MS020652 (gene) Bitter gourd (TR) v1

Overview


Name	MS020652
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	tRNA-intron lyase
Location	scaffold375: 1910070 .. 1910789 (+)
RNA-Seq Expression	MS020652
Synteny	MS020652

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGCCAAGATGGAAAGGGAAGGGTTCAGAAGCCAAAGCTCTAGCAGATCCCATGTCGAAGATTGTACTTCAGCTTCAATCTTCTCTAACACAATCGGACGCTCAGGGACTATTGTCCGGATGTAGTGTACTTTATCAAGCAGATGAAGAACAAGCCGATCTTTTCAATCGCGCTTGTTTCGGTCGACCCATTGTTACAGCCGATAAGGATAAGCAATGGTTTCAATTGGGCGTGGAGGAGGCGTTTTACTTGTCCTGTCATTTGAAATGCCTCAAAATTGTCGATGGACAAGATTGTGAAAAGAATGCTGAACAGCTGTGGGAGTATATGAAGTCCCAAAAGGCTACGTTCCCTGAGTTTTACAAGGCTTATCAACATCTCCGGATGAAGAATTGGGTTGTCAGACCTGGATCTCAATACGGGGTTGATTTTGTGGCTTATCGTCACCATCCGGCTCTCGTCCACTCTGAATTTGCTGTTCTTGTGTTGTCCGAAGGAGGAGGAGACAGTAACGAAAATGGGCGATTGAGAGTTTGGTCTGATTTTCTCTGCACAATTCGGCTCTGTGGAAGCGTTGCAAAAACGCTGCTAGTTCTTAGCGTCAATAACAATGGAAGCAGTTCTGTTTCTCCTTCATTTTTGGACAGCTACTCCATTGAAGAACGTACGGTTACAAGATGGAGTCCAGAACAGTGCCGTGAAAATCCTGCAAAAGTG

mRNA sequence

ATGGGGCCAAGATGGAAAGGGAAGGGTTCAGAAGCCAAAGCTCTAGCAGATCCCATGTCGAAGATTGTACTTCAGCTTCAATCTTCTCTAACACAATCGGACGCTCAGGGACTATTGTCCGGATGTAGTGTACTTTATCAAGCAGATGAAGAACAAGCCGATCTTTTCAATCGCGCTTGTTTCGGTCGACCCATTGTTACAGCCGATAAGGATAAGCAATGGTTTCAATTGGGCGTGGAGGAGGCGTTTTACTTGTCCTGTCATTTGAAATGCCTCAAAATTGTCGATGGACAAGATTGTGAAAAGAATGCTGAACAGCTGTGGGAGTATATGAAGTCCCAAAAGGCTACGTTCCCTGAGTTTTACAAGGCTTATCAACATCTCCGGATGAAGAATTGGGTTGTCAGACCTGGATCTCAATACGGGGTTGATTTTGTGGCTTATCGTCACCATCCGGCTCTCGTCCACTCTGAATTTGCTGTTCTTGTGTTGTCCGAAGGAGGAGGAGACAGTAACGAAAATGGGCGATTGAGAGTTTGGTCTGATTTTCTCTGCACAATTCGGCTCTGTGGAAGCGTTGCAAAAACGCTGCTAGTTCTTAGCGTCAATAACAATGGAAGCAGTTCTGTTTCTCCTTCATTTTTGGACAGCTACTCCATTGAAGAACGTACGGTTACAAGATGGAGTCCAGAACAGTGCCGTGAAAATCCTGCAAAAGTG

Coding sequence (CDS)

ATGGGGCCAAGATGGAAAGGGAAGGGTTCAGAAGCCAAAGCTCTAGCAGATCCCATGTCGAAGATTGTACTTCAGCTTCAATCTTCTCTAACACAATCGGACGCTCAGGGACTATTGTCCGGATGTAGTGTACTTTATCAAGCAGATGAAGAACAAGCCGATCTTTTCAATCGCGCTTGTTTCGGTCGACCCATTGTTACAGCCGATAAGGATAAGCAATGGTTTCAATTGGGCGTGGAGGAGGCGTTTTACTTGTCCTGTCATTTGAAATGCCTCAAAATTGTCGATGGACAAGATTGTGAAAAGAATGCTGAACAGCTGTGGGAGTATATGAAGTCCCAAAAGGCTACGTTCCCTGAGTTTTACAAGGCTTATCAACATCTCCGGATGAAGAATTGGGTTGTCAGACCTGGATCTCAATACGGGGTTGATTTTGTGGCTTATCGTCACCATCCGGCTCTCGTCCACTCTGAATTTGCTGTTCTTGTGTTGTCCGAAGGAGGAGGAGACAGTAACGAAAATGGGCGATTGAGAGTTTGGTCTGATTTTCTCTGCACAATTCGGCTCTGTGGAAGCGTTGCAAAAACGCTGCTAGTTCTTAGCGTCAATAACAATGGAAGCAGTTCTGTTTCTCCTTCATTTTTGGACAGCTACTCCATTGAAGAACGTACGGTTACAAGATGGAGTCCAGAACAGTGCCGTGAAAATCCTGCAAAAGTG

Protein sequence

MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQADLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDCEKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVWSDFLCTIRLCGSVAKTLLVLSVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPAKV

Homology

[Close]

BLAST of MS020652 vs. NCBI nr
Match: XP_022146301.1 (tRNA-splicing endonuclease subunit Sen2-1 [Momordica charantia])

HSP 1 Score: 495.7 bits (1275), Expect = 2.2e-136
Identity = 239/240 (99.58%), Postives = 239/240 (99.58%), Query Frame = 0


Query: 1   MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQADLFNRAC 60
           MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQ DLFNRAC
Sbjct: 1   MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQTDLFNRAC 60

Query: 61  FGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDCEKNAEQLWEYMKSQKATFPE 120
           FGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDCEKNAEQLWEYMKSQKATFPE
Sbjct: 61  FGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDCEKNAEQLWEYMKSQKATFPE 120

Query: 121 FYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVW 180
           FYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVW
Sbjct: 121 FYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVW 180

Query: 181 SDFLCTIRLCGSVAKTLLVLSVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPAKV 240
           SDFLCTIRLCGSVAKTLLVLSVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPAKV
Sbjct: 181 SDFLCTIRLCGSVAKTLLVLSVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPAKV 240

[Close]

BLAST of MS020652 vs. NCBI nr
Match: XP_023532286.1 (tRNA-splicing endonuclease subunit Sen2-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 446.8 bits (1148), Expect = 1.2e-121
Identity = 217/238 (91.18%), Postives = 227/238 (95.38%), Query Frame = 0


Query: 1   MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQADLFNRAC 60
           MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLS CSVLYQADEEQA+L NRAC
Sbjct: 1   MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC 60

Query: 61  FGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDCEKNAEQLWEYMKSQKATFPE 120
           FGRPIV+A+KDKQWFQ G+EEAFYLS HL CLKIVDGQDCEKN ++LW YMKSQKATFPE
Sbjct: 61  FGRPIVSAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFDELWHYMKSQKATFPE 120

Query: 121 FYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVW 180
           FYKAYQ+LRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEG G SNENGRLRVW
Sbjct: 121 FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEG-SNENGRLRVW 180

Query: 181 SDFLCTIRLCGSVAKTLLVLSVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPA 239
           SDFLCTIRLCGSVAKTLLVL+VN+NG+ SVSPS LDSYSIEERTVTRWSPEQCRENPA
Sbjct: 181 SDFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVTRWSPEQCRENPA 237

[Close]

BLAST of MS020652 vs. NCBI nr
Match: XP_022947593.1 (tRNA-splicing endonuclease subunit Sen2-1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 441.8 bits (1135), Expect = 3.7e-120
Identity = 215/238 (90.34%), Postives = 227/238 (95.38%), Query Frame = 0


Query: 1   MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQADLFNRAC 60
           MGPRWKGKGSEAKALADP+SKIVLQLQSSLTQSDAQGLLS CSVLYQADEEQA+L NRAC
Sbjct: 1   MGPRWKGKGSEAKALADPVSKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC 60

Query: 61  FGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDCEKNAEQLWEYMKSQKATFPE 120
           FGRPIV+A+KDKQWFQ G+EEAFYLS +L CLKIVDGQDCEKN ++LW YMKSQKATFPE
Sbjct: 61  FGRPIVSAEKDKQWFQFGMEEAFYLSYYLNCLKIVDGQDCEKNFDELWLYMKSQKATFPE 120

Query: 121 FYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVW 180
           FYKAYQ+LRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEG G SNENGRLRVW
Sbjct: 121 FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEG-SNENGRLRVW 180

Query: 181 SDFLCTIRLCGSVAKTLLVLSVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPA 239
           SDFLCTIRLCGSVAKTLLVL+VN+NG+ SVSPS LDSYSIEERTVTRWSPEQCRENPA
Sbjct: 181 SDFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVTRWSPEQCRENPA 237

[Close]

BLAST of MS020652 vs. NCBI nr
Match: XP_022947592.1 (tRNA-splicing endonuclease subunit Sen2-1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 441.8 bits (1135), Expect = 3.7e-120
Identity = 215/238 (90.34%), Postives = 227/238 (95.38%), Query Frame = 0


Query: 1   MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQADLFNRAC 60
           MGPRWKGKGSEAKALADP+SKIVLQLQSSLTQSDAQGLLS CSVLYQADEEQA+L NRAC
Sbjct: 1   MGPRWKGKGSEAKALADPVSKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC 60

Query: 61  FGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDCEKNAEQLWEYMKSQKATFPE 120
           FGRPIV+A+KDKQWFQ G+EEAFYLS +L CLKIVDGQDCEKN ++LW YMKSQKATFPE
Sbjct: 61  FGRPIVSAEKDKQWFQFGMEEAFYLSYYLNCLKIVDGQDCEKNFDELWLYMKSQKATFPE 120

Query: 121 FYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVW 180
           FYKAYQ+LRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEG G SNENGRLRVW
Sbjct: 121 FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEG-SNENGRLRVW 180

Query: 181 SDFLCTIRLCGSVAKTLLVLSVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPA 239
           SDFLCTIRLCGSVAKTLLVL+VN+NG+ SVSPS LDSYSIEERTVTRWSPEQCRENPA
Sbjct: 181 SDFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVTRWSPEQCRENPA 237

[Close]

BLAST of MS020652 vs. NCBI nr
Match: KAG6605517.1 (tRNA-splicing endonuclease subunit Sen2-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 439.5 bits (1129), Expect = 1.9e-119
Identity = 215/238 (90.34%), Postives = 225/238 (94.54%), Query Frame = 0


Query: 1   MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQADLFNRAC 60
           MG RWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLS CSVLYQADEEQA+L NRAC
Sbjct: 1   MGLRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC 60

Query: 61  FGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDCEKNAEQLWEYMKSQKATFPE 120
           FGRPIV+A+KDKQWFQ G+EEAFYLS HL CLKIVDGQDCEKN ++LW YMKSQKATFPE
Sbjct: 61  FGRPIVSAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFDELWLYMKSQKATFPE 120

Query: 121 FYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVW 180
           FYKAYQ+LRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEG G  NENGRLRVW
Sbjct: 121 FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEG-INENGRLRVW 180

Query: 181 SDFLCTIRLCGSVAKTLLVLSVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPA 239
           SDFLCTIRLCGSVAKTLLVL+VN+NG+ SVSPS LDSYSIEERTVTRWSPEQCRENPA
Sbjct: 181 SDFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVTRWSPEQCRENPA 237

[Close]

BLAST of MS020652 vs. ExPASy Swiss-Prot
Match: Q9M1E8 (tRNA-splicing endonuclease subunit Sen2-1 OS=Arabidopsis thaliana OX=3702 GN=SEN1 PE=2 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 4.8e-70
Identity = 137/242 (56.61%), Postives = 170/242 (70.25%), Query Frame = 0


Query: 1   MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQADLFNRAC 60
           M PRWK KG+EAKALA+P+SK V +L+SSLTQ++A G LS C+VL   + E+A+L +R C
Sbjct: 1   MAPRWKWKGAEAKALAEPVSKTVSELRSSLTQTEALGFLSSCNVLLSVESEEAELLDRCC 60

Query: 61  FGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKI-VDGQDCEKNAEQLWEYMKSQKATFP 120
           FGR +V A+KDK+W QL  EEAF+L   LKC+KI + G+  E N   LW  M S K  F 
Sbjct: 61  FGRLVVGAEKDKRWIQLSFEEAFFLFYKLKCIKICLHGRSLE-NEVDLWRSMSSFKQDFA 120

Query: 121 EFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRV 180
             YKAY HLR KNW+VR G QYGVDFV YRHHP+LVHSE+AVLV S GG D     RL+V
Sbjct: 121 ILYKAYSHLRSKNWIVRSGLQYGVDFVVYRHHPSLVHSEYAVLVQSIGGND-----RLKV 180

Query: 181 WSDFLCTIRLCGSVAKTLLVLSVNN--NGSSSVSPSFLDSYSIEERTVTRWSPEQCRENP 240
           WSD  C++RL GSVAK+LLVL VN   N      P  L+ Y++EE+T+ RWSPE  RE+ 
Sbjct: 181 WSDIHCSVRLTGSVAKSLLVLYVNRKVNTEKMNLPLCLEDYTVEEQTIRRWSPELSREDE 236

[Close]

BLAST of MS020652 vs. ExPASy Swiss-Prot
Match: Q9LSS3 (tRNA-splicing endonuclease subunit Sen2-2 OS=Arabidopsis thaliana OX=3702 GN=SEN2 PE=2 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 1.8e-69
Identity = 133/238 (55.88%), Postives = 172/238 (72.27%), Query Frame = 0


Query: 1   MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQADLFNRAC 60
           M PRWK KG+EAKALA+P+SK V +LQ SL ++++ G LS C+VL   + EQA+L +R C
Sbjct: 1   MAPRWKWKGAEAKALAEPISKSVSELQLSLAETESSGTLSSCNVLLAVEPEQAELLDRCC 60

Query: 61  FGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDCEKNAEQLWEYMKSQKATFPE 120
           FGR +++A+K K+W QL  EEAF+L  +LKC+KI     C +N    W YMKS++  FP 
Sbjct: 61  FGRLVLSAEKIKKWIQLSFEEAFFLHYNLKCIKISLQGRCLENEVDTWLYMKSKRPNFPM 120

Query: 121 FYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVW 180
           F+KAY HLR KNWV+R G QYGVDFVAYRHHP+LVHSE++VLV S   GDS+   RLRVW
Sbjct: 121 FFKAYSHLRSKNWVLRSGLQYGVDFVAYRHHPSLVHSEYSVLVQS---GDSD---RLRVW 180

Query: 181 SDFLCTIRLCGSVAKTLLVLSVNNN--GSSSVSPSFLDSYSIEERTVTRWSPEQCREN 237
           SD  C +RL GSVAKTLL L VN N  G        L+++++EE+T++RWSPE  RE+
Sbjct: 181 SDIHCAVRLSGSVAKTLLTLYVNGNFKGEDVNLLVCLENFTVEEQTISRWSPELSRED 232

[Close]

BLAST of MS020652 vs. ExPASy Swiss-Prot
Match: Q5Z6B1 (Probable tRNA-splicing endonuclease subunit Sen2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0530700 PE=2 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 5.3e-61
Identity = 126/242 (52.07%), Postives = 157/242 (64.88%), Query Frame = 0


Query: 2   GPRWK----GKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLS--GCSVLYQADEEQADL 61
           GPRWK    GK   + A A+PMS IV +L++S   S    +LS  G S +     EQA +
Sbjct: 5   GPRWKKGKDGKDFASLAAANPMSAIVSELKASFISSKPVAILSGPGGSAVLGVGPEQAVI 64

Query: 62  FNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDCEKNAE-QLWEYMKSQ 121
            NRA FG  I  A   K WFQL  EE FYL   L C++ VD  D ++ +E +LW+Y +S 
Sbjct: 65  LNRAAFGHAIENATAQKHWFQLSPEEVFYLCHALNCIR-VDSLDNKQMSEIELWDYFRSG 124

Query: 122 KATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNEN 181
             +FPE YKAY HLR+KNWVVR G QYG DFVAYRHHPALVHSEFAV+V+ EG    N  
Sbjct: 125 SESFPEMYKAYAHLRLKNWVVRSGLQYGADFVAYRHHPALVHSEFAVVVVPEGAEFGNRC 184

Query: 182 GRLRVWSDFLCTIRLCGSVAKTLLVLSVNNNGSSSV-SPSFLDSYSIEERTVTRWSPEQC 236
           GRL VWSD LC +R  GSVAKTLLVL+++++    + SP  L+   + ERT+TRW  +QC
Sbjct: 185 GRLEVWSDLLCALRASGSVAKTLLVLTISSSSKCELSSPDCLEQLVVHERTITRWILQQC 244

[Close]

BLAST of MS020652 vs. ExPASy Swiss-Prot
Match: Q97ZY3 (tRNA-splicing endonuclease OS=Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) OX=273057 GN=endA PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 6.2e-09
Identity = 40/134 (29.85%), Postives = 66/134 (49.25%), Query Frame = 0


Query: 36  QGLLSGCSVLYQADEEQADLFNRACFGRPI----VTADKD-KQWFQLGVEEAFYLSCHLK 95
           + LL G  VL  + +E   L++   +G+PI        KD  +  +L + E+ YL+    
Sbjct: 3   KALLVGSKVLVPSIDESRYLYSNGFYGKPIGISKPKGPKDIVRPLELSLIESVYLT-KKG 62

Query: 96  CLKIVDGQDCEKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRH 155
            + +VD        ++L+EY   +   F   YK Y+ LR K ++VR G +YG DF  Y  
Sbjct: 63  LINVVDKNGDLLEYKKLYEYSAMKINKFEILYKVYEDLREKGFIVRSGVKYGADFAVYTL 122

Query: 156 HPALVHSEFAVLVL 165
            P L H+ + V+ +
Sbjct: 123 GPGLEHAPYVVIAV 135

[Close]

BLAST of MS020652 vs. ExPASy Swiss-Prot
Match: C3MQX7 (tRNA-splicing endonuclease OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) OX=429572 GN=endA PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.4e-08
Identity = 38/134 (28.36%), Postives = 66/134 (49.25%), Query Frame = 0


Query: 36  QGLLSGCSVLYQADEEQADLFNRACFGRPI-VTADKDK----QWFQLGVEEAFYLSCHLK 95
           + LL G  VL    +E   +++   +G+ I ++  KD     +  +L + E+ YL+    
Sbjct: 3   KALLVGSKVLIPNVDESRYIYSNGFYGKAIGISKPKDPKDIIRPLELSLIESVYLA-KKG 62

Query: 96  CLKIVDGQDCEKNAEQLWEYMKSQKATFPEFYKAYQHLRMKNWVVRPGSQYGVDFVAYRH 155
            +K++D        E+L+EY       F   Y+ Y+ LR K ++VR G +YG DF  Y  
Sbjct: 63  LIKVIDKNGEVLEYEKLYEYSSKIINKFDIMYRVYEDLREKGFIVRSGVKYGADFAVYTL 122

Query: 156 HPALVHSEFAVLVL 165
            P L H+ + V+ +
Sbjct: 123 GPGLEHAPYVVIAV 135

[Close]

BLAST of MS020652 vs. ExPASy TrEMBL
Match: A0A6J1CYW3 (tRNA-intron lyase OS=Momordica charantia OX=3673 GN=LOC111015540 PE=3 SV=1)

HSP 1 Score: 495.7 bits (1275), Expect = 1.1e-136
Identity = 239/240 (99.58%), Postives = 239/240 (99.58%), Query Frame = 0


Query: 1   MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQADLFNRAC 60
           MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQ DLFNRAC
Sbjct: 1   MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQTDLFNRAC 60

Query: 61  FGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDCEKNAEQLWEYMKSQKATFPE 120
           FGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDCEKNAEQLWEYMKSQKATFPE
Sbjct: 61  FGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDCEKNAEQLWEYMKSQKATFPE 120

Query: 121 FYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVW 180
           FYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVW
Sbjct: 121 FYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVW 180

Query: 181 SDFLCTIRLCGSVAKTLLVLSVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPAKV 240
           SDFLCTIRLCGSVAKTLLVLSVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPAKV
Sbjct: 181 SDFLCTIRLCGSVAKTLLVLSVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPAKV 240

[Close]

BLAST of MS020652 vs. ExPASy TrEMBL
Match: A0A6J1G716 (tRNA-intron lyase OS=Cucurbita moschata OX=3662 GN=LOC111451414 PE=3 SV=1)

HSP 1 Score: 441.8 bits (1135), Expect = 1.8e-120
Identity = 215/238 (90.34%), Postives = 227/238 (95.38%), Query Frame = 0


Query: 1   MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQADLFNRAC 60
           MGPRWKGKGSEAKALADP+SKIVLQLQSSLTQSDAQGLLS CSVLYQADEEQA+L NRAC
Sbjct: 1   MGPRWKGKGSEAKALADPVSKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC 60

Query: 61  FGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDCEKNAEQLWEYMKSQKATFPE 120
           FGRPIV+A+KDKQWFQ G+EEAFYLS +L CLKIVDGQDCEKN ++LW YMKSQKATFPE
Sbjct: 61  FGRPIVSAEKDKQWFQFGMEEAFYLSYYLNCLKIVDGQDCEKNFDELWLYMKSQKATFPE 120

Query: 121 FYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVW 180
           FYKAYQ+LRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEG G SNENGRLRVW
Sbjct: 121 FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEG-SNENGRLRVW 180

Query: 181 SDFLCTIRLCGSVAKTLLVLSVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPA 239
           SDFLCTIRLCGSVAKTLLVL+VN+NG+ SVSPS LDSYSIEERTVTRWSPEQCRENPA
Sbjct: 181 SDFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVTRWSPEQCRENPA 237

[Close]

BLAST of MS020652 vs. ExPASy TrEMBL
Match: A0A6J1G6W2 (tRNA-intron lyase OS=Cucurbita moschata OX=3662 GN=LOC111451414 PE=3 SV=1)

HSP 1 Score: 441.8 bits (1135), Expect = 1.8e-120
Identity = 215/238 (90.34%), Postives = 227/238 (95.38%), Query Frame = 0


Query: 1   MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQADLFNRAC 60
           MGPRWKGKGSEAKALADP+SKIVLQLQSSLTQSDAQGLLS CSVLYQADEEQA+L NRAC
Sbjct: 1   MGPRWKGKGSEAKALADPVSKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC 60

Query: 61  FGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDCEKNAEQLWEYMKSQKATFPE 120
           FGRPIV+A+KDKQWFQ G+EEAFYLS +L CLKIVDGQDCEKN ++LW YMKSQKATFPE
Sbjct: 61  FGRPIVSAEKDKQWFQFGMEEAFYLSYYLNCLKIVDGQDCEKNFDELWLYMKSQKATFPE 120

Query: 121 FYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVW 180
           FYKAYQ+LRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEG G SNENGRLRVW
Sbjct: 121 FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEG-SNENGRLRVW 180

Query: 181 SDFLCTIRLCGSVAKTLLVLSVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPA 239
           SDFLCTIRLCGSVAKTLLVL+VN+NG+ SVSPS LDSYSIEERTVTRWSPEQCRENPA
Sbjct: 181 SDFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVTRWSPEQCRENPA 237

[Close]

BLAST of MS020652 vs. ExPASy TrEMBL
Match: A0A6J1FWV5 (tRNA-intron lyase OS=Cucurbita moschata OX=3662 GN=LOC111448962 PE=3 SV=1)

HSP 1 Score: 437.6 bits (1124), Expect = 3.4e-119
Identity = 212/240 (88.33%), Postives = 224/240 (93.33%), Query Frame = 0


Query: 1   MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQADLFNRAC 60
           MGPRWKGK SEA+ALADPMSKIVLQLQSSLTQSDAQGLLSGCS+LYQADEEQ DL NRAC
Sbjct: 44  MGPRWKGKASEARALADPMSKIVLQLQSSLTQSDAQGLLSGCSILYQADEEQTDLLNRAC 103

Query: 61  FGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDCEKNAEQLWEYMKSQKATFPE 120
           FGR I+TA+KDKQWFQ G+EEAFYLS HL CLKIVDGQD EKN ++LW+ MKS+KATFPE
Sbjct: 104 FGRTIITAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDREKNVQELWQDMKSRKATFPE 163

Query: 121 FYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVW 180
           FY AYQHLRMKNW+VRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGG SNEN RLRVW
Sbjct: 164 FYMAYQHLRMKNWIVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGG-SNENVRLRVW 223

Query: 181 SDFLCTIRLCGSVAKTLLVLSVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPAKV 240
           SDFLCTIRLCGSVAKTLLVLSVN+NGS SVSPS LD+YSIEERTVTRWSPEQCRENP KV
Sbjct: 224 SDFLCTIRLCGSVAKTLLVLSVNDNGSGSVSPSCLDNYSIEERTVTRWSPEQCRENPEKV 282

[Close]

BLAST of MS020652 vs. ExPASy TrEMBL
Match: A0A6J1JBL2 (tRNA-intron lyase OS=Cucurbita maxima OX=3661 GN=LOC111483578 PE=3 SV=1)

HSP 1 Score: 437.2 bits (1123), Expect = 4.5e-119
Identity = 212/240 (88.33%), Postives = 223/240 (92.92%), Query Frame = 0


Query: 1   MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQADLFNRAC 60
           M PRWKGK SEA+ALADPMSKIVLQLQSSLTQSDAQGLLSGCS+LYQADEEQ DL NRAC
Sbjct: 44  MEPRWKGKASEARALADPMSKIVLQLQSSLTQSDAQGLLSGCSILYQADEEQTDLLNRAC 103

Query: 61  FGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDCEKNAEQLWEYMKSQKATFPE 120
           FGR I+TAD DKQWFQ G+EEAFYLS HL CLKIVDGQD EKN ++LW+ MKSQKATFPE
Sbjct: 104 FGRTIITADMDKQWFQFGMEEAFYLSYHLNCLKIVDGQDREKNVQELWQDMKSQKATFPE 163

Query: 121 FYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVW 180
           FY AYQHLRMKNW+VRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGG SNENGRLRVW
Sbjct: 164 FYMAYQHLRMKNWIVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGG-SNENGRLRVW 223

Query: 181 SDFLCTIRLCGSVAKTLLVLSVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPAKV 240
           SDFLCTIRLCGSVAKTLLVLSVN+NG+ SVSPS LDS+SIEERTVTRWSPEQCRENP KV
Sbjct: 224 SDFLCTIRLCGSVAKTLLVLSVNDNGNGSVSPSCLDSFSIEERTVTRWSPEQCRENPEKV 282

[Close]

BLAST of MS020652 vs. TAIR 10
Match: AT3G45590.1 (splicing endonuclease 1 )

HSP 1 Score: 265.8 bits (678), Expect = 3.4e-71
Identity = 137/242 (56.61%), Postives = 170/242 (70.25%), Query Frame = 0


Query: 1   MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQADLFNRAC 60
           M PRWK KG+EAKALA+P+SK V +L+SSLTQ++A G LS C+VL   + E+A+L +R C
Sbjct: 1   MAPRWKWKGAEAKALAEPVSKTVSELRSSLTQTEALGFLSSCNVLLSVESEEAELLDRCC 60

Query: 61  FGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKI-VDGQDCEKNAEQLWEYMKSQKATFP 120
           FGR +V A+KDK+W QL  EEAF+L   LKC+KI + G+  E N   LW  M S K  F 
Sbjct: 61  FGRLVVGAEKDKRWIQLSFEEAFFLFYKLKCIKICLHGRSLE-NEVDLWRSMSSFKQDFA 120

Query: 121 EFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRV 180
             YKAY HLR KNW+VR G QYGVDFV YRHHP+LVHSE+AVLV S GG D     RL+V
Sbjct: 121 ILYKAYSHLRSKNWIVRSGLQYGVDFVVYRHHPSLVHSEYAVLVQSIGGND-----RLKV 180

Query: 181 WSDFLCTIRLCGSVAKTLLVLSVNN--NGSSSVSPSFLDSYSIEERTVTRWSPEQCRENP 240
           WSD  C++RL GSVAK+LLVL VN   N      P  L+ Y++EE+T+ RWSPE  RE+ 
Sbjct: 181 WSDIHCSVRLTGSVAKSLLVLYVNRKVNTEKMNLPLCLEDYTVEEQTIRRWSPELSREDE 236

[Close]

BLAST of MS020652 vs. TAIR 10
Match: AT3G45590.2 (splicing endonuclease 1 )

HSP 1 Score: 265.8 bits (678), Expect = 3.4e-71
Identity = 137/242 (56.61%), Postives = 170/242 (70.25%), Query Frame = 0


Query: 1   MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQADLFNRAC 60
           M PRWK KG+EAKALA+P+SK V +L+SSLTQ++A G LS C+VL   + E+A+L +R C
Sbjct: 1   MAPRWKWKGAEAKALAEPVSKTVSELRSSLTQTEALGFLSSCNVLLSVESEEAELLDRCC 60

Query: 61  FGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKI-VDGQDCEKNAEQLWEYMKSQKATFP 120
           FGR +V A+KDK+W QL  EEAF+L   LKC+KI + G+  E N   LW  M S K  F 
Sbjct: 61  FGRLVVGAEKDKRWIQLSFEEAFFLFYKLKCIKICLHGRSLE-NEVDLWRSMSSFKQDFA 120

Query: 121 EFYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRV 180
             YKAY HLR KNW+VR G QYGVDFV YRHHP+LVHSE+AVLV S GG D     RL+V
Sbjct: 121 ILYKAYSHLRSKNWIVRSGLQYGVDFVVYRHHPSLVHSEYAVLVQSIGGND-----RLKV 180

Query: 181 WSDFLCTIRLCGSVAKTLLVLSVNN--NGSSSVSPSFLDSYSIEERTVTRWSPEQCRENP 240
           WSD  C++RL GSVAK+LLVL VN   N      P  L+ Y++EE+T+ RWSPE  RE+ 
Sbjct: 181 WSDIHCSVRLTGSVAKSLLVLYVNRKVNTEKMNLPLCLEDYTVEEQTIRRWSPELSREDE 236

[Close]

BLAST of MS020652 vs. TAIR 10
Match: AT5G60230.1 (splicing endonuclease 2 )

HSP 1 Score: 263.8 bits (673), Expect = 1.3e-70
Identity = 133/238 (55.88%), Postives = 172/238 (72.27%), Query Frame = 0


Query: 1   MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQADLFNRAC 60
           M PRWK KG+EAKALA+P+SK V +LQ SL ++++ G LS C+VL   + EQA+L +R C
Sbjct: 1   MAPRWKWKGAEAKALAEPISKSVSELQLSLAETESSGTLSSCNVLLAVEPEQAELLDRCC 60

Query: 61  FGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDCEKNAEQLWEYMKSQKATFPE 120
           FGR +++A+K K+W QL  EEAF+L  +LKC+KI     C +N    W YMKS++  FP 
Sbjct: 61  FGRLVLSAEKIKKWIQLSFEEAFFLHYNLKCIKISLQGRCLENEVDTWLYMKSKRPNFPM 120

Query: 121 FYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVW 180
           F+KAY HLR KNWV+R G QYGVDFVAYRHHP+LVHSE++VLV S   GDS+   RLRVW
Sbjct: 121 FFKAYSHLRSKNWVLRSGLQYGVDFVAYRHHPSLVHSEYSVLVQS---GDSD---RLRVW 180

Query: 181 SDFLCTIRLCGSVAKTLLVLSVNNN--GSSSVSPSFLDSYSIEERTVTRWSPEQCREN 237
           SD  C +RL GSVAKTLL L VN N  G        L+++++EE+T++RWSPE  RE+
Sbjct: 181 SDIHCAVRLSGSVAKTLLTLYVNGNFKGEDVNLLVCLENFTVEEQTISRWSPELSRED 232

[Close]

BLAST of MS020652 vs. TAIR 10
Match: AT5G60230.2 (splicing endonuclease 2 )

HSP 1 Score: 263.8 bits (673), Expect = 1.3e-70
Identity = 133/238 (55.88%), Postives = 172/238 (72.27%), Query Frame = 0


Query: 1   MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQADLFNRAC 60
           M PRWK KG+EAKALA+P+SK V +LQ SL ++++ G LS C+VL   + EQA+L +R C
Sbjct: 6   MAPRWKWKGAEAKALAEPISKSVSELQLSLAETESSGTLSSCNVLLAVEPEQAELLDRCC 65

Query: 61  FGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDCEKNAEQLWEYMKSQKATFPE 120
           FGR +++A+K K+W QL  EEAF+L  +LKC+KI     C +N    W YMKS++  FP 
Sbjct: 66  FGRLVLSAEKIKKWIQLSFEEAFFLHYNLKCIKISLQGRCLENEVDTWLYMKSKRPNFPM 125

Query: 121 FYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVW 180
           F+KAY HLR KNWV+R G QYGVDFVAYRHHP+LVHSE++VLV S   GDS+   RLRVW
Sbjct: 126 FFKAYSHLRSKNWVLRSGLQYGVDFVAYRHHPSLVHSEYSVLVQS---GDSD---RLRVW 185

Query: 181 SDFLCTIRLCGSVAKTLLVLSVNNN--GSSSVSPSFLDSYSIEERTVTRWSPEQCREN 237
           SD  C +RL GSVAKTLL L VN N  G        L+++++EE+T++RWSPE  RE+
Sbjct: 186 SDIHCAVRLSGSVAKTLLTLYVNGNFKGEDVNLLVCLENFTVEEQTISRWSPELSRED 237

[Close]

BLAST of MS020652 vs. TAIR 10
Match: AT3G45577.1 (tRNA-intron endonucleases )

HSP 1 Score: 89.0 bits (219), Expect = 5.7e-18
Identity = 47/98 (47.96%), Postives = 57/98 (58.16%), Query Frame = 0


Query: 35  AQGLLSGCSVLYQADEEQADLFNRACFGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKI 94
           A G LS C+V      EQA+L +R CFGR +  A+KDK+W QL  EEAF+L   LKC+KI
Sbjct: 24  ALGFLSSCNVFL---SEQAELLDRYCFGRLVFGAEKDKRWIQLSYEEAFFLFYKLKCIKI 83

Query: 95  VDGQDCEKNAEQLWEYMKSQKATFPEFYKAYQHLRMKN 133
                   N   LW  ++S K  F   YKAY HLR KN
Sbjct: 84  SLHGRSLVNGVDLWRSIRSFKPNFTILYKAYSHLRSKN 118

The following BLAST results are available for this feature:

BLAST of MS020652 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022146301.1	2.2e-136	99.58	tRNA-splicing endonuclease subunit Sen2-1 [Momordica charantia]	[more]
XP_023532286.1	1.2e-121	91.18	tRNA-splicing endonuclease subunit Sen2-1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022947593.1	3.7e-120	90.34	tRNA-splicing endonuclease subunit Sen2-1-like isoform X2 [Cucurbita moschata]	[more]
XP_022947592.1	3.7e-120	90.34	tRNA-splicing endonuclease subunit Sen2-1-like isoform X1 [Cucurbita moschata]	[more]
KAG6605517.1	1.9e-119	90.34	tRNA-splicing endonuclease subunit Sen2-2, partial [Cucurbita argyrosperma subsp...	[more]

BLAST of MS020652 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1E8	4.8e-70	56.61	tRNA-splicing endonuclease subunit Sen2-1 OS=Arabidopsis thaliana OX=3702 GN=SEN...	[more]
Q9LSS3	1.8e-69	55.88	tRNA-splicing endonuclease subunit Sen2-2 OS=Arabidopsis thaliana OX=3702 GN=SEN...	[more]
Q5Z6B1	5.3e-61	52.07	Probable tRNA-splicing endonuclease subunit Sen2 OS=Oryza sativa subsp. japonica...	[more]
Q97ZY3	6.2e-09	29.85	tRNA-splicing endonuclease OS=Saccharolobus solfataricus (strain ATCC 35092 / DS...	[more]
C3MQX7	1.4e-08	28.36	tRNA-splicing endonuclease OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1...	[more]

BLAST of MS020652 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CYW3	1.1e-136	99.58	tRNA-intron lyase OS=Momordica charantia OX=3673 GN=LOC111015540 PE=3 SV=1	[more]
A0A6J1G716	1.8e-120	90.34	tRNA-intron lyase OS=Cucurbita moschata OX=3662 GN=LOC111451414 PE=3 SV=1	[more]
A0A6J1G6W2	1.8e-120	90.34	tRNA-intron lyase OS=Cucurbita moschata OX=3662 GN=LOC111451414 PE=3 SV=1	[more]
A0A6J1FWV5	3.4e-119	88.33	tRNA-intron lyase OS=Cucurbita moschata OX=3662 GN=LOC111448962 PE=3 SV=1	[more]
A0A6J1JBL2	4.5e-119	88.33	tRNA-intron lyase OS=Cucurbita maxima OX=3661 GN=LOC111483578 PE=3 SV=1	[more]

BLAST of MS020652 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G45590.1	3.4e-71	56.61	splicing endonuclease 1	[more]
AT3G45590.2	3.4e-71	56.61	splicing endonuclease 1	[more]
AT5G60230.1	1.3e-70	55.88	splicing endonuclease 2	[more]
AT5G60230.2	1.3e-70	55.88	splicing endonuclease 2	[more]
AT3G45577.1	5.7e-18	47.96	tRNA-intron endonucleases	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011856	tRNA endonuclease-like domain superfamily	GENE3D	3.40.1350.10		coord: 117..215 e-value: 1.8E-23 score: 84.3
IPR006678	tRNA intron endonuclease, N-terminal	PFAM	PF02778	tRNA_int_endo_N	coord: 36..108 e-value: 8.6E-13 score: 47.7
IPR006677	tRNA intron endonuclease, catalytic domain-like	PFAM	PF01974	tRNA_int_endo	coord: 121..207 e-value: 2.9E-19 score: 68.9
IPR006676	tRNA-splicing endonuclease	PANTHER	PTHR21227	TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2	coord: 1..239
None	No IPR available	PANTHER	PTHR21227:SF2	TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2-1-LIKE	coord: 1..239
IPR036167	tRNA intron endonuclease, catalytic domain-like superfamily	SUPERFAMILY	53032	tRNA-intron endonuclease catalytic domain-like	coord: 118..207

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS020652.1	MS020652.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation
molecular_function	GO:0004518	nuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000213	tRNA-intron endonuclease activity