MS020589 (gene) Bitter gourd (TR) v1

Overview


Name	MS020589
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	ribosome-binding factor A family protein
Location	scaffold375: 1431466 .. 1433904 (-)
RNA-Seq Expression	MS020589
Synteny	MS020589

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGCATCTCCTCCAGCAAATTCATCCTCACCCCTACCACTCCCCACTCAAACTTTCATCTTCCACACGCCCCTTTCAATTTCAACCTCCGCCGCCATGGATTTCCTCCCCGAATCCCATTTCCCTCCTCCGCCCCCGTCCGGTGACGGGCGGCGCAACCATTCGGTGTATGGCCAATTCCCGGAGAGTCAAAATGGTGGCCAAGCAGATTCAGAGGGAGCTTTCCGATATGCTTCTCACCGATAAGGTGTTGCAGTACGCCATCCTTCCCGAGGCCTCTTTGGGAGCGGATAAGTACCTCTCCTCTCTCACCACCATCACCGATGTTGAAGTCTCTGCCGATTTGCAGGTATTTTCGATTTCGGAAATTCTGCAATTCATGAGCTGAGCAGGATTGATTTCTCTCTTTTTTTGCTATTATTGTGATTTTTTGTAATGGGTAGCAGAATTTGAAGTGTACGGACTAAAGGGTGCTTTTATACCTGAAAATGACTGTAGAAATGAATATTGTCTCTGAGATTTGCACTATACTGAAGAGGTGCATTTGTTGAAGAGAGGGGATTTTTTAATCGAAATTTAACTTGATAGATTGCTATATGGTTCAATTGCTGGTTGCATCTTAGGTTGTGGGTATTGTGTAGTTTAGCCACTGGGAAATGAAATGGTTAGAGGCTTCACCCCATTTGGAGATGTTTGGCTTTGGTCGAAGACATTTTTGACATAAGTTATTTGAAGCACAACTTATGAAGTATTTGAAATTTTTACTGCAAGGATTAGACTTTTGCGGAATGTATAGAAGAGATCTACTGAGAAATCATATGCTTGAAAGTTGAAAGTTCACTTTAGCCTTGATAGATAAGCACTGCCATGGCATTTATACCAAAGAGGCTAACAATGGAAGTTCATTGATATGTTTTTCTTTTAAATGCCCTCCATTCGAGAACAATCCATATCACTCTTACTTCAAGAACTTGAAGTGGGGATTGTGTGATGAAATTGTGGTTTTTGATCGATTTTGAATTTATTCAACATTGCCTTATTTTTTCCATATAGCTCTTCTCCTTTAGACAGTTCATGAGTTCCTATGCAATTTAGGTAGCATGTGGATGTGTATGTGTTCAATAAACTTAGGGTGGGTATGGTATATCTTTTTAATTTAAAAACTTTTTTTTTTGCACCATTTTATGAGTTATCATCTCTTAGGTGCTTAAACTACAAGTGTGTCAATCACTTTAAAATAACTTTTTAGACAATCATGTGTCTGAGTGTTTCTTCAAAAATGTATTTTAAAGTAATCCAATTTTTTAAAAACTGTTCTATTACCAAACACGGTGGATTTTTTAAAAGTAGTATACTATATTAAACACACTTTAAAGTAGTAATTATTTCAAAGGTGTTCAAAGAAACAGTGCTTCTTTTTCGTTTTGGTTTATTTCTTGGGCATTTTTTCCAATACCTCAACTGATTAGTAATTGTTGTTTGTTATCTCATGAATACTGATACACAGGTGGTTAAAGTATATGTATCTGTCTTTGGTGATGAAAGAGGAAAGGATGTTGCTATTGCTGGATTGAAATCAAAAGCTAAATATGTCCGCAGTGTATTGGGAAGGCGAATGAAGCTTCGGCTAACTCCCGAGATACGTTTCATAGAAGATGAATCTTTCGAAAGAGGAAGCAGGGTAAATAAAATCTTTATGTTTTTGCTTCTTGTACAACTTCTATTTCTCTGGCTGGAGGCCAGGTCAATTACTTATAACTTAAAGTTCTATGTTTATCTTATTCTTAAGATTTCCTTCCACAAGATGTTTTTTGTCTCATTTTCTTCATTTTTTTCCATTGCACATGTTTCCAATTTTTTGGTACAAGGATGCTGTGACAATAAGTGGGTTTCTTGCCTTACAAACTTTTGGTTTATCGTCCATTTCCTATTGAAATATCTCTTAGAAGTTCTGGAAATGTCATAAATATGGTTTTTGGAGAGTGCAATGGTGACCCGACTAGTAAGGGCTTAGGATTTTTGGAGTTTCTCTCCAAGGTTTTGGCTTCTAGTCTCTCTATGGAAAACTTAATAATTTAAGATCCTTGTTGTCTCTCGAAAGTAGCCACAAGTTGGTGAATCTCCTTTGGGATTAGTGGAGTCGGGTCACGGGCATTATGAAAAGTGTAGAGCTTTGCTCCCTATATGCAATGGGTAGGCTTTTCTTGGGAAGAAAGGACTCATGTCTGAAACTCATGCTATTATTGCCTGTGAAAATTTCTGTGTCTTATGATATGAGCGATGTACTTTTTTGTTTGAACTTTTCCAGGTGATTGCCATATTGGATCGGATCAAGGATGAAAAGAAAGACACCGAGCTATCCGAATTATCCAATACTCCTCAAGACGACAGGGACTGGGAAGGGGATGATGCTGATGAAGACATAATATATGTACAA

mRNA sequence

ATGCCGCATCTCCTCCAGCAAATTCATCCTCACCCCTACCACTCCCCACTCAAACTTTCATCTTCCACACGCCCCTTTCAATTTCAACCTCCGCCGCCATGGATTTCCTCCCCGAATCCCATTTCCCTCCTCCGCCCCCGTCCGGTGACGGGCGGCGCAACCATTCGGTGTATGGCCAATTCCCGGAGAGTCAAAATGGTGGCCAAGCAGATTCAGAGGGAGCTTTCCGATATGCTTCTCACCGATAAGGTGTTGCAGTACGCCATCCTTCCCGAGGCCTCTTTGGGAGCGGATAAGTACCTCTCCTCTCTCACCACCATCACCGATGTTGAAGTCTCTGCCGATTTGCAGGTGGTTAAAGTATATGTATCTGTCTTTGGTGATGAAAGAGGAAAGGATGTTGCTATTGCTGGATTGAAATCAAAAGCTAAATATGTCCGCAGTGTATTGGGAAGGCGAATGAAGCTTCGGCTAACTCCCGAGATACGTTTCATAGAAGATGAATCTTTCGAAAGAGGAAGCAGGGTGATTGCCATATTGGATCGGATCAAGGATGAAAAGAAAGACACCGAGCTATCCGAATTATCCAATACTCCTCAAGACGACAGGGACTGGGAAGGGGATGATGCTGATGAAGACATAATATATGTACAA

Coding sequence (CDS)

ATGCCGCATCTCCTCCAGCAAATTCATCCTCACCCCTACCACTCCCCACTCAAACTTTCATCTTCCACACGCCCCTTTCAATTTCAACCTCCGCCGCCATGGATTTCCTCCCCGAATCCCATTTCCCTCCTCCGCCCCCGTCCGGTGACGGGCGGCGCAACCATTCGGTGTATGGCCAATTCCCGGAGAGTCAAAATGGTGGCCAAGCAGATTCAGAGGGAGCTTTCCGATATGCTTCTCACCGATAAGGTGTTGCAGTACGCCATCCTTCCCGAGGCCTCTTTGGGAGCGGATAAGTACCTCTCCTCTCTCACCACCATCACCGATGTTGAAGTCTCTGCCGATTTGCAGGTGGTTAAAGTATATGTATCTGTCTTTGGTGATGAAAGAGGAAAGGATGTTGCTATTGCTGGATTGAAATCAAAAGCTAAATATGTCCGCAGTGTATTGGGAAGGCGAATGAAGCTTCGGCTAACTCCCGAGATACGTTTCATAGAAGATGAATCTTTCGAAAGAGGAAGCAGGGTGATTGCCATATTGGATCGGATCAAGGATGAAAAGAAAGACACCGAGCTATCCGAATTATCCAATACTCCTCAAGACGACAGGGACTGGGAAGGGGATGATGCTGATGAAGACATAATATATGTACAA

Protein sequence

MPHLLQQIHPHPYHSPLKLSSSTRPFQFQPPPPWISSPNPISLLRPRPVTGGATIRCMANSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADLQVVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGRRMKLRLTPEIRFIEDESFERGSRVIAILDRIKDEKKDTELSELSNTPQDDRDWEGDDADEDIIYVQ

Homology

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BLAST of MS020589 vs. NCBI nr
Match: XP_022146092.1 (probable ribosome-binding factor A, chloroplastic [Momordica charantia])

HSP 1 Score: 417.2 bits (1071), Expect = 9.0e-113
Identity = 217/218 (99.54%), Postives = 218/218 (100.00%), Query Frame = 0


Query: 1   MPHLLQQIHPHPYHSPLKLSSSTRPFQFQPPPPWISSPNPISLLRPRPVTGGATIRCMAN 60
           MPHLLQQIHPHPYHSPLKLSSSTRPFQFQPPPPWISSPNPI+LLRPRPVTGGATIRCMAN
Sbjct: 1   MPHLLQQIHPHPYHSPLKLSSSTRPFQFQPPPPWISSPNPIALLRPRPVTGGATIRCMAN 60

Query: 61  SRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADLQVVK 120
           SRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADLQVVK
Sbjct: 61  SRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADLQVVK 120

Query: 121 VYVSVFGDERGKDVAIAGLKSKAKYVRSVLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 180
           VYVSVFGDERGKDVAIAGLKSKAKYVRSVLGRRMKLRLTPEIRFIEDESFERGSRVIAIL
Sbjct: 121 VYVSVFGDERGKDVAIAGLKSKAKYVRSVLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 180

Query: 181 DRIKDEKKDTELSELSNTPQDDRDWEGDDADEDIIYVQ 219
           DRIKDEKKDTELSELSNTPQDDRDWEGDDADEDIIYVQ
Sbjct: 181 DRIKDEKKDTELSELSNTPQDDRDWEGDDADEDIIYVQ 218

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BLAST of MS020589 vs. NCBI nr
Match: XP_038900542.1 (probable ribosome-binding factor A, chloroplastic [Benincasa hispida])

HSP 1 Score: 338.2 bits (866), Expect = 5.3e-89
Identity = 191/227 (84.14%), Postives = 200/227 (88.11%), Query Frame = 0


Query: 1   MPHLLQQIHPHPYHSPLKLSSSTR----PFQFQPPPPWISSPNPISLLRPRPVTGGATIR 60
           MPHLLQQIHP P+ SPLKLSSS      P QFQ   PW  SP+ ++LLRP P   GATIR
Sbjct: 1   MPHLLQQIHPQPHLSPLKLSSSLPSSPFPSQFQASRPWFYSPSSVTLLRP-PRMMGATIR 60

Query: 61  CMANSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADL 120
           CMANSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADL
Sbjct: 61  CMANSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADL 120

Query: 121 QVVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGRRMKLRLTPEIRFIEDESFERGSRV 180
           QVVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLG+RMKLRLTPEIRFIEDESFERGSRV
Sbjct: 121 QVVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 180

Query: 181 IAILDRIKDEKKDT-----ELSELSNTPQDDRDWEGDDADEDIIYVQ 219
           IAILDRIKD+KKD      E SELS+T +DDRDW+GDDADEDIIYVQ
Sbjct: 181 IAILDRIKDKKKDNDDEDFEPSELSDTLEDDRDWKGDDADEDIIYVQ 226

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BLAST of MS020589 vs. NCBI nr
Match: XP_023006992.1 (probable ribosome-binding factor A, chloroplastic [Cucurbita maxima])

HSP 1 Score: 334.3 bits (856), Expect = 7.7e-88
Identity = 182/227 (80.18%), Postives = 199/227 (87.67%), Query Frame = 0


Query: 1   MPHLLQQIHPHPYHSPLKLSSSTR----PFQFQPPPPWISSPNPISLLRPRPVTGGATIR 60
           MPHLLQQIHP P+H PLKLSSS      P QF   PP   SPN ++L+R RPV  GATI+
Sbjct: 1   MPHLLQQIHPQPHHFPLKLSSSLASSRFPSQFLTSPPCFCSPNSVALVRQRPVMRGATIQ 60

Query: 61  CMANSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADL 120
           CMANSRRVKMV+KQIQRELS+MLLTDKVLQ+AILPEASLGADKYLSSLTTITDVE+S+DL
Sbjct: 61  CMANSRRVKMVSKQIQRELSNMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEISSDL 120

Query: 121 QVVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGRRMKLRLTPEIRFIEDESFERGSRV 180
           QVVKVYVSVFGDERGKD+A+AGLKSKAKYVRSVLG+RMKLRLTPEIRFIEDESFERGSRV
Sbjct: 121 QVVKVYVSVFGDERGKDIAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 180

Query: 181 IAILDRIKDEK-----KDTELSELSNTPQDDRDWEGDDADEDIIYVQ 219
           IAILDRIKDEK     +D E SELS+ PQDDRDWE D+ADEDIIY+Q
Sbjct: 181 IAILDRIKDEKNNIDDEDMEKSELSDAPQDDRDWEEDEADEDIIYIQ 227

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BLAST of MS020589 vs. NCBI nr
Match: XP_022948118.1 (probable ribosome-binding factor A, chloroplastic [Cucurbita moschata])

HSP 1 Score: 334.3 bits (856), Expect = 7.7e-88
Identity = 184/227 (81.06%), Postives = 198/227 (87.22%), Query Frame = 0


Query: 1   MPHLLQQIHPHPYHSPLKLSSSTR----PFQFQPPPPWISSPNPISLLRPRPVTGGATIR 60
           MPHLLQQIHP  +H PLKLSSS      P QF   PP   SPN ++L+R RPV  GATIR
Sbjct: 1   MPHLLQQIHPQSHHFPLKLSSSLASSRFPSQFLASPPCFCSPNSVALVRRRPVMRGATIR 60

Query: 61  CMANSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADL 120
           CMANSRRVKMV+KQIQRELS+MLLTDKVLQ+AILPEASLGADKYLSSLTTITDVE+S+DL
Sbjct: 61  CMANSRRVKMVSKQIQRELSNMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEISSDL 120

Query: 121 QVVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGRRMKLRLTPEIRFIEDESFERGSRV 180
           QVVKVYVSVFGDERGKD+A+AGLKSKAKYVRSVLG+RMKLRLTPEIRFIEDESFERGSRV
Sbjct: 121 QVVKVYVSVFGDERGKDIAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 180

Query: 181 IAILDRIKDEK-----KDTELSELSNTPQDDRDWEGDDADEDIIYVQ 219
           IAILDRIKDEK     +D E SELS+ PQDDRDWE DDADEDIIYVQ
Sbjct: 181 IAILDRIKDEKNNIDDEDMEQSELSDAPQDDRDWEEDDADEDIIYVQ 227

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BLAST of MS020589 vs. NCBI nr
Match: XP_023534592.1 (probable ribosome-binding factor A, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 332.0 bits (850), Expect = 3.8e-87
Identity = 182/227 (80.18%), Postives = 198/227 (87.22%), Query Frame = 0


Query: 1   MPHLLQQIHPHPYHSPLKLSSSTR----PFQFQPPPPWISSPNPISLLRPRPVTGGATIR 60
           MPHLLQQIHP  +H PLKLSSS      P QF   PP   SPN ++++R RPV  G TIR
Sbjct: 1   MPHLLQQIHPQSHHFPLKLSSSLASSRFPSQFLASPPCFCSPNSVAVVRRRPVMRGVTIR 60

Query: 61  CMANSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADL 120
           CMANSRRVKMV+KQIQRELS+MLLTDKVLQ+AILPEASLGADKYLSSLTTITDVE+S+DL
Sbjct: 61  CMANSRRVKMVSKQIQRELSNMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEISSDL 120

Query: 121 QVVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGRRMKLRLTPEIRFIEDESFERGSRV 180
           QVVKVYVSVFGDERGKD+A+AGLKSKAKYVRSVLG+RMKLRLTPEIRFIEDESFERGSRV
Sbjct: 121 QVVKVYVSVFGDERGKDIAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 180

Query: 181 IAILDRIKDEK-----KDTELSELSNTPQDDRDWEGDDADEDIIYVQ 219
           IAILDRIKDEK     +D E SELS++PQDDRDWE DDADEDIIYVQ
Sbjct: 181 IAILDRIKDEKNNIDDEDMEQSELSDSPQDDRDWEEDDADEDIIYVQ 227

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BLAST of MS020589 vs. ExPASy Swiss-Prot
Match: O65693 (Probable ribosome-binding factor A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g34730 PE=2 SV=2)

HSP 1 Score: 248.4 bits (633), Expect = 7.2e-65
Identity = 147/223 (65.92%), Postives = 173/223 (77.58%), Query Frame = 0


Query: 1   MPHLLQQIHPH---PYHSPL-KLSSSTRPFQFQPPPPWISSPNPISLLRPRPVTGGATIR 60
           MP+LL     H    +H P+  +SS T+ F F      ++    +S+ R        T+R
Sbjct: 1   MPNLLHTNQSHFFFLHHPPIYTVSSKTQAFHFPQSMAPVNLRTNLSVRR--------TVR 60

Query: 61  CMANSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADL 120
           CMAN RRVKMVAKQI RELSDMLLTD VLQ+A+LPEA+LGAD+YLSSLTTI+DVEVS DL
Sbjct: 61  CMANPRRVKMVAKQIMRELSDMLLTDTVLQHAVLPEAALGADRYLSSLTTISDVEVSNDL 120

Query: 121 QVVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGRRMKLRLTPEIRFIEDESFERGSRV 180
           QVVKVYVSVFGD+RGKDVAIAGLKSKAKYVRS LG+RMKLRLTPE+RFIEDE+ ERGSRV
Sbjct: 121 QVVKVYVSVFGDDRGKDVAIAGLKSKAKYVRSELGKRMKLRLTPEVRFIEDEAMERGSRV 180

Query: 181 IAILDRIKDEKKDTE-LSELSNTPQDDRDWEGDDADEDIIYVQ 219
           IAILD+IK EK   E  +E S++ +DD+DWE DD DEDIIYV+
Sbjct: 181 IAILDKIKAEKGSGEGKTEPSDSTEDDQDWEVDDPDEDIIYVK 215

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BLAST of MS020589 vs. ExPASy Swiss-Prot
Match: Q93LL7 (Ribosome-binding factor A OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) OX=63737 GN=rbfA PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.3e-21
Identity = 62/149 (41.61%), Postives = 92/149 (61.74%), Query Frame = 0


Query: 58  MANSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADLQ 117
           MA +RRV  VA+ I+RE+S MLL              +  D+  + + ++TDV+VS DLQ
Sbjct: 1   MATNRRVSRVAELIKREVSQMLLN------------GIKDDRVGTGMVSVTDVDVSGDLQ 60

Query: 118 VVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGRRMKLRLTPEIRFIEDESFERGSRVI 177
             K+YVS++G +  K   +AGLKS   YVRS LG R++LR TPE+ F+ED S ERG++V+
Sbjct: 61  HAKIYVSIYGTDEAKVETMAGLKSATGYVRSELGARVRLRRTPEVIFLEDRSIERGNKVL 120

Query: 178 AILDRIK-DEKKDTELSELSNTPQDDRDW 206
           A+L ++  D   +  L+   NT +DD  +
Sbjct: 121 ALLSQLNHDRPPENLLAVEDNTDEDDESF 137

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BLAST of MS020589 vs. ExPASy Swiss-Prot
Match: B8HWS1 (Ribosome-binding factor A OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=395961 GN=rbfA PE=3 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.7e-21
Identity = 57/140 (40.71%), Postives = 93/140 (66.43%), Query Frame = 0


Query: 58  MANSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADLQ 117
           MA  RRV  VA+ I+RE+S ML+            + +  D+  S + ++TDV++S DLQ
Sbjct: 1   MATDRRVARVAELIKREISQMLM------------SGIKDDRVGSGMVSVTDVDLSGDLQ 60

Query: 118 VVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGRRMKLRLTPEIRFIEDESFERGSRVI 177
             K++VS++G E  +   +AGLK+   YVRS LG R++LR TPE+ F+ED S ERG++V+
Sbjct: 61  HAKIFVSIYGTEAARAETMAGLKAATGYVRSELGHRVRLRRTPEVVFLEDRSLERGTQVL 120

Query: 178 AILDRIKDEK-KDTELSELS 197
           ++L+R+ +E+ K+ +L E++
Sbjct: 121 SLLNRLSEERQKNADLDEMA 128

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BLAST of MS020589 vs. ExPASy Swiss-Prot
Match: Q8Z0M8 (Ribosome-binding factor A OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rbfA PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 4.9e-21
Identity = 56/145 (38.62%), Postives = 91/145 (62.76%), Query Frame = 0


Query: 58  MANSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADLQ 117
           MA +RRV  VA+ I+RE+S ML+              +  D+  + + ++TDV+VS DLQ
Sbjct: 1   MATNRRVSRVAELIKREVSQMLIN------------GIKDDRVGTGMVSVTDVDVSGDLQ 60

Query: 118 VVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGRRMKLRLTPEIRFIEDESFERGSRVI 177
             K+YVS++G E  K   +AGLKS   +VRS LG R++LR TPE+ FIED S ERG++V+
Sbjct: 61  HAKIYVSIYGTEEAKAETMAGLKSATGFVRSELGARVRLRRTPEVTFIEDRSIERGTKVL 120

Query: 178 AILDRIKDEKKDTELSELSNTPQDD 203
            +L+++++ +   ++    ++  +D
Sbjct: 121 TLLNKLENARSPDDIPSADDSLDED 133

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BLAST of MS020589 vs. ExPASy Swiss-Prot
Match: Q3M9Q8 (Ribosome-binding factor A OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=rbfA PE=3 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.1e-20
Identity = 56/145 (38.62%), Postives = 91/145 (62.76%), Query Frame = 0


Query: 58  MANSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADLQ 117
           MA +RRV  VA+ I+RE+S ML+              +  D+  + + ++TDV+VS DLQ
Sbjct: 1   MATNRRVSRVAELIKREVSQMLIN------------GIKDDRVGTGMVSVTDVDVSGDLQ 60

Query: 118 VVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGRRMKLRLTPEIRFIEDESFERGSRVI 177
             K+YVS++G E  K   +AGLKS   +VRS LG R++LR TPE+ FIED S ERG++V+
Sbjct: 61  HAKIYVSIYGTEEAKAETMAGLKSATGFVRSELGARVRLRRTPEVTFIEDRSIERGTKVL 120

Query: 178 AILDRIKDEKKDTELSELSNTPQDD 203
            +L+++++ +   ++    ++  +D
Sbjct: 121 TLLNKLENARSLDDIPSADDSLDED 133

[Close]

BLAST of MS020589 vs. ExPASy TrEMBL
Match: A0A6J1CYL8 (probable ribosome-binding factor A, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111015387 PE=3 SV=1)

HSP 1 Score: 417.2 bits (1071), Expect = 4.3e-113
Identity = 217/218 (99.54%), Postives = 218/218 (100.00%), Query Frame = 0


Query: 1   MPHLLQQIHPHPYHSPLKLSSSTRPFQFQPPPPWISSPNPISLLRPRPVTGGATIRCMAN 60
           MPHLLQQIHPHPYHSPLKLSSSTRPFQFQPPPPWISSPNPI+LLRPRPVTGGATIRCMAN
Sbjct: 1   MPHLLQQIHPHPYHSPLKLSSSTRPFQFQPPPPWISSPNPIALLRPRPVTGGATIRCMAN 60

Query: 61  SRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADLQVVK 120
           SRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADLQVVK
Sbjct: 61  SRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADLQVVK 120

Query: 121 VYVSVFGDERGKDVAIAGLKSKAKYVRSVLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 180
           VYVSVFGDERGKDVAIAGLKSKAKYVRSVLGRRMKLRLTPEIRFIEDESFERGSRVIAIL
Sbjct: 121 VYVSVFGDERGKDVAIAGLKSKAKYVRSVLGRRMKLRLTPEIRFIEDESFERGSRVIAIL 180

Query: 181 DRIKDEKKDTELSELSNTPQDDRDWEGDDADEDIIYVQ 219
           DRIKDEKKDTELSELSNTPQDDRDWEGDDADEDIIYVQ
Sbjct: 181 DRIKDEKKDTELSELSNTPQDDRDWEGDDADEDIIYVQ 218

[Close]

BLAST of MS020589 vs. ExPASy TrEMBL
Match: A0A6J1KXB5 (probable ribosome-binding factor A, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111499618 PE=3 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 3.7e-88
Identity = 182/227 (80.18%), Postives = 199/227 (87.67%), Query Frame = 0


Query: 1   MPHLLQQIHPHPYHSPLKLSSSTR----PFQFQPPPPWISSPNPISLLRPRPVTGGATIR 60
           MPHLLQQIHP P+H PLKLSSS      P QF   PP   SPN ++L+R RPV  GATI+
Sbjct: 1   MPHLLQQIHPQPHHFPLKLSSSLASSRFPSQFLTSPPCFCSPNSVALVRQRPVMRGATIQ 60

Query: 61  CMANSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADL 120
           CMANSRRVKMV+KQIQRELS+MLLTDKVLQ+AILPEASLGADKYLSSLTTITDVE+S+DL
Sbjct: 61  CMANSRRVKMVSKQIQRELSNMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEISSDL 120

Query: 121 QVVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGRRMKLRLTPEIRFIEDESFERGSRV 180
           QVVKVYVSVFGDERGKD+A+AGLKSKAKYVRSVLG+RMKLRLTPEIRFIEDESFERGSRV
Sbjct: 121 QVVKVYVSVFGDERGKDIAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 180

Query: 181 IAILDRIKDEK-----KDTELSELSNTPQDDRDWEGDDADEDIIYVQ 219
           IAILDRIKDEK     +D E SELS+ PQDDRDWE D+ADEDIIY+Q
Sbjct: 181 IAILDRIKDEKNNIDDEDMEKSELSDAPQDDRDWEEDEADEDIIYIQ 227

[Close]

BLAST of MS020589 vs. ExPASy TrEMBL
Match: A0A6J1G8H2 (probable ribosome-binding factor A, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111451795 PE=3 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 3.7e-88
Identity = 184/227 (81.06%), Postives = 198/227 (87.22%), Query Frame = 0


Query: 1   MPHLLQQIHPHPYHSPLKLSSSTR----PFQFQPPPPWISSPNPISLLRPRPVTGGATIR 60
           MPHLLQQIHP  +H PLKLSSS      P QF   PP   SPN ++L+R RPV  GATIR
Sbjct: 1   MPHLLQQIHPQSHHFPLKLSSSLASSRFPSQFLASPPCFCSPNSVALVRRRPVMRGATIR 60

Query: 61  CMANSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADL 120
           CMANSRRVKMV+KQIQRELS+MLLTDKVLQ+AILPEASLGADKYLSSLTTITDVE+S+DL
Sbjct: 61  CMANSRRVKMVSKQIQRELSNMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEISSDL 120

Query: 121 QVVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGRRMKLRLTPEIRFIEDESFERGSRV 180
           QVVKVYVSVFGDERGKD+A+AGLKSKAKYVRSVLG+RMKLRLTPEIRFIEDESFERGSRV
Sbjct: 121 QVVKVYVSVFGDERGKDIAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 180

Query: 181 IAILDRIKDEK-----KDTELSELSNTPQDDRDWEGDDADEDIIYVQ 219
           IAILDRIKDEK     +D E SELS+ PQDDRDWE DDADEDIIYVQ
Sbjct: 181 IAILDRIKDEKNNIDDEDMEQSELSDAPQDDRDWEEDDADEDIIYVQ 227

[Close]

BLAST of MS020589 vs. ExPASy TrEMBL
Match: A0A0A0LIX7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G252090 PE=3 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 6.5e-85
Identity = 182/221 (82.35%), Postives = 192/221 (86.88%), Query Frame = 0


Query: 4   LLQQIHPHPYHSPLK-LSSSTRPFQFQPPPPWISSPNPISLLRPRPVTGGATIRCMANSR 63
           LLQQIHP  Y SPLK L SS  P QFQ   P + SP  ++LL P PV  GATIRCMANSR
Sbjct: 5   LLQQIHPQFYFSPLKFLQSSPFPSQFQASRPCVYSPTSVTLLPPPPVMRGATIRCMANSR 64

Query: 64  RVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADLQVVKVY 123
           R+KMVAKQIQRELSDMLLTDKVLQ+AILPEASLGADKYLSSLTTITDVEVSADLQVVKVY
Sbjct: 65  RIKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSADLQVVKVY 124

Query: 124 VSVFGDERGKDVAIAGLKSKAKYVRSVLGRRMKLRLTPEIRFIEDESFERGSRVIAILDR 183
           VSVFGDERGKDVAIAGLKSKAKYVRSVLG+RMKLRLTPEIRFIEDESFERGSRVIAILDR
Sbjct: 125 VSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIAILDR 184

Query: 184 IKDEKKDT-----ELSELSNTPQDDRDWEGDDADEDIIYVQ 219
           IKD+KKDT     +  ELS+   DDRDW+GDDADEDIIYVQ
Sbjct: 185 IKDKKKDTVDEDFDQPELSDALDDDRDWKGDDADEDIIYVQ 225

[Close]

BLAST of MS020589 vs. ExPASy TrEMBL
Match: A0A1S4E1P3 (probable ribosome-binding factor A, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103497269 PE=3 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 7.2e-84
Identity = 183/228 (80.26%), Postives = 195/228 (85.53%), Query Frame = 0


Query: 1   MPH-LLQQIHPHPYHSPLKLSSSTR----PFQFQPPPPWISSPNPISLLRPRPVTGGATI 60
           MPH LLQQIHP  Y SPLK SSS +    P QFQ   P   SP+ ++LL P PV  GATI
Sbjct: 1   MPHLLLQQIHPQFYFSPLKFSSSLQSSPFPSQFQASRPCFYSPSSVNLLPPPPVMRGATI 60

Query: 61  RCMANSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSAD 120
           RCMANSRRVKMVAKQIQRELSDMLLTDKVLQ+AILPEASLGADKYLSSLTTITDVEVSAD
Sbjct: 61  RCMANSRRVKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSAD 120

Query: 121 LQVVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGRRMKLRLTPEIRFIEDESFERGSR 180
           LQVVKVYVSVFGDE+GKDVA+AGLKSKAKYVRSVLG+RMKLRLTPEI FIEDESFERGSR
Sbjct: 121 LQVVKVYVSVFGDEKGKDVAMAGLKSKAKYVRSVLGKRMKLRLTPEICFIEDESFERGSR 180

Query: 181 VIAILDRIKDEKKDT-----ELSELSNTPQDDRDWEGDDADEDIIYVQ 219
           VIAILDRIKD+KKDT     +  ELS+   DDRDW+GDDADEDIIYVQ
Sbjct: 181 VIAILDRIKDKKKDTIDEDFDEPELSDALDDDRDWKGDDADEDIIYVQ 228

[Close]

BLAST of MS020589 vs. TAIR 10
Match: AT4G34730.1 (ribosome-binding factor A family protein )

HSP 1 Score: 248.4 bits (633), Expect = 5.1e-66
Identity = 147/223 (65.92%), Postives = 173/223 (77.58%), Query Frame = 0


Query: 1   MPHLLQQIHPH---PYHSPL-KLSSSTRPFQFQPPPPWISSPNPISLLRPRPVTGGATIR 60
           MP+LL     H    +H P+  +SS T+ F F      ++    +S+ R        T+R
Sbjct: 1   MPNLLHTNQSHFFFLHHPPIYTVSSKTQAFHFPQSMAPVNLRTNLSVRR--------TVR 60

Query: 61  CMANSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADL 120
           CMAN RRVKMVAKQI RELSDMLLTD VLQ+A+LPEA+LGAD+YLSSLTTI+DVEVS DL
Sbjct: 61  CMANPRRVKMVAKQIMRELSDMLLTDTVLQHAVLPEAALGADRYLSSLTTISDVEVSNDL 120

Query: 121 QVVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGRRMKLRLTPEIRFIEDESFERGSRV 180
           QVVKVYVSVFGD+RGKDVAIAGLKSKAKYVRS LG+RMKLRLTPE+RFIEDE+ ERGSRV
Sbjct: 121 QVVKVYVSVFGDDRGKDVAIAGLKSKAKYVRSELGKRMKLRLTPEVRFIEDEAMERGSRV 180

Query: 181 IAILDRIKDEKKDTE-LSELSNTPQDDRDWEGDDADEDIIYVQ 219
           IAILD+IK EK   E  +E S++ +DD+DWE DD DEDIIYV+
Sbjct: 181 IAILDKIKAEKGSGEGKTEPSDSTEDDQDWEVDDPDEDIIYVK 215

The following BLAST results are available for this feature:

BLAST of MS020589 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022146092.1	9.0e-113	99.54	probable ribosome-binding factor A, chloroplastic [Momordica charantia]	[more]
XP_038900542.1	5.3e-89	84.14	probable ribosome-binding factor A, chloroplastic [Benincasa hispida]	[more]
XP_023006992.1	7.7e-88	80.18	probable ribosome-binding factor A, chloroplastic [Cucurbita maxima]	[more]
XP_022948118.1	7.7e-88	81.06	probable ribosome-binding factor A, chloroplastic [Cucurbita moschata]	[more]
XP_023534592.1	3.8e-87	80.18	probable ribosome-binding factor A, chloroplastic [Cucurbita pepo subsp. pepo]	[more]

BLAST of MS020589 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65693	7.2e-65	65.92	Probable ribosome-binding factor A, chloroplastic OS=Arabidopsis thaliana OX=370...	[more]
Q93LL7	1.3e-21	41.61	Ribosome-binding factor A OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) ...	[more]
B8HWS1	1.7e-21	40.71	Ribosome-binding factor A OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=39...	[more]
Q8Z0M8	4.9e-21	38.62	Ribosome-binding factor A OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576...	[more]
Q3M9Q8	1.1e-20	38.62	Ribosome-binding factor A OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937...	[more]

BLAST of MS020589 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CYL8	4.3e-113	99.54	probable ribosome-binding factor A, chloroplastic OS=Momordica charantia OX=3673...	[more]
A0A6J1KXB5	3.7e-88	80.18	probable ribosome-binding factor A, chloroplastic OS=Cucurbita maxima OX=3661 GN...	[more]
A0A6J1G8H2	3.7e-88	81.06	probable ribosome-binding factor A, chloroplastic OS=Cucurbita moschata OX=3662 ...	[more]
A0A0A0LIX7	6.5e-85	82.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G252090 PE=3 SV=1	[more]
A0A1S4E1P3	7.2e-84	80.26	probable ribosome-binding factor A, chloroplastic OS=Cucumis melo OX=3656 GN=LOC...	[more]

BLAST of MS020589 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G34730.1	5.1e-66	65.92	ribosome-binding factor A family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000238	Ribosome-binding factor A	TIGRFAM	TIGR00082	TIGR00082	coord: 58..185 e-value: 1.3E-23 score: 81.7
IPR000238	Ribosome-binding factor A	PFAM	PF02033	RBFA	coord: 63..180 e-value: 2.2E-27 score: 95.6
IPR000238	Ribosome-binding factor A	PANTHER	PTHR33515	RIBOSOME-BINDING FACTOR A, CHLOROPLASTIC-RELATED	coord: 52..218
IPR000238	Ribosome-binding factor A	HAMAP	MF_00003	RbfA	coord: 62..180 score: 21.987164
IPR015946	K homology domain-like, alpha/beta	GENE3D	3.30.300.20		coord: 58..174 e-value: 3.9E-35 score: 122.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 188..203
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 204..218
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 188..218
IPR020053	Ribosome-binding factor A, conserved site	PROSITE	PS01319	RBFA	coord: 146..167
IPR023799	Ribosome-binding factor A domain superfamily	SUPERFAMILY	89919	Ribosome-binding factor A, RbfA	coord: 58..183

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS020589.1	MS020589.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006364	rRNA processing