTCCGGGAATCCAAGCTTATCGCTCATCCGTACAATTTTCATTTGTTCCCCAGAGATGAACTGAACATTGGGATGCCTTCTTACAGTTTTTCATGTCAAGTTTCACATCTAACATCCATGGCTCGTGAAGGTTTTGATTTTGATGCTTGCATATATGATGGCATTTCTTATTTATCTAGAGCTCAAGAGTCTATAGCAAAAGTTCGAATGGGCTGTCCAACTCCGACACCTAGTACTTACGTTTTGAAATCTTCTTCTAGACAGTCAATTGCTGATTCAGTTTTCATTCAACGGGTTAAATCACGGGTTAAGAACTGGAAAGATGCATGTAATTCAAGCACAAAAACAAATGACGCTCTGCTAAGTTCTTTGAAAAAGCTCATCATTGGTAGTGAGCAGTATGGATCAAGACCATCCATGACTATAGATGTTTGTAGTGAACGTCAAGTTCTACTTGTATTAGAGCTGTTGAGTGACTTTTCTGATGACTTAGTTCCTGTCGTAATTCCAGCAAAGGGTGGAGGAACTCAAGCAGTTCGTGCCATTTTGACAAGCTCAAAAGAAGACAAGATTCTGCTTGAGAAGGAGCTTCAAAATCTTGAAGAGGAGGAAAACAAGAGATTTCGTGGTTTTCGAGAGGTGATAGATATGATTTCTGCTTCACAGAAACCTATTGTCTCCTACGGTTCTCTTAATGATTTTACATTTATTCACTCAAAATTCCTTGCCCCCCTACCTAGTAGGATAGATGAGTTTTCTGATTCATTGCATTCAGTTTTCCCACAAGTGCTTGATGTCCAGCATCTGATGAGAAATATTAGTGGCCTCAATAAACCGACCAGTATATCTTCAGCTCTTTCCTACTTGAAGAATCACTATTTTGCACCTGTTGACTTGGATATTCCTGTTGAAGGTACAGGAAATGAGCGCAAGTTTCATGGGCATAATGCTATAAAGTTATGCCATTTGTTTACAAAAGTCTGCTCTGTACTTAAAATTGATCTCAGTAGTGTCCAATTCAACGAGAAGCGCTTGGCCTCAAATCTTGAAGGGTGTGCAAATGTTTTTGCTTCATTCCCTCCCTGCCACCAAGAGCCTGAGGACGAGGGTGAGGACGTAAAGATCTCGACAAGGAACGTTAGAAAAGTGAGCTGTGGGCAGTTGGTTTTCTTGTGGGGATTTAGAGACGGGATGACCGCCGGGTTGCTGAAAGCTGCACTCCAAGGATCCCACGAAGTTTTATGTGAAGAGTTCGATGTACGGTTCGTGGGCAAGAAGTGCGCCATTCTTGTTTTCTGGCAACCTGGCTTATCTGAAACTTTCCTTGATGCGATACACAGCGATGACATTCTGGGATCTCTAAAAGATATGGTATCAGAAGGCCTAAGAGCAGCAAGTTATGAAACTTACAAGAGAGTCTGTAGGTTGGGTCATTGGGAAGCAGATTTAGCTGAGTCCCTGGAGAGAGCCACTTCGGAAGCTGATTGCGAAACCGCTCAGTTCGACATCTATTACTCTAATAATTCTTTGATTAATTTGAATGATCTT

Protein sequence

MASRSSSLHFHRRLYSTSNQWSVRQVRKSDFHGCLGDLDSHISASDFIALSLQKTGSSSFPWHRLQPFDTSHTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDELNIGMPSYSFSCQVSHLTSMAREGFDFDACIYDGISYLSRAQESIAKVRMGCPTPTPSTYVLKSSSRQSIADSVFIQRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSEQYGSRPSMTIDVCSERQVLLVLELLSDFSDDLVPVVIPAKGGGTQAVRAILTSSKEDKILLEKELQNLEEEENKRFRGFREVIDMISASQKPIVSYGSLNDFTFIHSKFLAPLPSRIDEFSDSLHSVFPQVLDVQHLMRNISGLNKPTSISSALSYLKNHYFAPVDLDIPVEGTGNERKFHGHNAIKLCHLFTKVCSVLKIDLSSVQFNEKRLASNLEGCANVFASFPPCHQEPEDEGEDVKISTRNVRKVSCGQLVFLWGFRDGMTAGLLKAALQGSHEVLCEEFDVRFVGKKCAILVFWQPGLSETFLDAIHSDDILGSLKDMVSEGLRAASYETYKRVCRLGHWEADLAESLERATSEADCETAQFDIYYSNNSLINLNDL

Homology

[Close]

BLAST of MS020722 vs. NCBI nr
Match: XP_022143589.1 (poly(A)-specific ribonuclease PARN-like isoform X2 [Momordica charantia])

HSP 1 Score: 1210.3 bits (3130), Expect = 0.0e+00
Identity = 600/612 (98.04%), Postives = 604/612 (98.69%), Query Frame = 0


Query: 1   MASRSSSLHFHRRLYSTSNQWSVRQVRKSDFHGCLGDLDSHISASDFIALSLQKTGSSSF 60
           MASRSSSLHFHRRLYST NQWSVRQVRKSDFHGCLGDLD HISASDFIALSLQKTGSSSF
Sbjct: 1   MASRSSSLHFHRRLYSTFNQWSVRQVRKSDFHGCLGDLDGHISASDFIALSLQKTGSSSF 60

Query: 61  PWHRLQPFDTSHTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDELNIG 120
           PWHRLQPFDTSHTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDELNIG
Sbjct: 61  PWHRLQPFDTSHTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDELNIG 120

Query: 121 MPSYSFSCQVSHLTSMAREGFDFDACIYDGISYLSRAQESIAKVRMGCPTPTPSTYVLKS 180
           MPSYSFSCQVSHLTSMAREGFDFDACIYDGISYLSRAQESIAKVRMGCPTPT STYVLKS
Sbjct: 121 MPSYSFSCQVSHLTSMAREGFDFDACIYDGISYLSRAQESIAKVRMGCPTPTTSTYVLKS 180

Query: 181 SSRQSIADSVFIQRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSEQYGSRPSMTIDV 240
           SSRQSIADSVFIQRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSEQYGSRPSMTIDV
Sbjct: 181 SSRQSIADSVFIQRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSEQYGSRPSMTIDV 240

Query: 241 CSERQVLLVLELLSDFSDDLVPVVIPAKGGGTQAVRAILTSSKEDKILLEKELQNLEEEE 300
           CSERQVLLVLELLSDFSDDLVPVVIPAKGGGTQA+RAILTSSK+DKILLEKELQNLEEEE
Sbjct: 241 CSERQVLLVLELLSDFSDDLVPVVIPAKGGGTQAIRAILTSSKDDKILLEKELQNLEEEE 300

Query: 301 NKRFRGFREVIDMISASQKPIVSYGSLNDFTFIHSKFLAPLPSRIDEFSDSLHSVFPQVL 360
           NKRFRGFREVIDMISASQKPIVSYGSLNDFTFIHSKFLAPLP RIDEFSDSLHSVFPQVL
Sbjct: 301 NKRFRGFREVIDMISASQKPIVSYGSLNDFTFIHSKFLAPLPPRIDEFSDSLHSVFPQVL 360

Query: 361 DVQHLMRNISGLNKPTSISSALSYLKNHYFAPVDLDIPVEGTGNERKFHGHNAIKLCHLF 420
           DVQHLMRNISGLNKPTSISSALSYLKNHYFAPVDLDIPVEGTGNERKFHGHNAIKLCHLF
Sbjct: 361 DVQHLMRNISGLNKPTSISSALSYLKNHYFAPVDLDIPVEGTGNERKFHGHNAIKLCHLF 420

Query: 421 TKVCSVLKIDLSSVQFNEKRLASNLEGCANVFASFPPCHQEPEDEGEDVKISTRNVRKVS 480
           TKVCSVLKIDLS VQFNEK LASNLEGCANVFASFPPC+QEPEDEGEDVKISTRNVRKVS
Sbjct: 421 TKVCSVLKIDLSGVQFNEKPLASNLEGCANVFASFPPCNQEPEDEGEDVKISTRNVRKVS 480

Query: 481 CGQLVFLWGFRDGMTAGLLKAALQGSHEVLCEEFDVRFVGKKCAILVFWQPGLSETFLDA 540
           CGQLVFLWGFRDGMTAGLLKAALQGSHEVLCEEFDVRFVGKKCAILVFWQPGLSETFLDA
Sbjct: 481 CGQLVFLWGFRDGMTAGLLKAALQGSHEVLCEEFDVRFVGKKCAILVFWQPGLSETFLDA 540

Query: 541 IHSDDILGSLKDMVSEGLRAASYETYKRVCRLGHWEADLAESLERATSEADCETAQFDIY 600
           IHSD ILGSLKDMVSEGLRAASYETYKRVCRLGHWEADLAESLERATSEADCETA+ DIY
Sbjct: 541 IHSDGILGSLKDMVSEGLRAASYETYKRVCRLGHWEADLAESLERATSEADCETARLDIY 600

Query: 601 YSNNSLINLNDL 613
           YSNNSLINLNDL
Sbjct: 601 YSNNSLINLNDL 612

[Close]

BLAST of MS020722 vs. NCBI nr
Match: XP_022143588.1 (poly(A)-specific ribonuclease PARN-like isoform X1 [Momordica charantia])

HSP 1 Score: 1192.9 bits (3085), Expect = 0.0e+00
Identity = 600/646 (92.88%), Postives = 604/646 (93.50%), Query Frame = 0


Query: 1   MASRSSSLHFHRRLYSTSNQWSVRQVRKSDFHGCLGDLDSHISASDFIALSLQKTGSSSF 60
           MASRSSSLHFHRRLYST NQWSVRQVRKSDFHGCLGDLD HISASDFIALSLQKTGSSSF
Sbjct: 1   MASRSSSLHFHRRLYSTFNQWSVRQVRKSDFHGCLGDLDGHISASDFIALSLQKTGSSSF 60

Query: 61  PWHRLQPFDTSHTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDELNIG 120
           PWHRLQPFDTSHTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDELNIG
Sbjct: 61  PWHRLQPFDTSHTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDELNIG 120

Query: 121 MPSYSFSCQVSHLTSMAREGFDFDACIYDGISYLSRAQESIAKVRMGCPTPTPSTYVLKS 180
           MPSYSFSCQVSHLTSMAREGFDFDACIYDGISYLSRAQESIAKVRMGCPTPT STYVLKS
Sbjct: 121 MPSYSFSCQVSHLTSMAREGFDFDACIYDGISYLSRAQESIAKVRMGCPTPTTSTYVLKS 180

Query: 181 SSRQSIADSVFIQRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSEQYGSRPSMTIDV 240
           SSRQSIADSVFIQRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSEQYGSRPSMTIDV
Sbjct: 181 SSRQSIADSVFIQRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSEQYGSRPSMTIDV 240

Query: 241 CSERQVLLVLELLSDFSDDLVPVVIPAKGGGTQAVRAILTSSKEDKILLEKELQNLEEEE 300
           CSERQVLLVLELLSDFSDDLVPVVIPAKGGGTQA+RAILTSSK+DKILLEKELQNLEEEE
Sbjct: 241 CSERQVLLVLELLSDFSDDLVPVVIPAKGGGTQAIRAILTSSKDDKILLEKELQNLEEEE 300

Query: 301 NKRFRGFREVIDMISASQKPIVSYGSLN-------------------------------- 360
           NKRFRGFREVIDMISASQKPIVSYGSLN                                
Sbjct: 301 NKRFRGFREVIDMISASQKPIVSYGSLNGVYLIYSLLLVGLLVFFLFLLLSSFSSNAFLL 360

Query: 361 --DFTFIHSKFLAPLPSRIDEFSDSLHSVFPQVLDVQHLMRNISGLNKPTSISSALSYLK 420
             DFTFIHSKFLAPLP RIDEFSDSLHSVFPQVLDVQHLMRNISGLNKPTSISSALSYLK
Sbjct: 361 HADFTFIHSKFLAPLPPRIDEFSDSLHSVFPQVLDVQHLMRNISGLNKPTSISSALSYLK 420

Query: 421 NHYFAPVDLDIPVEGTGNERKFHGHNAIKLCHLFTKVCSVLKIDLSSVQFNEKRLASNLE 480
           NHYFAPVDLDIPVEGTGNERKFHGHNAIKLCHLFTKVCSVLKIDLS VQFNEK LASNLE
Sbjct: 421 NHYFAPVDLDIPVEGTGNERKFHGHNAIKLCHLFTKVCSVLKIDLSGVQFNEKPLASNLE 480

Query: 481 GCANVFASFPPCHQEPEDEGEDVKISTRNVRKVSCGQLVFLWGFRDGMTAGLLKAALQGS 540
           GCANVFASFPPC+QEPEDEGEDVKISTRNVRKVSCGQLVFLWGFRDGMTAGLLKAALQGS
Sbjct: 481 GCANVFASFPPCNQEPEDEGEDVKISTRNVRKVSCGQLVFLWGFRDGMTAGLLKAALQGS 540

Query: 541 HEVLCEEFDVRFVGKKCAILVFWQPGLSETFLDAIHSDDILGSLKDMVSEGLRAASYETY 600
           HEVLCEEFDVRFVGKKCAILVFWQPGLSETFLDAIHSD ILGSLKDMVSEGLRAASYETY
Sbjct: 541 HEVLCEEFDVRFVGKKCAILVFWQPGLSETFLDAIHSDGILGSLKDMVSEGLRAASYETY 600

Query: 601 KRVCRLGHWEADLAESLERATSEADCETAQFDIYYSNNSLINLNDL 613
           KRVCRLGHWEADLAESLERATSEADCETA+ DIYYSNNSLINLNDL
Sbjct: 601 KRVCRLGHWEADLAESLERATSEADCETARLDIYYSNNSLINLNDL 646

[Close]

BLAST of MS020722 vs. NCBI nr
Match: XP_022143590.1 (poly(A)-specific ribonuclease PARN-like isoform X3 [Momordica charantia])

HSP 1 Score: 1069.7 bits (2765), Expect = 9.4e-309
Identity = 547/646 (84.67%), Postives = 551/646 (85.29%), Query Frame = 0


Query: 1   MASRSSSLHFHRRLYSTSNQWSVRQVRKSDFHGCLGDLDSHISASDFIALSLQKTGSSSF 60
           MASRSSSLHFHRRLYST NQWSVRQVRKSDFHGCLGDLD HISASDFIALSLQKTGSSSF
Sbjct: 1   MASRSSSLHFHRRLYSTFNQWSVRQVRKSDFHGCLGDLDGHISASDFIALSLQKTGSSSF 60

Query: 61  PWHRLQPFDTSHTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDELNIG 120
           PWHRLQPFDTSHTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDELNIG
Sbjct: 61  PWHRLQPFDTSHTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDELNIG 120

Query: 121 MPSYSFSCQVSHLTSMAREGFDFDACIYDGISYLSRAQESIAKVRMGCPTPTPSTYVLKS 180
           MPSYSFSCQVSHLTSMAREGFDFDACIYDGISYLSRAQESIAKVRMGCPTPT STYVLKS
Sbjct: 121 MPSYSFSCQVSHLTSMAREGFDFDACIYDGISYLSRAQESIAKVRMGCPTPTTSTYVLKS 180

Query: 181 SSRQSIADSVFIQRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSEQYGSRPSMTIDV 240
           SSRQSIADSVFIQRVKSRVKNWKDACNSSTKTN                           
Sbjct: 181 SSRQSIADSVFIQRVKSRVKNWKDACNSSTKTN--------------------------- 240

Query: 241 CSERQVLLVLELLSDFSDDLVPVVIPAKGGGTQAVRAILTSSKEDKILLEKELQNLEEEE 300
                                     AKGGGTQA+RAILTSSK+DKILLEKELQNLEEEE
Sbjct: 241 --------------------------AKGGGTQAIRAILTSSKDDKILLEKELQNLEEEE 300

Query: 301 NKRFRGFREVIDMISASQKPIVSYGSLN-------------------------------- 360
           NKRFRGFREVIDMISASQKPIVSYGSLN                                
Sbjct: 301 NKRFRGFREVIDMISASQKPIVSYGSLNGVYLIYSLLLVGLLVFFLFLLLSSFSSNAFLL 360

Query: 361 --DFTFIHSKFLAPLPSRIDEFSDSLHSVFPQVLDVQHLMRNISGLNKPTSISSALSYLK 420
             DFTFIHSKFLAPLP RIDEFSDSLHSVFPQVLDVQHLMRNISGLNKPTSISSALSYLK
Sbjct: 361 HADFTFIHSKFLAPLPPRIDEFSDSLHSVFPQVLDVQHLMRNISGLNKPTSISSALSYLK 420

Query: 421 NHYFAPVDLDIPVEGTGNERKFHGHNAIKLCHLFTKVCSVLKIDLSSVQFNEKRLASNLE 480
           NHYFAPVDLDIPVEGTGNERKFHGHNAIKLCHLFTKVCSVLKIDLS VQFNEK LASNLE
Sbjct: 421 NHYFAPVDLDIPVEGTGNERKFHGHNAIKLCHLFTKVCSVLKIDLSGVQFNEKPLASNLE 480

Query: 481 GCANVFASFPPCHQEPEDEGEDVKISTRNVRKVSCGQLVFLWGFRDGMTAGLLKAALQGS 540
           GCANVFASFPPC+QEPEDEGEDVKISTRNVRKVSCGQLVFLWGFRDGMTAGLLKAALQGS
Sbjct: 481 GCANVFASFPPCNQEPEDEGEDVKISTRNVRKVSCGQLVFLWGFRDGMTAGLLKAALQGS 540

Query: 541 HEVLCEEFDVRFVGKKCAILVFWQPGLSETFLDAIHSDDILGSLKDMVSEGLRAASYETY 600
           HEVLCEEFDVRFVGKKCAILVFWQPGLSETFLDAIHSD ILGSLKDMVSEGLRAASYETY
Sbjct: 541 HEVLCEEFDVRFVGKKCAILVFWQPGLSETFLDAIHSDGILGSLKDMVSEGLRAASYETY 593

Query: 601 KRVCRLGHWEADLAESLERATSEADCETAQFDIYYSNNSLINLNDL 613
           KRVCRLGHWEADLAESLERATSEADCETA+ DIYYSNNSLINLNDL
Sbjct: 601 KRVCRLGHWEADLAESLERATSEADCETARLDIYYSNNSLINLNDL 593

[Close]

BLAST of MS020722 vs. NCBI nr
Match: XP_022953758.1 (poly(A)-specific ribonuclease PARN-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 1009.2 bits (2608), Expect = 1.5e-290
Identity = 508/620 (81.94%), Postives = 549/620 (88.55%), Query Frame = 0


Query: 1   MASRSSSLHF-HRRLYSTSNQWSVRQVRKSDFHGCLGDLDSHISASDFIALSLQKTGSSS 60
           MASR SSL    RRL++ +NQ SVRQ+R +DF+GCLGDL +HIS SDFIALSLQ TGSSS
Sbjct: 1   MASRFSSLRLQRRRLHTATNQLSVRQIRNTDFYGCLGDLKNHISDSDFIALSLQNTGSSS 60

Query: 61  FPWHRLQPFDTSHTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDELNI 120
           FPWHRLQ FDT  TAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRD+LNI
Sbjct: 61  FPWHRLQSFDTYDTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDDLNI 120

Query: 121 GMPSYSFSCQVSHLTSMAREGFDFDACIYDGISYLSRAQESIAKVRMGCPTPTPSTYVLK 180
           GMPSYSFSCQVSHLTSMAREGFDFDACIYDGISYLSRAQESIAKVR+G    TPSTY +K
Sbjct: 121 GMPSYSFSCQVSHLTSMAREGFDFDACIYDGISYLSRAQESIAKVRIGRSFLTPSTYAVK 180

Query: 181 SSSRQSIADSVFIQRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSEQYGSRPSMTID 240
           SSSRQ+IADSVF+QRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSEQYGSRPSMTID
Sbjct: 181 SSSRQTIADSVFVQRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSEQYGSRPSMTID 240

Query: 241 VCSERQVLLVLELLSDFSDDLVPVVIPAKGGGTQAVRAILTSSKEDKILLEKELQNLEEE 300
           VCSERQVLLVLELLS+FSDDLVPVV PAKGGGTQA+RAILTSSKEDKILLEKELQNLEEE
Sbjct: 241 VCSERQVLLVLELLSEFSDDLVPVVNPAKGGGTQAIRAILTSSKEDKILLEKELQNLEEE 300

Query: 301 ENKRFRGFREVIDMISASQKPIVSYGSLNDFTFIHSKFLAPLPSRIDEFSDSLHSVFPQV 360
           ENK+FRGFREV+D+ISASQKPI+SY SLNDF FIHSKFLAPLP+ +DEF+ SLH VFP+V
Sbjct: 301 ENKKFRGFREVVDIISASQKPILSYNSLNDFAFIHSKFLAPLPTGMDEFASSLHLVFPRV 360

Query: 361 LDVQHLMRNISGLNKPTSISSALSYLKNHYFAPVDLDIPVEGTGNERKFHGHNAIKLCHL 420
           LDV+HL+  I GL+KP SI+SALSYLKNHYFAP+DLDIPVE TGN+RKFHGHNAI LCHL
Sbjct: 361 LDVKHLISKIGGLSKPISIASALSYLKNHYFAPIDLDIPVEATGNDRKFHGHNAILLCHL 420

Query: 421 FTKVCSVLKIDLSSVQFNEKRLASNLEGCANVFASFPPCHQEPEDEGEDVKISTRNVRKV 480
           F K CSVLKIDL  VQ N   LAS L+GCANVF SF P H E ED  ED+KIST+NVRKV
Sbjct: 421 FAKACSVLKIDLGGVQSNNNCLASKLDGCANVFGSFSPDHHESED--EDIKISTKNVRKV 480

Query: 481 SCGQLVFLWGFRDGMTAGLLKAALQGSHEVLCEEFDVRFVGKKCAILVFWQPGLSETFLD 540
           SC  LVFLWGFRDGMTA  +K AL+GSHEV CEEFDVRFV KKCAI+VFWQPGLSE FLD
Sbjct: 481 SCRHLVFLWGFRDGMTAQSMKTALEGSHEVFCEEFDVRFVDKKCAIVVFWQPGLSEAFLD 540

Query: 541 AIHSDDILGSLKDMVSEGLRAASYETYKRVCRLGHWEADLAESLERATS-------EADC 600
           AI+SD I+G LKDMVSEGL+A  YETYKRVCRLG WEADLAESLERA+S       EAD 
Sbjct: 541 AINSDGIVGCLKDMVSEGLKATGYETYKRVCRLGLWEADLAESLERASSEQHHSSFEADP 600

Query: 601 ETAQFDIYYSNNSLINLNDL 613
           ET + DIYYSN+S+INL DL
Sbjct: 601 ETERLDIYYSNDSIINLADL 618

[Close]

BLAST of MS020722 vs. NCBI nr
Match: XP_023547854.1 (poly(A)-specific ribonuclease PARN-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1009.2 bits (2608), Expect = 1.5e-290
Identity = 506/620 (81.61%), Postives = 549/620 (88.55%), Query Frame = 0


Query: 1   MASRSSSLHF-HRRLYSTSNQWSVRQVRKSDFHGCLGDLDSHISASDFIALSLQKTGSSS 60
           MASR SSL    RRL++ +NQ SVRQ+R SDF+GCLGDL +HIS SDFIALSLQ TGSSS
Sbjct: 1   MASRFSSLQLQRRRLHTATNQLSVRQIRNSDFYGCLGDLKNHISDSDFIALSLQNTGSSS 60

Query: 61  FPWHRLQPFDTSHTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDELNI 120
           FPWHRLQ FDT  TAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRD+LNI
Sbjct: 61  FPWHRLQSFDTYDTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDDLNI 120

Query: 121 GMPSYSFSCQVSHLTSMAREGFDFDACIYDGISYLSRAQESIAKVRMGCPTPTPSTYVLK 180
           GMPSYSFSCQVSHLTSMAREGFDFDACIYDGISYLSRAQESIAKVR+G P  TPSTY +K
Sbjct: 121 GMPSYSFSCQVSHLTSMAREGFDFDACIYDGISYLSRAQESIAKVRIGRPILTPSTYAVK 180

Query: 181 SSSRQSIADSVFIQRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSEQYGSRPSMTID 240
           SSSRQ+IADSVF+QRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSEQYGSRPSMTID
Sbjct: 181 SSSRQTIADSVFVQRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSEQYGSRPSMTID 240

Query: 241 VCSERQVLLVLELLSDFSDDLVPVVIPAKGGGTQAVRAILTSSKEDKILLEKELQNLEEE 300
           VCSERQVLLVLELLS+FSDDLVPVVIPAKGGGTQA+RAILTSSKEDKILLEKELQNLE+E
Sbjct: 241 VCSERQVLLVLELLSEFSDDLVPVVIPAKGGGTQAIRAILTSSKEDKILLEKELQNLEDE 300

Query: 301 ENKRFRGFREVIDMISASQKPIVSYGSLNDFTFIHSKFLAPLPSRIDEFSDSLHSVFPQV 360
           ENK+FRGFREV+DMISASQKPI+SY SLNDF FIHSKFLAPLP+ IDEF+ SLH VFP+V
Sbjct: 301 ENKKFRGFREVVDMISASQKPILSYNSLNDFAFIHSKFLAPLPTGIDEFASSLHLVFPRV 360

Query: 361 LDVQHLMRNISGLNKPTSISSALSYLKNHYFAPVDLDIPVEGTGNERKFHGHNAIKLCHL 420
           LDV+HL+  I GL+KP SI+SALSYLKNHYFAP+DLDIP+E TGN+RKFHGHNAI LCHL
Sbjct: 361 LDVKHLISKIGGLSKPISIASALSYLKNHYFAPIDLDIPLEATGNDRKFHGHNAILLCHL 420

Query: 421 FTKVCSVLKIDLSSVQFNEKRLASNLEGCANVFASFPPCHQEPEDEGEDVKISTRNVRKV 480
           F K CSVLKIDL   Q N   LAS L+GCANVF SF P H E +D  +D+KIS +NVRKV
Sbjct: 421 FAKACSVLKIDLGGAQSNNNCLASKLDGCANVFGSFSPDHHESKD--DDIKISMKNVRKV 480

Query: 481 SCGQLVFLWGFRDGMTAGLLKAALQGSHEVLCEEFDVRFVGKKCAILVFWQPGLSETFLD 540
           SC  LVFLWGFRDGMTA  +K AL+GSHEV CEEFDVRFV KKCAI+VFWQPGLSE FLD
Sbjct: 481 SCRHLVFLWGFRDGMTARSMKTALEGSHEVFCEEFDVRFVDKKCAIVVFWQPGLSEAFLD 540

Query: 541 AIHSDDILGSLKDMVSEGLRAASYETYKRVCRLGHWEADLAESLERATS-------EADC 600
           AI+SD I+G LKDMVSEGL+A  YETYKRVCRLG WEADLAESLERA+S       EAD 
Sbjct: 541 AINSDGIVGCLKDMVSEGLKATGYETYKRVCRLGLWEADLAESLERASSEQHHSSFEADP 600

Query: 601 ETAQFDIYYSNNSLINLNDL 613
           ET + D+YYSN+S+INL DL
Sbjct: 601 ETERLDMYYSNDSIINLADL 618

[Close]

BLAST of MS020722 vs. ExPASy Swiss-Prot
Match: Q8W4C3 (Poly(A)-specific ribonuclease PARN-like OS=Arabidopsis thaliana OX=3702 GN=At3g25430 PE=2 SV=1)

HSP 1 Score: 633.3 bits (1632), Expect = 2.9e-180
Identity = 328/604 (54.30%), Postives = 439/604 (72.68%), Query Frame = 0


Query: 20  QWSVRQVRKSDFHGCLGDLDSHISASDFIALSLQKTGSSSFPWHRLQPFDTSHTAYCKAK 79
           +WSV+QV+KS+FH  L ++ + I +SDFIALSLQ TGS +  WHR+   DT  T+Y KAK
Sbjct: 23  RWSVKQVKKSNFHVTLDEIRTSIDSSDFIALSLQNTGSYAAAWHRVSAIDTPQTSYLKAK 82

Query: 80  YAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDELNIGMPSYSFSCQVSHLTSMARE 139
           YAAE++QILQFALCPFS++ SKL  HPYNFHLFPRDEL  GMPSYSFSCQ S LT+MARE
Sbjct: 83  YAAERYQILQFALCPFSLQGSKLTVHPYNFHLFPRDELKCGMPSYSFSCQASRLTAMARE 142

Query: 140 GFDFDACIYDGISYLSRAQESIAKVRMGCPTPTPSTYVLKSSSRQSIADSVFIQRVKSRV 199
           GFDF+ CIY+GISYLSRAQES +K     P    S  V  SSS  ++AD+VF+ R++SRV
Sbjct: 143 GFDFNICIYEGISYLSRAQESASKFLSENPILADSVTV--SSSPATVADTVFVGRIRSRV 202

Query: 200 KNWKDAC-NSSTKT-NDALLSSLKKLIIGSEQYGSRPSMTIDVCSERQVLLVLELLSDFS 259
           KNW+ +C +S +KT +D L+SSL++L++GSEQYGSR  +TIDVCSERQV L+LE+L++FS
Sbjct: 203 KNWRQSCIDSGSKTGDDDLVSSLRRLVLGSEQYGSRLCLTIDVCSERQVQLILEMLTEFS 262

Query: 260 DDLVPVVIPAKGGGTQAVRAILTSSKEDKILLEKELQNLEEEENKRFRGFREVIDMISAS 319
           DD+VP+++ +K  GTQAVR +  SSKEDK L ++EL++LE+EEN+R RGFREV+D IS+S
Sbjct: 263 DDVVPLLVASKSRGTQAVRTVFMSSKEDKDLFKRELKDLEKEENRRVRGFREVVDFISSS 322

Query: 320 QKPIVSYGSLNDFTFIHSKFLAPLPSRIDEFSDSLHSVFPQVLDVQHLMRNISGLNKPTS 379
           QKP+VS   L+DFT IH+KFL PLPS +D+FS SL S FP V+D+   M+ IS L+  ++
Sbjct: 323 QKPVVSQNYLSDFTSIHAKFLGPLPSNVDDFSSSLSSAFPNVVDLSQFMKEISPLSNISN 382

Query: 380 ISSALSYLKNHYFAPVDLDIPVEG----TGNERKFHGHNAIKLCHLFTKVCSVLKIDLSS 439
           + +A+S L N +FAPVD+++  +G         + HG NA+ +  LF K+C++ K DLS+
Sbjct: 383 LPAAMSSL-NRFFAPVDVEVANQGCPVKLDEGHQSHGQNAVMISQLFAKLCTIQKSDLST 442

Query: 440 VQFNEKRLASNLEGCANVFASFPPCHQEPEDEGEDVKISTRNVRKVSCGQLVFLWGFRDG 499
           +Q NE   A   +  AN   S   C +   D  E+VK+ ++N R+VS   LVF+WG    
Sbjct: 443 IQSNEDFQALASDEHAN---SVTSCSKNAGD--ENVKVWSKNSRRVSSENLVFIWGLGKK 502

Query: 500 MTAGLLKAALQGSHEVLCEEFDVRFVGKKCAILVFWQPGLSETFLDAIHSDDIL-GSLKD 559
           MTA  LK  LQ SH V   EFDV+++ +  AILVFW+ G SETFL A+++++ L GSL++
Sbjct: 503 MTAAKLKNVLQKSHPVFAREFDVKYIDRSSAILVFWESGPSETFLSAVNNEEQLDGSLRE 562

Query: 560 MVSEGLRAASYETYKRVCRLGHWEADLAESLERA----TSEADCETAQFDIYYSNNSLIN 613
           MV+EGLR A YETYKR CRLG WEADLAESL++A     ++ D +T   +I +SN   IN
Sbjct: 563 MVAEGLRGAGYETYKRACRLGFWEADLAESLDKALESSDTDPDSDTKPSEIDWSNELAIN 618

[Close]

BLAST of MS020722 vs. ExPASy Swiss-Prot
Match: Q9LG26 (Poly(A)-specific ribonuclease PARN OS=Arabidopsis thaliana OX=3702 GN=PARN PE=1 SV=2)

HSP 1 Score: 202.6 bits (514), Expect = 1.3e-50
Identity = 172/646 (26.63%), Postives = 293/646 (45.36%), Query Frame = 0


Query: 16  STSNQWSVRQVRKSDFHGCLGDLDSHISASDFIALSLQKTGSSSFPWHRLQPFDTSHTAY 75
           S +  + ++ V +S+F   L DL S + A+DF+A+ L+ TG +S PW     FD     Y
Sbjct: 31  SATAAFPLKHVTRSNFETTLNDLRSLVKAADFVAIDLEMTGVTSAPWRDSLEFDRYDVRY 90

Query: 76  CKAKYAAEKFQILQFALCPF--SVRESKLIAHPYNFHLFPRDELNIGMPSYSFSCQVSHL 135
            K K +AEKF ++QF +CPF    R    +++P+NF +FPR EL    P++ F CQ + +
Sbjct: 91  LKVKDSAEKFAVVQFGVCPFRWDSRTQSFVSYPHNFFVFPRQELTFDPPAHEFLCQTTSM 150

Query: 136 TSMAREGFDFDACIYDGISYLSRAQESIAKVRMGC---PTPTPSTYVLKSSSRQSIADSV 195
             +A+  FDF+ CI++GISYLSR +E  A  R+          S+   +      +AD +
Sbjct: 151 DFLAKYQFDFNTCIHEGISYLSRREEEEASKRLKMLHGEDGIDSSGETEELKLVRLADVL 210

Query: 196 FIQRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSEQ------YGSRPSMTIDVCSER 255
           F  R++  +  W+         +    S   ++  GS Q      +  RP++++   +  
Sbjct: 211 FAARMEKLLNEWRSGLLHGGNAS----SEFPRISNGSNQSMETVFHHMRPALSLKGFTSH 270

Query: 256 QVLLVLELLSDFSDDLVPVVIPAKGGGTQAVRAILTSSKEDKILLEKELQN----LEEEE 315
           Q+ ++  +L     DLV +    K   ++ +  + T S  DK  L KE ++    L E +
Sbjct: 271 QLRVLNSVLRKHFGDLVYIHSNDKSSSSRDI-VVYTDSDSDKENLMKEAKDERKRLAERK 330

Query: 316 NKRFRGFREVIDMISASQKPIVSYGSLNDFTFIHSKFLAPLPSRIDEFSDSLHSVFPQVL 375
            +   GFR+VID++++ +K IV +    D   ++SKF+ PLPS  ++F  S++S FP ++
Sbjct: 331 IQSAIGFRQVIDLLASEKKLIVGHNCFLDIAHVYSKFVGPLPSTAEKFVASINSHFPYIV 390

Query: 376 DVQHLMRNISGL------NKPTSISSALSYL-----------KNHYFAPVDLDIPVEG-- 435
           D + L+ N++ +         TS+SSA S L            +     V++D+ ++   
Sbjct: 391 DTKILL-NVNPMLHQRMKKSSTSLSSAFSSLCPQIEFSSRSSDSFLQQRVNIDVEIDNVR 450

Query: 436 ----TGNERKFHGHNAIKLCHLFTKVCSVLKIDLSS-VQFNEKRLASNLEGCAN-VFASF 495
                   +   G++A     +F + C+ L  D     Q ++      LE   N ++ S+
Sbjct: 451 CSNWNAGGKHEAGYDAFMTGCIFAQACNHLGFDFKQHSQLDDFAQNEKLEKYINRLYLSW 510

Query: 496 PPCHQEPEDEGEDVKISTRN-------VRKVSCGQLVFLWGFRDGMTAGLLKAALQGSHE 555
                     G+ + + T +       V K     +V +W F   + A       +G  E
Sbjct: 511 --------TRGDIIDLRTGHSNADNWRVSKFKYENIVLIWNFPRKLKA-------RGIKE 570

Query: 556 VLCEEF------DVRFVGKKCAILVFWQPGLSETFL---DAIHSDD----ILGSLKDMVS 595
            +C+ F       V  V      ++F    L   FL     + S D    +L  L  ++ 
Sbjct: 571 CICKAFGSASVTSVYHVDDSAVFVLFKNSELVWDFLALKRQLESSDGPVSVLHPLSKILE 630

[Close]

BLAST of MS020722 vs. ExPASy Swiss-Prot
Match: Q90ZA1 (Poly(A)-specific ribonuclease PARN OS=Xenopus laevis OX=8355 GN=parn PE=1 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 2.5e-22
Identity = 101/391 (25.83%), Postives = 176/391 (45.01%), Query Frame = 0


Query: 25  QVRKSDFHGCLGDLDSHISASDFIALSLQKTGSSSFP--WHRLQPFDTSHTAYCKAKYAA 84
           ++ +S+F   L  +   I  +DF+A+  + +G S  P        FDT    Y K K  +
Sbjct: 2   EITRSNFKDTLPKVYKAIEEADFLAIDGEFSGISDGPSVSTLTNGFDTPEERYTKLKKHS 61

Query: 85  EKFQILQFALCPFSV--RESKLIAHPYNFHLFPRDELNIGMPSYSFSCQVSHLTSMAREG 144
            +F + QF LC F+    E+K +   +NF++FP+   N   P   F CQ S +  +A +G
Sbjct: 62  MEFLLFQFGLCTFNYDNTEAKYLMKSFNFYIFPK-PFNRNSPDKKFVCQSSSIDFLANQG 121

Query: 145 FDFDACIYDGISYLSRAQESIAK-----VRMGCPTPTPSTYVLKSSSRQSIA----DSVF 204
           FDF+    +GI YL++ +E + +      R      +  +Y+  +SS+  ++       F
Sbjct: 122 FDFNKVFRNGIPYLNQEEERVLRDQYEDRRSQSNGASTMSYISPNSSKTPVSIPDEQKGF 181

Query: 205 IQRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSEQYGSRPSMTIDVCSERQVLLVLE 264
           I +V  RV+++                      + +EQ     SM ++ C+  Q  L+ +
Sbjct: 182 IDKVVERVEDF----------------------LKNEQ----KSMNVEPCTGYQRKLIYQ 241

Query: 265 LLSDFSDDLVPVVIPAKGGGTQAVRAILTSSK---EDKILLEKELQNLEEEENKRFRGFR 324
            L    +   P  I  +   ++     +  SK   E++  +E++ Q  E EE     GF 
Sbjct: 242 TL----NWKYPRGIHVETVESEKKERYIVISKVDEEERKRMEQQKQAKEREELDDAVGFS 301

Query: 325 EVIDMISASQKPIVSYGSLNDFTFIHSKFLAPLPSRIDEFSDSLHSVFPQVLDVQHLMRN 384
            +I  IS+S K +V +  L D      +F   LP  ++EF +  + VFP+VLD + LM +
Sbjct: 302 RIIQAISSSGKLVVGHNMLLDVMHTIHQFFCQLPDELNEFKEVTNCVFPRVLDTK-LMAS 360

Query: 385 ISGLNK---PTSISSALSYLKNHYFAPVDLD 397
            +   +    TS++     LK   F P  +D
Sbjct: 362 TNPFKEIIYNTSLAELEKRLKEAPFKPPKVD 360

[Close]

BLAST of MS020722 vs. ExPASy Swiss-Prot
Match: B2RXZ1 (Poly(A)-specific ribonuclease PNLDC1 OS=Mus musculus OX=10090 GN=Pnldc1 PE=1 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 6.4e-18
Identity = 90/350 (25.71%), Postives = 151/350 (43.14%), Query Frame = 0


Query: 26  VRKSDFHGCLGDLDSHISASDFIALSLQKTG--SSSFPWHRLQPFDTSHTAYCKAKYAAE 85
           V   +F   L  L   ++ +DF+ L ++ TG  S+     ++  FD     Y K + + +
Sbjct: 3   VGADEFEQSLPLLQELVAGADFVGLDIEFTGLRSNLSRPQQISLFDLPSEWYLKTRQSVQ 62

Query: 86  KFQILQFALCPFSVRE---SKLIAHPYNFHLFPRDELNIGMPSYSFSCQVSHLTSMAREG 145
           +F I Q  L  FS  E   +K +AH  NF LFP      G+    FS Q S +  + + G
Sbjct: 63  QFTICQIGLSMFSSIEGESNKYVAHSCNFFLFP---TTFGILDSEFSFQASSVQFLNQYG 122

Query: 146 FDFDACIYDGISYLSRAQESIAKVRMGCPTPTPSTYVLKSSSR-QSIADSVFIQRVKSRV 205
           FD++  + +GI Y++  QE   K             +L+ + R +S  D   I+ V  +V
Sbjct: 123 FDYNKFLKNGIPYMNEEQEKKIK-----------HSILRGNWRVRSSLDKDQIKVVIDKV 182

Query: 206 KNWKDACNSSTKTNDALLSSLKKLIIGSEQYGSRPSMTIDVCSERQVLLVLELLSDFSDD 265
             W D      +                    + P +      E Q++L   L + ++  
Sbjct: 183 TQWLDLAEEGDQM-------------------TLPGIAGFQAFEVQLVLRQALPNIWTVL 242

Query: 266 LVPVVIPAKGGGTQAVRAILTSSKEDKILLEKELQNLEEEENKRFRGFREVIDMISASQK 325
               VI  K   +Q  R  L  +  D++   KE   L        RGF     M+  +QK
Sbjct: 243 KEEWVIVKK--VSQPQRWYLEHASCDQVSCWKEQILLSA------RGFSVFFQMLVKAQK 302

Query: 326 PIVSYGSLNDFTFIHSKFLAPLPSRIDEFSDSLHSVFPQVLDVQHLMRNI 370
           P+V +  + D   +H KF  PLP   D+F  ++HS+FP ++D +++ ++I
Sbjct: 303 PLVGHNMMMDLLHLHEKFFRPLPESYDQFKQNIHSLFPVLIDTKNVTKDI 311

[Close]

BLAST of MS020722 vs. ExPASy Swiss-Prot
Match: P69341 (Poly(A)-specific ribonuclease PARN OS=Bos taurus OX=9913 GN=PARN PE=1 SV=2)

HSP 1 Score: 92.8 bits (229), Expect = 1.4e-17
Identity = 96/377 (25.46%), Postives = 160/377 (42.44%), Query Frame = 0


Query: 25  QVRKSDFHGCLGDLDSHISASDFIALSLQKTGSSSFP--WHRLQPFDTSHTAYCKAKYAA 84
           ++ +S+F   L  +   I  +DF A+  + +G S  P        FDT    Y K K  +
Sbjct: 2   EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKHS 61

Query: 85  EKFQILQFALCPF--SVRESKLIAHPYNFHLFPRDELNIGMPSYSFSCQVSHLTSMAREG 144
             F + QF LC F     +SK I   +NF++FP+   N   P   F CQ S +  +A +G
Sbjct: 62  MDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQG 121

Query: 145 FDFDACIYDGISYLSRAQESIAKVRMGCPTPTPSTYVLKSSSRQSIADSVFIQRVKSRVK 204
           FDF+    +GI YL++ +E   +            Y  K S  QS           +  K
Sbjct: 122 FDFNKVFRNGIPYLNQEEERQLR----------EQYDEKRS--QSNGAGALSYTSPNTSK 181

Query: 205 NWKDACNSSTKTNDALLSSLKKLIIGSEQYGSRPSMTIDVCSERQVLLVLELLSDFSDDL 264
                 +   K  D ++  ++ L+   E      ++ ++ C+  Q  L+ + LS      
Sbjct: 182 CPVTIPDDQKKFIDQVVEKIEDLLQSEE----NKNLDLEPCTGFQRKLIYQTLS----WK 241

Query: 265 VPVVIPAKGGGTQAVRAILTSSK---EDKILLEKELQNLEEEENKRFRGFREVIDMISAS 324
            P  I  +   T+     +  SK   E++   E++    E+EE     GF  VI  I+ S
Sbjct: 242 YPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIANS 301

Query: 325 QKPIVSYGSLNDFTFIHSKFLAPLPSRIDEFSDSLHSVFPQVLDVQHL--MRNISGLNKP 384
            K ++ +  L D      +F  PLP+ ++EF +    VFP++LD + +   +    +   
Sbjct: 302 GKLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTCVFPRLLDTKLMASTQPFKDIINN 357

Query: 385 TSISSALSYLKNHYFAP 393
           TS++     LK   F P
Sbjct: 362 TSLAELEKRLKETPFNP 357

[Close]

BLAST of MS020722 vs. ExPASy TrEMBL
Match: A0A6J1CPR7 (poly(A)-specific ribonuclease PARN-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111013450 PE=3 SV=1)

HSP 1 Score: 1210.3 bits (3130), Expect = 0.0e+00
Identity = 600/612 (98.04%), Postives = 604/612 (98.69%), Query Frame = 0


Query: 1   MASRSSSLHFHRRLYSTSNQWSVRQVRKSDFHGCLGDLDSHISASDFIALSLQKTGSSSF 60
           MASRSSSLHFHRRLYST NQWSVRQVRKSDFHGCLGDLD HISASDFIALSLQKTGSSSF
Sbjct: 1   MASRSSSLHFHRRLYSTFNQWSVRQVRKSDFHGCLGDLDGHISASDFIALSLQKTGSSSF 60

Query: 61  PWHRLQPFDTSHTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDELNIG 120
           PWHRLQPFDTSHTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDELNIG
Sbjct: 61  PWHRLQPFDTSHTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDELNIG 120

Query: 121 MPSYSFSCQVSHLTSMAREGFDFDACIYDGISYLSRAQESIAKVRMGCPTPTPSTYVLKS 180
           MPSYSFSCQVSHLTSMAREGFDFDACIYDGISYLSRAQESIAKVRMGCPTPT STYVLKS
Sbjct: 121 MPSYSFSCQVSHLTSMAREGFDFDACIYDGISYLSRAQESIAKVRMGCPTPTTSTYVLKS 180

Query: 181 SSRQSIADSVFIQRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSEQYGSRPSMTIDV 240
           SSRQSIADSVFIQRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSEQYGSRPSMTIDV
Sbjct: 181 SSRQSIADSVFIQRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSEQYGSRPSMTIDV 240

Query: 241 CSERQVLLVLELLSDFSDDLVPVVIPAKGGGTQAVRAILTSSKEDKILLEKELQNLEEEE 300
           CSERQVLLVLELLSDFSDDLVPVVIPAKGGGTQA+RAILTSSK+DKILLEKELQNLEEEE
Sbjct: 241 CSERQVLLVLELLSDFSDDLVPVVIPAKGGGTQAIRAILTSSKDDKILLEKELQNLEEEE 300

Query: 301 NKRFRGFREVIDMISASQKPIVSYGSLNDFTFIHSKFLAPLPSRIDEFSDSLHSVFPQVL 360
           NKRFRGFREVIDMISASQKPIVSYGSLNDFTFIHSKFLAPLP RIDEFSDSLHSVFPQVL
Sbjct: 301 NKRFRGFREVIDMISASQKPIVSYGSLNDFTFIHSKFLAPLPPRIDEFSDSLHSVFPQVL 360

Query: 361 DVQHLMRNISGLNKPTSISSALSYLKNHYFAPVDLDIPVEGTGNERKFHGHNAIKLCHLF 420
           DVQHLMRNISGLNKPTSISSALSYLKNHYFAPVDLDIPVEGTGNERKFHGHNAIKLCHLF
Sbjct: 361 DVQHLMRNISGLNKPTSISSALSYLKNHYFAPVDLDIPVEGTGNERKFHGHNAIKLCHLF 420

Query: 421 TKVCSVLKIDLSSVQFNEKRLASNLEGCANVFASFPPCHQEPEDEGEDVKISTRNVRKVS 480
           TKVCSVLKIDLS VQFNEK LASNLEGCANVFASFPPC+QEPEDEGEDVKISTRNVRKVS
Sbjct: 421 TKVCSVLKIDLSGVQFNEKPLASNLEGCANVFASFPPCNQEPEDEGEDVKISTRNVRKVS 480

Query: 481 CGQLVFLWGFRDGMTAGLLKAALQGSHEVLCEEFDVRFVGKKCAILVFWQPGLSETFLDA 540
           CGQLVFLWGFRDGMTAGLLKAALQGSHEVLCEEFDVRFVGKKCAILVFWQPGLSETFLDA
Sbjct: 481 CGQLVFLWGFRDGMTAGLLKAALQGSHEVLCEEFDVRFVGKKCAILVFWQPGLSETFLDA 540

Query: 541 IHSDDILGSLKDMVSEGLRAASYETYKRVCRLGHWEADLAESLERATSEADCETAQFDIY 600
           IHSD ILGSLKDMVSEGLRAASYETYKRVCRLGHWEADLAESLERATSEADCETA+ DIY
Sbjct: 541 IHSDGILGSLKDMVSEGLRAASYETYKRVCRLGHWEADLAESLERATSEADCETARLDIY 600

Query: 601 YSNNSLINLNDL 613
           YSNNSLINLNDL
Sbjct: 601 YSNNSLINLNDL 612

[Close]

BLAST of MS020722 vs. ExPASy TrEMBL
Match: A0A6J1CR29 (poly(A)-specific ribonuclease PARN-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111013450 PE=3 SV=1)

HSP 1 Score: 1192.9 bits (3085), Expect = 0.0e+00
Identity = 600/646 (92.88%), Postives = 604/646 (93.50%), Query Frame = 0


Query: 1   MASRSSSLHFHRRLYSTSNQWSVRQVRKSDFHGCLGDLDSHISASDFIALSLQKTGSSSF 60
           MASRSSSLHFHRRLYST NQWSVRQVRKSDFHGCLGDLD HISASDFIALSLQKTGSSSF
Sbjct: 1   MASRSSSLHFHRRLYSTFNQWSVRQVRKSDFHGCLGDLDGHISASDFIALSLQKTGSSSF 60

Query: 61  PWHRLQPFDTSHTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDELNIG 120
           PWHRLQPFDTSHTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDELNIG
Sbjct: 61  PWHRLQPFDTSHTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDELNIG 120

Query: 121 MPSYSFSCQVSHLTSMAREGFDFDACIYDGISYLSRAQESIAKVRMGCPTPTPSTYVLKS 180
           MPSYSFSCQVSHLTSMAREGFDFDACIYDGISYLSRAQESIAKVRMGCPTPT STYVLKS
Sbjct: 121 MPSYSFSCQVSHLTSMAREGFDFDACIYDGISYLSRAQESIAKVRMGCPTPTTSTYVLKS 180

Query: 181 SSRQSIADSVFIQRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSEQYGSRPSMTIDV 240
           SSRQSIADSVFIQRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSEQYGSRPSMTIDV
Sbjct: 181 SSRQSIADSVFIQRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSEQYGSRPSMTIDV 240

Query: 241 CSERQVLLVLELLSDFSDDLVPVVIPAKGGGTQAVRAILTSSKEDKILLEKELQNLEEEE 300
           CSERQVLLVLELLSDFSDDLVPVVIPAKGGGTQA+RAILTSSK+DKILLEKELQNLEEEE
Sbjct: 241 CSERQVLLVLELLSDFSDDLVPVVIPAKGGGTQAIRAILTSSKDDKILLEKELQNLEEEE 300

Query: 301 NKRFRGFREVIDMISASQKPIVSYGSLN-------------------------------- 360
           NKRFRGFREVIDMISASQKPIVSYGSLN                                
Sbjct: 301 NKRFRGFREVIDMISASQKPIVSYGSLNGVYLIYSLLLVGLLVFFLFLLLSSFSSNAFLL 360

Query: 361 --DFTFIHSKFLAPLPSRIDEFSDSLHSVFPQVLDVQHLMRNISGLNKPTSISSALSYLK 420
             DFTFIHSKFLAPLP RIDEFSDSLHSVFPQVLDVQHLMRNISGLNKPTSISSALSYLK
Sbjct: 361 HADFTFIHSKFLAPLPPRIDEFSDSLHSVFPQVLDVQHLMRNISGLNKPTSISSALSYLK 420

Query: 421 NHYFAPVDLDIPVEGTGNERKFHGHNAIKLCHLFTKVCSVLKIDLSSVQFNEKRLASNLE 480
           NHYFAPVDLDIPVEGTGNERKFHGHNAIKLCHLFTKVCSVLKIDLS VQFNEK LASNLE
Sbjct: 421 NHYFAPVDLDIPVEGTGNERKFHGHNAIKLCHLFTKVCSVLKIDLSGVQFNEKPLASNLE 480

Query: 481 GCANVFASFPPCHQEPEDEGEDVKISTRNVRKVSCGQLVFLWGFRDGMTAGLLKAALQGS 540
           GCANVFASFPPC+QEPEDEGEDVKISTRNVRKVSCGQLVFLWGFRDGMTAGLLKAALQGS
Sbjct: 481 GCANVFASFPPCNQEPEDEGEDVKISTRNVRKVSCGQLVFLWGFRDGMTAGLLKAALQGS 540

Query: 541 HEVLCEEFDVRFVGKKCAILVFWQPGLSETFLDAIHSDDILGSLKDMVSEGLRAASYETY 600
           HEVLCEEFDVRFVGKKCAILVFWQPGLSETFLDAIHSD ILGSLKDMVSEGLRAASYETY
Sbjct: 541 HEVLCEEFDVRFVGKKCAILVFWQPGLSETFLDAIHSDGILGSLKDMVSEGLRAASYETY 600

Query: 601 KRVCRLGHWEADLAESLERATSEADCETAQFDIYYSNNSLINLNDL 613
           KRVCRLGHWEADLAESLERATSEADCETA+ DIYYSNNSLINLNDL
Sbjct: 601 KRVCRLGHWEADLAESLERATSEADCETARLDIYYSNNSLINLNDL 646

[Close]

BLAST of MS020722 vs. ExPASy TrEMBL
Match: A0A6J1CP73 (poly(A)-specific ribonuclease PARN-like isoform X3 OS=Momordica charantia OX=3673 GN=LOC111013450 PE=3 SV=1)

HSP 1 Score: 1069.7 bits (2765), Expect = 4.6e-309
Identity = 547/646 (84.67%), Postives = 551/646 (85.29%), Query Frame = 0


Query: 1   MASRSSSLHFHRRLYSTSNQWSVRQVRKSDFHGCLGDLDSHISASDFIALSLQKTGSSSF 60
           MASRSSSLHFHRRLYST NQWSVRQVRKSDFHGCLGDLD HISASDFIALSLQKTGSSSF
Sbjct: 1   MASRSSSLHFHRRLYSTFNQWSVRQVRKSDFHGCLGDLDGHISASDFIALSLQKTGSSSF 60

Query: 61  PWHRLQPFDTSHTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDELNIG 120
           PWHRLQPFDTSHTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDELNIG
Sbjct: 61  PWHRLQPFDTSHTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDELNIG 120

Query: 121 MPSYSFSCQVSHLTSMAREGFDFDACIYDGISYLSRAQESIAKVRMGCPTPTPSTYVLKS 180
           MPSYSFSCQVSHLTSMAREGFDFDACIYDGISYLSRAQESIAKVRMGCPTPT STYVLKS
Sbjct: 121 MPSYSFSCQVSHLTSMAREGFDFDACIYDGISYLSRAQESIAKVRMGCPTPTTSTYVLKS 180

Query: 181 SSRQSIADSVFIQRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSEQYGSRPSMTIDV 240
           SSRQSIADSVFIQRVKSRVKNWKDACNSSTKTN                           
Sbjct: 181 SSRQSIADSVFIQRVKSRVKNWKDACNSSTKTN--------------------------- 240

Query: 241 CSERQVLLVLELLSDFSDDLVPVVIPAKGGGTQAVRAILTSSKEDKILLEKELQNLEEEE 300
                                     AKGGGTQA+RAILTSSK+DKILLEKELQNLEEEE
Sbjct: 241 --------------------------AKGGGTQAIRAILTSSKDDKILLEKELQNLEEEE 300

Query: 301 NKRFRGFREVIDMISASQKPIVSYGSLN-------------------------------- 360
           NKRFRGFREVIDMISASQKPIVSYGSLN                                
Sbjct: 301 NKRFRGFREVIDMISASQKPIVSYGSLNGVYLIYSLLLVGLLVFFLFLLLSSFSSNAFLL 360

Query: 361 --DFTFIHSKFLAPLPSRIDEFSDSLHSVFPQVLDVQHLMRNISGLNKPTSISSALSYLK 420
             DFTFIHSKFLAPLP RIDEFSDSLHSVFPQVLDVQHLMRNISGLNKPTSISSALSYLK
Sbjct: 361 HADFTFIHSKFLAPLPPRIDEFSDSLHSVFPQVLDVQHLMRNISGLNKPTSISSALSYLK 420

Query: 421 NHYFAPVDLDIPVEGTGNERKFHGHNAIKLCHLFTKVCSVLKIDLSSVQFNEKRLASNLE 480
           NHYFAPVDLDIPVEGTGNERKFHGHNAIKLCHLFTKVCSVLKIDLS VQFNEK LASNLE
Sbjct: 421 NHYFAPVDLDIPVEGTGNERKFHGHNAIKLCHLFTKVCSVLKIDLSGVQFNEKPLASNLE 480

Query: 481 GCANVFASFPPCHQEPEDEGEDVKISTRNVRKVSCGQLVFLWGFRDGMTAGLLKAALQGS 540
           GCANVFASFPPC+QEPEDEGEDVKISTRNVRKVSCGQLVFLWGFRDGMTAGLLKAALQGS
Sbjct: 481 GCANVFASFPPCNQEPEDEGEDVKISTRNVRKVSCGQLVFLWGFRDGMTAGLLKAALQGS 540

Query: 541 HEVLCEEFDVRFVGKKCAILVFWQPGLSETFLDAIHSDDILGSLKDMVSEGLRAASYETY 600
           HEVLCEEFDVRFVGKKCAILVFWQPGLSETFLDAIHSD ILGSLKDMVSEGLRAASYETY
Sbjct: 541 HEVLCEEFDVRFVGKKCAILVFWQPGLSETFLDAIHSDGILGSLKDMVSEGLRAASYETY 593

Query: 601 KRVCRLGHWEADLAESLERATSEADCETAQFDIYYSNNSLINLNDL 613
           KRVCRLGHWEADLAESLERATSEADCETA+ DIYYSNNSLINLNDL
Sbjct: 601 KRVCRLGHWEADLAESLERATSEADCETARLDIYYSNNSLINLNDL 593

[Close]

BLAST of MS020722 vs. ExPASy TrEMBL
Match: A0A6J1GP80 (poly(A)-specific ribonuclease PARN-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111456191 PE=3 SV=1)

HSP 1 Score: 1009.2 bits (2608), Expect = 7.3e-291
Identity = 508/620 (81.94%), Postives = 549/620 (88.55%), Query Frame = 0


Query: 1   MASRSSSLHF-HRRLYSTSNQWSVRQVRKSDFHGCLGDLDSHISASDFIALSLQKTGSSS 60
           MASR SSL    RRL++ +NQ SVRQ+R +DF+GCLGDL +HIS SDFIALSLQ TGSSS
Sbjct: 1   MASRFSSLRLQRRRLHTATNQLSVRQIRNTDFYGCLGDLKNHISDSDFIALSLQNTGSSS 60

Query: 61  FPWHRLQPFDTSHTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDELNI 120
           FPWHRLQ FDT  TAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRD+LNI
Sbjct: 61  FPWHRLQSFDTYDTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDDLNI 120

Query: 121 GMPSYSFSCQVSHLTSMAREGFDFDACIYDGISYLSRAQESIAKVRMGCPTPTPSTYVLK 180
           GMPSYSFSCQVSHLTSMAREGFDFDACIYDGISYLSRAQESIAKVR+G    TPSTY +K
Sbjct: 121 GMPSYSFSCQVSHLTSMAREGFDFDACIYDGISYLSRAQESIAKVRIGRSFLTPSTYAVK 180

Query: 181 SSSRQSIADSVFIQRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSEQYGSRPSMTID 240
           SSSRQ+IADSVF+QRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSEQYGSRPSMTID
Sbjct: 181 SSSRQTIADSVFVQRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSEQYGSRPSMTID 240

Query: 241 VCSERQVLLVLELLSDFSDDLVPVVIPAKGGGTQAVRAILTSSKEDKILLEKELQNLEEE 300
           VCSERQVLLVLELLS+FSDDLVPVV PAKGGGTQA+RAILTSSKEDKILLEKELQNLEEE
Sbjct: 241 VCSERQVLLVLELLSEFSDDLVPVVNPAKGGGTQAIRAILTSSKEDKILLEKELQNLEEE 300

Query: 301 ENKRFRGFREVIDMISASQKPIVSYGSLNDFTFIHSKFLAPLPSRIDEFSDSLHSVFPQV 360
           ENK+FRGFREV+D+ISASQKPI+SY SLNDF FIHSKFLAPLP+ +DEF+ SLH VFP+V
Sbjct: 301 ENKKFRGFREVVDIISASQKPILSYNSLNDFAFIHSKFLAPLPTGMDEFASSLHLVFPRV 360

Query: 361 LDVQHLMRNISGLNKPTSISSALSYLKNHYFAPVDLDIPVEGTGNERKFHGHNAIKLCHL 420
           LDV+HL+  I GL+KP SI+SALSYLKNHYFAP+DLDIPVE TGN+RKFHGHNAI LCHL
Sbjct: 361 LDVKHLISKIGGLSKPISIASALSYLKNHYFAPIDLDIPVEATGNDRKFHGHNAILLCHL 420

Query: 421 FTKVCSVLKIDLSSVQFNEKRLASNLEGCANVFASFPPCHQEPEDEGEDVKISTRNVRKV 480
           F K CSVLKIDL  VQ N   LAS L+GCANVF SF P H E ED  ED+KIST+NVRKV
Sbjct: 421 FAKACSVLKIDLGGVQSNNNCLASKLDGCANVFGSFSPDHHESED--EDIKISTKNVRKV 480

Query: 481 SCGQLVFLWGFRDGMTAGLLKAALQGSHEVLCEEFDVRFVGKKCAILVFWQPGLSETFLD 540
           SC  LVFLWGFRDGMTA  +K AL+GSHEV CEEFDVRFV KKCAI+VFWQPGLSE FLD
Sbjct: 481 SCRHLVFLWGFRDGMTAQSMKTALEGSHEVFCEEFDVRFVDKKCAIVVFWQPGLSEAFLD 540

Query: 541 AIHSDDILGSLKDMVSEGLRAASYETYKRVCRLGHWEADLAESLERATS-------EADC 600
           AI+SD I+G LKDMVSEGL+A  YETYKRVCRLG WEADLAESLERA+S       EAD 
Sbjct: 541 AINSDGIVGCLKDMVSEGLKATGYETYKRVCRLGLWEADLAESLERASSEQHHSSFEADP 600

Query: 601 ETAQFDIYYSNNSLINLNDL 613
           ET + DIYYSN+S+INL DL
Sbjct: 601 ETERLDIYYSNDSIINLADL 618

[Close]

BLAST of MS020722 vs. ExPASy TrEMBL
Match: A0A6J1JW45 (poly(A)-specific ribonuclease PARN-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111488047 PE=3 SV=1)

HSP 1 Score: 1005.0 bits (2597), Expect = 1.4e-289
Identity = 507/620 (81.77%), Postives = 548/620 (88.39%), Query Frame = 0


Query: 1   MASRSSSLHF-HRRLYSTSNQWSVRQVRKSDFHGCLGDLDSHISASDFIALSLQKTGSSS 60
           MASR SSL    RRL+  +NQ SVRQ+R SDF+GCLGDL +HIS SDFIALSLQ TGSSS
Sbjct: 1   MASRFSSLQLQRRRLHIATNQLSVRQIRNSDFYGCLGDLKNHISDSDFIALSLQNTGSSS 60

Query: 61  FPWHRLQPFDTSHTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDELNI 120
           FPWHRLQ FDT  TAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRD+LNI
Sbjct: 61  FPWHRLQSFDTYDTAYCKAKYAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDDLNI 120

Query: 121 GMPSYSFSCQVSHLTSMAREGFDFDACIYDGISYLSRAQESIAKVRMGCPTPTPSTYVLK 180
           GMPSYSFSCQVSHLTSMA EGFDFDACIYDGISYLSRAQESIAKVR+G P  TPSTY +K
Sbjct: 121 GMPSYSFSCQVSHLTSMAHEGFDFDACIYDGISYLSRAQESIAKVRIGRPILTPSTYDVK 180

Query: 181 SSSRQSIADSVFIQRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSEQYGSRPSMTID 240
           SSSRQ+IADSVF+QRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSE+YGSRPSMTID
Sbjct: 181 SSSRQTIADSVFVQRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSEEYGSRPSMTID 240

Query: 241 VCSERQVLLVLELLSDFSDDLVPVVIPAKGGGTQAVRAILTSSKEDKILLEKELQNLEEE 300
           VCSERQVLLVLELLS+FSDDLVPVVIP KGGGTQA+RAI TSSKEDKILLEKELQNLEEE
Sbjct: 241 VCSERQVLLVLELLSEFSDDLVPVVIPTKGGGTQAIRAIWTSSKEDKILLEKELQNLEEE 300

Query: 301 ENKRFRGFREVIDMISASQKPIVSYGSLNDFTFIHSKFLAPLPSRIDEFSDSLHSVFPQV 360
           ENK+FRGFREV+D+ISASQKPIVSY SLNDF F+HSKFLAPLP+ IDEF+ SLH VFP+V
Sbjct: 301 ENKKFRGFREVVDIISASQKPIVSYNSLNDFAFVHSKFLAPLPTGIDEFASSLHLVFPRV 360

Query: 361 LDVQHLMRNISGLNKPTSISSALSYLKNHYFAPVDLDIPVEGTGNERKFHGHNAIKLCHL 420
           LDV+HL+  I GL+KPTSI+SALSYLKNHYFAP+DLDIPVE TGN+RKFHGHNAI +CHL
Sbjct: 361 LDVKHLISKIGGLSKPTSIASALSYLKNHYFAPIDLDIPVEATGNDRKFHGHNAILVCHL 420

Query: 421 FTKVCSVLKIDLSSVQFNEKRLASNLEGCANVFASFPPCHQEPEDEGEDVKISTRNVRKV 480
           F K CSVLKIDL  VQ N   LAS L+GCANVF SF P H + ED  ED+KIST+NVRK+
Sbjct: 421 FAKACSVLKIDLGGVQSN-NCLASKLDGCANVFGSFSPDHHKSED--EDIKISTKNVRKI 480

Query: 481 SCGQLVFLWGFRDGMTAGLLKAALQGSHEVLCEEFDVRFVGKKCAILVFWQPGLSETFLD 540
           SC  LVFLWGFRDGMTA  +K AL+GSHEV CEEFDVRFV KKCAI+VFWQPGLSE FLD
Sbjct: 481 SCRHLVFLWGFRDGMTARSMKTALEGSHEVFCEEFDVRFVDKKCAIVVFWQPGLSEAFLD 540

Query: 541 AIHSDDILGSLKDMVSEGLRAASYETYKRVCRLGHWEADLAESLERATS-------EADC 600
           AI+SD I+G LKDMVSEGL+A  YETYKRVCRLG WEADLAESLERATS       EAD 
Sbjct: 541 AINSDGIVGCLKDMVSEGLKATGYETYKRVCRLGLWEADLAESLERATSEHHHSSFEADP 600

Query: 601 ETAQFDIYYSNNSLINLNDL 613
           ET + DIYYSN+S+INL DL
Sbjct: 601 ETERLDIYYSNDSIINLADL 617

[Close]

BLAST of MS020722 vs. TAIR 10
Match: AT3G25430.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 633.3 bits (1632), Expect = 2.1e-181
Identity = 328/604 (54.30%), Postives = 439/604 (72.68%), Query Frame = 0


Query: 20  QWSVRQVRKSDFHGCLGDLDSHISASDFIALSLQKTGSSSFPWHRLQPFDTSHTAYCKAK 79
           +WSV+QV+KS+FH  L ++ + I +SDFIALSLQ TGS +  WHR+   DT  T+Y KAK
Sbjct: 23  RWSVKQVKKSNFHVTLDEIRTSIDSSDFIALSLQNTGSYAAAWHRVSAIDTPQTSYLKAK 82

Query: 80  YAAEKFQILQFALCPFSVRESKLIAHPYNFHLFPRDELNIGMPSYSFSCQVSHLTSMARE 139
           YAAE++QILQFALCPFS++ SKL  HPYNFHLFPRDEL  GMPSYSFSCQ S LT+MARE
Sbjct: 83  YAAERYQILQFALCPFSLQGSKLTVHPYNFHLFPRDELKCGMPSYSFSCQASRLTAMARE 142

Query: 140 GFDFDACIYDGISYLSRAQESIAKVRMGCPTPTPSTYVLKSSSRQSIADSVFIQRVKSRV 199
           GFDF+ CIY+GISYLSRAQES +K     P    S  V  SSS  ++AD+VF+ R++SRV
Sbjct: 143 GFDFNICIYEGISYLSRAQESASKFLSENPILADSVTV--SSSPATVADTVFVGRIRSRV 202

Query: 200 KNWKDAC-NSSTKT-NDALLSSLKKLIIGSEQYGSRPSMTIDVCSERQVLLVLELLSDFS 259
           KNW+ +C +S +KT +D L+SSL++L++GSEQYGSR  +TIDVCSERQV L+LE+L++FS
Sbjct: 203 KNWRQSCIDSGSKTGDDDLVSSLRRLVLGSEQYGSRLCLTIDVCSERQVQLILEMLTEFS 262

Query: 260 DDLVPVVIPAKGGGTQAVRAILTSSKEDKILLEKELQNLEEEENKRFRGFREVIDMISAS 319
           DD+VP+++ +K  GTQAVR +  SSKEDK L ++EL++LE+EEN+R RGFREV+D IS+S
Sbjct: 263 DDVVPLLVASKSRGTQAVRTVFMSSKEDKDLFKRELKDLEKEENRRVRGFREVVDFISSS 322

Query: 320 QKPIVSYGSLNDFTFIHSKFLAPLPSRIDEFSDSLHSVFPQVLDVQHLMRNISGLNKPTS 379
           QKP+VS   L+DFT IH+KFL PLPS +D+FS SL S FP V+D+   M+ IS L+  ++
Sbjct: 323 QKPVVSQNYLSDFTSIHAKFLGPLPSNVDDFSSSLSSAFPNVVDLSQFMKEISPLSNISN 382

Query: 380 ISSALSYLKNHYFAPVDLDIPVEG----TGNERKFHGHNAIKLCHLFTKVCSVLKIDLSS 439
           + +A+S L N +FAPVD+++  +G         + HG NA+ +  LF K+C++ K DLS+
Sbjct: 383 LPAAMSSL-NRFFAPVDVEVANQGCPVKLDEGHQSHGQNAVMISQLFAKLCTIQKSDLST 442

Query: 440 VQFNEKRLASNLEGCANVFASFPPCHQEPEDEGEDVKISTRNVRKVSCGQLVFLWGFRDG 499
           +Q NE   A   +  AN   S   C +   D  E+VK+ ++N R+VS   LVF+WG    
Sbjct: 443 IQSNEDFQALASDEHAN---SVTSCSKNAGD--ENVKVWSKNSRRVSSENLVFIWGLGKK 502

Query: 500 MTAGLLKAALQGSHEVLCEEFDVRFVGKKCAILVFWQPGLSETFLDAIHSDDIL-GSLKD 559
           MTA  LK  LQ SH V   EFDV+++ +  AILVFW+ G SETFL A+++++ L GSL++
Sbjct: 503 MTAAKLKNVLQKSHPVFAREFDVKYIDRSSAILVFWESGPSETFLSAVNNEEQLDGSLRE 562

Query: 560 MVSEGLRAASYETYKRVCRLGHWEADLAESLERA----TSEADCETAQFDIYYSNNSLIN 613
           MV+EGLR A YETYKR CRLG WEADLAESL++A     ++ D +T   +I +SN   IN
Sbjct: 563 MVAEGLRGAGYETYKRACRLGFWEADLAESLDKALESSDTDPDSDTKPSEIDWSNELAIN 618

[Close]

BLAST of MS020722 vs. TAIR 10
Match: AT1G55870.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 202.6 bits (514), Expect = 9.1e-52
Identity = 172/646 (26.63%), Postives = 293/646 (45.36%), Query Frame = 0


Query: 16  STSNQWSVRQVRKSDFHGCLGDLDSHISASDFIALSLQKTGSSSFPWHRLQPFDTSHTAY 75
           S +  + ++ V +S+F   L DL S + A+DF+A+ L+ TG +S PW     FD     Y
Sbjct: 31  SATAAFPLKHVTRSNFETTLNDLRSLVKAADFVAIDLEMTGVTSAPWRDSLEFDRYDVRY 90

Query: 76  CKAKYAAEKFQILQFALCPF--SVRESKLIAHPYNFHLFPRDELNIGMPSYSFSCQVSHL 135
            K K +AEKF ++QF +CPF    R    +++P+NF +FPR EL    P++ F CQ + +
Sbjct: 91  LKVKDSAEKFAVVQFGVCPFRWDSRTQSFVSYPHNFFVFPRQELTFDPPAHEFLCQTTSM 150

Query: 136 TSMAREGFDFDACIYDGISYLSRAQESIAKVRMGC---PTPTPSTYVLKSSSRQSIADSV 195
             +A+  FDF+ CI++GISYLSR +E  A  R+          S+   +      +AD +
Sbjct: 151 DFLAKYQFDFNTCIHEGISYLSRREEEEASKRLKMLHGEDGIDSSGETEELKLVRLADVL 210

Query: 196 FIQRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSEQ------YGSRPSMTIDVCSER 255
           F  R++  +  W+         +    S   ++  GS Q      +  RP++++   +  
Sbjct: 211 FAARMEKLLNEWRSGLLHGGNAS----SEFPRISNGSNQSMETVFHHMRPALSLKGFTSH 270

Query: 256 QVLLVLELLSDFSDDLVPVVIPAKGGGTQAVRAILTSSKEDKILLEKELQN----LEEEE 315
           Q+ ++  +L     DLV +    K   ++ +  + T S  DK  L KE ++    L E +
Sbjct: 271 QLRVLNSVLRKHFGDLVYIHSNDKSSSSRDI-VVYTDSDSDKENLMKEAKDERKRLAERK 330

Query: 316 NKRFRGFREVIDMISASQKPIVSYGSLNDFTFIHSKFLAPLPSRIDEFSDSLHSVFPQVL 375
            +   GFR+VID++++ +K IV +    D   ++SKF+ PLPS  ++F  S++S FP ++
Sbjct: 331 IQSAIGFRQVIDLLASEKKLIVGHNCFLDIAHVYSKFVGPLPSTAEKFVASINSHFPYIV 390

Query: 376 DVQHLMRNISGL------NKPTSISSALSYL-----------KNHYFAPVDLDIPVEG-- 435
           D + L+ N++ +         TS+SSA S L            +     V++D+ ++   
Sbjct: 391 DTKILL-NVNPMLHQRMKKSSTSLSSAFSSLCPQIEFSSRSSDSFLQQRVNIDVEIDNVR 450

Query: 436 ----TGNERKFHGHNAIKLCHLFTKVCSVLKIDLSS-VQFNEKRLASNLEGCAN-VFASF 495
                   +   G++A     +F + C+ L  D     Q ++      LE   N ++ S+
Sbjct: 451 CSNWNAGGKHEAGYDAFMTGCIFAQACNHLGFDFKQHSQLDDFAQNEKLEKYINRLYLSW 510

Query: 496 PPCHQEPEDEGEDVKISTRN-------VRKVSCGQLVFLWGFRDGMTAGLLKAALQGSHE 555
                     G+ + + T +       V K     +V +W F   + A       +G  E
Sbjct: 511 --------TRGDIIDLRTGHSNADNWRVSKFKYENIVLIWNFPRKLKA-------RGIKE 570

Query: 556 VLCEEF------DVRFVGKKCAILVFWQPGLSETFL---DAIHSDD----ILGSLKDMVS 595
            +C+ F       V  V      ++F    L   FL     + S D    +L  L  ++ 
Sbjct: 571 CICKAFGSASVTSVYHVDDSAVFVLFKNSELVWDFLALKRQLESSDGPVSVLHPLSKILE 630

[Close]

BLAST of MS020722 vs. TAIR 10
Match: AT1G55870.2 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 111.7 bits (278), Expect = 2.1e-24
Identity = 127/524 (24.24%), Postives = 223/524 (42.56%), Query Frame = 0


Query: 136 MAREGFDFDACIYDGISYLSRAQESIAKVRMGC---PTPTPSTYVLKSSSRQSIADSVFI 195
           +A+  FDF+ CI++GISYLSR +E  A  R+          S+   +      +AD +F 
Sbjct: 4   LAKYQFDFNTCIHEGISYLSRREEEEASKRLKMLHGEDGIDSSGETEELKLVRLADVLFA 63

Query: 196 QRVKSRVKNWKDACNSSTKTNDALLSSLKKLIIGSEQ------YGSRPSMTIDVCSERQV 255
            R++  +  W+         +    S   ++  GS Q      +  RP++++   +  Q+
Sbjct: 64  ARMEKLLNEWRSGLLHGGNAS----SEFPRISNGSNQSMETVFHHMRPALSLKGFTSHQL 123

Query: 256 LLVLELLSDFSDDLVPVVIPAKGGGTQAVRAILTSSKEDKILLEKELQN----LEEEENK 315
            ++  +L     DLV +    K   ++ +  + T S  DK  L KE ++    L E + +
Sbjct: 124 RVLNSVLRKHFGDLVYIHSNDKSSSSRDI-VVYTDSDSDKENLMKEAKDERKRLAERKIQ 183

Query: 316 RFRGFREVIDMISASQKPIVSYGSLNDFTFIHSKFLAPLPSRIDEFSDSLHSVFPQVLDV 375
              GFR+VID++++ +K IV +    D   ++SKF+ PLPS  ++F  S++S FP ++D 
Sbjct: 184 SAIGFRQVIDLLASEKKLIVGHNCFLDIAHVYSKFVGPLPSTAEKFVASINSHFPYIVDT 243

Query: 376 QHLMRNISGL------NKPTSISSALSYL-----------KNHYFAPVDLDIPVEG---- 435
           + L+ N++ +         TS+SSA S L            +     V++D+ ++     
Sbjct: 244 KILL-NVNPMLHQRMKKSSTSLSSAFSSLCPQIEFSSRSSDSFLQQRVNIDVEIDNVRCS 303

Query: 436 --TGNERKFHGHNAIKLCHLFTKVCSVLKIDLSS-VQFNEKRLASNLEGCAN-VFASFPP 495
                 +   G++A     +F + C+ L  D     Q ++      LE   N ++ S+  
Sbjct: 304 NWNAGGKHEAGYDAFMTGCIFAQACNHLGFDFKQHSQLDDFAQNEKLEKYINRLYLSW-- 363

Query: 496 CHQEPEDEGEDVKISTRN-------VRKVSCGQLVFLWGFRDGMTAGLLKAALQGSHEVL 555
                   G+ + + T +       V K     +V +W F   + A       +G  E +
Sbjct: 364 ------TRGDIIDLRTGHSNADNWRVSKFKYENIVLIWNFPRKLKA-------RGIKECI 423

Query: 556 CEEF------DVRFVGKKCAILVFWQPGLSETFL---DAIHSDD----ILGSLKDMVSEG 595
           C+ F       V  V      ++F    L   FL     + S D    +L  L  ++  G
Sbjct: 424 CKAFGSASVTSVYHVDDSAVFVLFKNSELVWDFLALKRQLESSDGPVSVLHPLSKILEGG 483

The following BLAST results are available for this feature:

BLAST of MS020722 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143589.1	0.0e+00	98.04	poly(A)-specific ribonuclease PARN-like isoform X2 [Momordica charantia]	[more]
XP_022143588.1	0.0e+00	92.88	poly(A)-specific ribonuclease PARN-like isoform X1 [Momordica charantia]	[more]
XP_022143590.1	9.4e-309	84.67	poly(A)-specific ribonuclease PARN-like isoform X3 [Momordica charantia]	[more]
XP_022953758.1	1.5e-290	81.94	poly(A)-specific ribonuclease PARN-like isoform X1 [Cucurbita moschata]	[more]
XP_023547854.1	1.5e-290	81.61	poly(A)-specific ribonuclease PARN-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of MS020722 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8W4C3	2.9e-180	54.30	Poly(A)-specific ribonuclease PARN-like OS=Arabidopsis thaliana OX=3702 GN=At3g2...	[more]
Q9LG26	1.3e-50	26.63	Poly(A)-specific ribonuclease PARN OS=Arabidopsis thaliana OX=3702 GN=PARN PE=1 ...	[more]
Q90ZA1	2.5e-22	25.83	Poly(A)-specific ribonuclease PARN OS=Xenopus laevis OX=8355 GN=parn PE=1 SV=1	[more]
B2RXZ1	6.4e-18	25.71	Poly(A)-specific ribonuclease PNLDC1 OS=Mus musculus OX=10090 GN=Pnldc1 PE=1 SV=...	[more]
P69341	1.4e-17	25.46	Poly(A)-specific ribonuclease PARN OS=Bos taurus OX=9913 GN=PARN PE=1 SV=2	[more]

BLAST of MS020722 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CPR7	0.0e+00	98.04	poly(A)-specific ribonuclease PARN-like isoform X2 OS=Momordica charantia OX=367...	[more]
A0A6J1CR29	0.0e+00	92.88	poly(A)-specific ribonuclease PARN-like isoform X1 OS=Momordica charantia OX=367...	[more]
A0A6J1CP73	4.6e-309	84.67	poly(A)-specific ribonuclease PARN-like isoform X3 OS=Momordica charantia OX=367...	[more]
A0A6J1GP80	7.3e-291	81.94	poly(A)-specific ribonuclease PARN-like isoform X1 OS=Cucurbita moschata OX=3662...	[more]
A0A6J1JW45	1.4e-289	81.77	poly(A)-specific ribonuclease PARN-like isoform X1 OS=Cucurbita maxima OX=3661 G...	[more]

BLAST of MS020722 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G25430.1	2.1e-181	54.30	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G55870.1	9.1e-52	26.63	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G55870.2	2.1e-24	24.24	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 279..302
None	No IPR available	PANTHER	PTHR15092:SF42	POLY(A)-SPECIFIC RIBONUCLEASE PARN-LIKE	coord: 13..595
None	No IPR available	PANTHER	PTHR15092	POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1	coord: 13..595
IPR006941	Ribonuclease CAF1	PFAM	PF04857	CAF1	coord: 26..397 e-value: 1.2E-57 score: 195.6
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 25..226 e-value: 2.0E-27 score: 98.1 coord: 276..456 e-value: 4.0E-25 score: 90.5
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 23..432

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS020722.1	MS020722.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding