MS020712 (gene) Bitter gourd (TR) v1

Overview


Name	MS020712
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Phosphate transporter 1
Location	scaffold178: 35522 .. 35602 (-)
RNA-Seq Expression	MS020712
Synteny	MS020712

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAACCCCCGACACCGTGGTTCGTAGCCACGTGCTCTAATCCTCTGAGCTACAGGCCCCACCCCGTCTCCACTGGATCTGTT

mRNA sequence

GAACCCCCGACACCGTGGTTCGTAGCCACGTGCTCTAATCCTCTGAGCTACAGGCCCCACCCCGTCTCCACTGGATCTGTT

Coding sequence (CDS)

GAACCCCCGACACCGTGGTTCGTAGCCACGTGCTCTAATCCTCTGAGCTACAGGCCCCACCCCGTCTCCACTGGATCTGTT

Protein sequence

EPPTPWFVATCSNPLSYRPHPVSTGSV

Homology

[Close]

BLAST of MS020712 vs. NCBI nr
Match: VVW86463.1 (unnamed protein product, partial [Nymphaea colorata])

HSP 1 Score: 63.9 bits (154), Expect = 2.4e-07
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 1  EPPTPWFVATCSNPLSYRPHPVSTGSV 28
          EPPTPWFVATCSNPLSYRPHPVSTGSV
Sbjct: 28 EPPTPWFVATCSNPLSYRPHPVSTGSV 54

[Close]

BLAST of MS020712 vs. NCBI nr
Match: VVW88621.1 (unnamed protein product, partial [Nymphaea colorata])

HSP 1 Score: 63.9 bits (154), Expect = 2.4e-07
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 1  EPPTPWFVATCSNPLSYRPHPVSTGSV 28
          EPPTPWFVATCSNPLSYRPHPVSTGSV
Sbjct: 35 EPPTPWFVATCSNPLSYRPHPVSTGSV 61

[Close]

BLAST of MS020712 vs. NCBI nr
Match: VVW91302.1 (unnamed protein product, partial [Nymphaea colorata])

HSP 1 Score: 63.9 bits (154), Expect = 2.4e-07
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 1  EPPTPWFVATCSNPLSYRPHPVSTGSV 28
          EPPTPWFVATCSNPLSYRPHPVSTGSV
Sbjct: 21 EPPTPWFVATCSNPLSYRPHPVSTGSV 47

[Close]

BLAST of MS020712 vs. NCBI nr
Match: GER30100.1 (phosphate transporter 1 [Striga asiatica])

HSP 1 Score: 63.9 bits (154), Expect = 2.4e-07
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 1  EPPTPWFVATCSNPLSYRPHPVSTGSV 28
          EPPTPWFVATCSNPLSYRPHPVSTGSV
Sbjct: 23 EPPTPWFVATCSNPLSYRPHPVSTGSV 49

[Close]

BLAST of MS020712 vs. NCBI nr
Match: VVW89192.1 (unnamed protein product, partial [Nymphaea colorata])

HSP 1 Score: 63.9 bits (154), Expect = 2.4e-07
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 1  EPPTPWFVATCSNPLSYRPHPVSTGSV 28
          EPPTPWFVATCSNPLSYRPHPVSTGSV
Sbjct: 35 EPPTPWFVATCSNPLSYRPHPVSTGSV 61

[Close]

BLAST of MS020712 vs. ExPASy TrEMBL
Match: A0A5K1HQU0 (Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS29277 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.2e-07
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 1  EPPTPWFVATCSNPLSYRPHPVSTGSV 28
          EPPTPWFVATCSNPLSYRPHPVSTGSV
Sbjct: 28 EPPTPWFVATCSNPLSYRPHPVSTGSV 54

[Close]

BLAST of MS020712 vs. ExPASy TrEMBL
Match: A0A5K1I026 (Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS29275 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.2e-07
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 1  EPPTPWFVATCSNPLSYRPHPVSTGSV 28
          EPPTPWFVATCSNPLSYRPHPVSTGSV
Sbjct: 21 EPPTPWFVATCSNPLSYRPHPVSTGSV 47

[Close]

BLAST of MS020712 vs. ExPASy TrEMBL
Match: A0A5A7PBN3 (Phosphate transporter 1 OS=Striga asiatica OX=4170 GN=STAS_06022 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.2e-07
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 1  EPPTPWFVATCSNPLSYRPHPVSTGSV 28
          EPPTPWFVATCSNPLSYRPHPVSTGSV
Sbjct: 23 EPPTPWFVATCSNPLSYRPHPVSTGSV 49

[Close]

BLAST of MS020712 vs. ExPASy TrEMBL
Match: A0A5K1HEZ2 (Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS29510 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.2e-07
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 1  EPPTPWFVATCSNPLSYRPHPVSTGSV 28
          EPPTPWFVATCSNPLSYRPHPVSTGSV
Sbjct: 28 EPPTPWFVATCSNPLSYRPHPVSTGSV 54

[Close]

BLAST of MS020712 vs. ExPASy TrEMBL
Match: A0A5K1HNP9 (Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS30308 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.2e-07
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 1  EPPTPWFVATCSNPLSYRPHPVSTGSV 28
          EPPTPWFVATCSNPLSYRPHPVSTGSV
Sbjct: 35 EPPTPWFVATCSNPLSYRPHPVSTGSV 61

The following BLAST results are available for this feature:

BLAST of MS020712 vs. NCBI nr


Match Name	E-value	Identity	Description
VVW86463.1	2.4e-07	100.00	unnamed protein product, partial [Nymphaea colorata]	[more]
VVW88621.1	2.4e-07	100.00	unnamed protein product, partial [Nymphaea colorata]	[more]
VVW91302.1	2.4e-07	100.00	unnamed protein product, partial [Nymphaea colorata]	[more]
GER30100.1	2.4e-07	100.00	phosphate transporter 1 [Striga asiatica]	[more]
VVW89192.1	2.4e-07	100.00	unnamed protein product, partial [Nymphaea colorata]	[more]

BLAST of MS020712 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS020712 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5K1HQU0	1.2e-07	100.00	Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS29...	[more]
A0A5K1I026	1.2e-07	100.00	Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS29...	[more]
A0A5A7PBN3	1.2e-07	100.00	Phosphate transporter 1 OS=Striga asiatica OX=4170 GN=STAS_06022 PE=4 SV=1	[more]
A0A5K1HEZ2	1.2e-07	100.00	Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS29...	[more]
A0A5K1HNP9	1.2e-07	100.00	Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS30...	[more]

BLAST of MS020712 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS020712.1	MS020712.1	mRNA