MS020535 (gene) Bitter gourd (TR) v1

Overview


Name	MS020535
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Encodes a protein of unknown function that is a marker for oxidative stress response.
Location	scaffold375: 984925 .. 985346 (-)
RNA-Seq Expression	MS020535
Synteny	MS020535

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGAAAGCCCAAAATGAAAAACTGTCAGCTGCAGGTGCTCCAAATCCAGCACCCATGGCTTCTTGTCGAAAGAAGAAGAATGATGACGCTACTTTCCTGGAGGATTTGAAGGATCACATCGACGAGTTCATTAATGCATCCATGGACGAACACAAATCGTGCTTCAAGAAGACTATCAACAAGGTTTACTTCCATTGCCCTTTTTGAGCATCTAAAAGAAGTGATCACTTTCTGATATAGATAGTTATAGGGACGAAGTGAAGAGAGGCGGCAATTACCCCCTCTTAGTTTGTTTACAAGTTGATATATTGGGGTTGGTTTGGTTGCAGATGTTCCGAATGTCGAAAGTTGTAGCAGATAGGAACTCAGAGACCACAAATGGAGTTGAAAGTTCTCTTCCTCTTCGAACAACAGTATCAGAA

mRNA sequence

CAGAAAGCCCAAAATGAAAAACTGTCAGCTGCAGGTGCTCCAAATCCAGCACCCATGGCTTCTTGTCGAAAGAAGAAGAATGATGACGCTACTTTCCTGGAGGATTTGAAGGATCACATCGACGAGTTCATTAATGCATCCATGGACGAACACAAATCGTGCTTCAAGAAGACTATCAACAAGATGTTCCGAATGTCGAAAGTTGTAGCAGATAGGAACTCAGAGACCACAAATGGAGTTGAAAGTTCTCTTCCTCTTCGAACAACAGTATCAGAA

Coding sequence (CDS)

CAGAAAGCCCAAAATGAAAAACTGTCAGCTGCAGGTGCTCCAAATCCAGCACCCATGGCTTCTTGTCGAAAGAAGAAGAATGATGACGCTACTTTCCTGGAGGATTTGAAGGATCACATCGACGAGTTCATTAATGCATCCATGGACGAACACAAATCGTGCTTCAAGAAGACTATCAACAAGATGTTCCGAATGTCGAAAGTTGTAGCAGATAGGAACTCAGAGACCACAAATGGAGTTGAAAGTTCTCTTCCTCTTCGAACAACAGTATCAGAA

Protein sequence

QKAQNEKLSAAGAPNPAPMASCRKKKNDDATFLEDLKDHIDEFINASMDEHKSCFKKTINKMFRMSKVVADRNSETTNGVESSLPLRTTVSE

Homology

[Close]

BLAST of MS020535 vs. NCBI nr
Match: XP_022146205.1 (uncharacterized protein LOC111015478 [Momordica charantia])

HSP 1 Score: 178.7 bits (452), Expect = 2.3e-41
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 0


Query: 1  QKAQNEKLSAAGAPNPAPMASCRKKKNDDATFLEDLKDHIDEFINASMDEHKSCFKKTIN 60
          QKAQNEKLSAAGAPNP PMASCRKKKNDDATFLEDLKDHIDEFINASMDEHKSCFKKTIN
Sbjct: 4  QKAQNEKLSAAGAPNPPPMASCRKKKNDDATFLEDLKDHIDEFINASMDEHKSCFKKTIN 63

Query: 61 KMFRMSKVVADRNSETTNGVESSLPLRTTVSE 93
          KMFRMSKVVADRNSETTNGVESSLPLRTTVSE
Sbjct: 64 KMFRMSKVVADRNSETTNGVESSLPLRTTVSE 95

[Close]

BLAST of MS020535 vs. NCBI nr
Match: XP_004148843.1 (uncharacterized protein LOC101211034 [Cucumis sativus] >KGN61795.1 hypothetical protein Csa_006035 [Cucumis sativus])

HSP 1 Score: 140.2 bits (352), Expect = 8.9e-30
Identity = 76/89 (85.39%), Postives = 79/89 (88.76%), Query Frame = 0


Query: 4  QNEKLSAAGAPNPAPMASCRKKKNDDATFLEDLKDHIDEFINASMDEHKSCFKKTINKMF 63
          Q EK S A  P   P+ SCRKKKN++ATFLEDLKDHIDEFINASMDEHKSCFKKTINKMF
Sbjct: 4  QKEKPSTAANP---PIPSCRKKKNEEATFLEDLKDHIDEFINASMDEHKSCFKKTINKMF 63

Query: 64 RMSKVVADRNSETTNGVESSLPLRTTVSE 93
          RMSKVVADRNSE TNGVESSLPLRTTVSE
Sbjct: 64 RMSKVVADRNSE-TNGVESSLPLRTTVSE 88

[Close]

BLAST of MS020535 vs. NCBI nr
Match: XP_008460939.1 (PREDICTED: uncharacterized protein LOC103499674 [Cucumis melo])

HSP 1 Score: 138.3 bits (347), Expect = 3.4e-29
Identity = 75/89 (84.27%), Postives = 79/89 (88.76%), Query Frame = 0


Query: 4  QNEKLSAAGAPNPAPMASCRKKKNDDATFLEDLKDHIDEFINASMDEHKSCFKKTINKMF 63
          Q EK S A  P   P+ SCRKKKN++ATFLEDLKDHIDEFI+ASMDEHKSCFKKTINKMF
Sbjct: 4  QKEKPSTAANP---PIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 63

Query: 64 RMSKVVADRNSETTNGVESSLPLRTTVSE 93
          RMSKVVADRNSE TNGVESSLPLRTTVSE
Sbjct: 64 RMSKVVADRNSE-TNGVESSLPLRTTVSE 88

[Close]

BLAST of MS020535 vs. NCBI nr
Match: KAA0045538.1 (uncharacterized protein E6C27_scaffold243G00290 [Cucumis melo var. makuwa])

HSP 1 Score: 138.3 bits (347), Expect = 3.4e-29
Identity = 75/89 (84.27%), Postives = 79/89 (88.76%), Query Frame = 0


Query: 4   QNEKLSAAGAPNPAPMASCRKKKNDDATFLEDLKDHIDEFINASMDEHKSCFKKTINKMF 63
           Q EK S A  P   P+ SCRKKKN++ATFLEDLKDHIDEFI+ASMDEHKSCFKKTINKMF
Sbjct: 56  QKEKPSTAANP---PIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 115

Query: 64  RMSKVVADRNSETTNGVESSLPLRTTVSE 93
           RMSKVVADRNSE TNGVESSLPLRTTVSE
Sbjct: 116 RMSKVVADRNSE-TNGVESSLPLRTTVSE 140

[Close]

BLAST of MS020535 vs. NCBI nr
Match: XP_022946978.1 (uncharacterized protein LOC111450996 [Cucurbita moschata])

HSP 1 Score: 137.1 bits (344), Expect = 7.6e-29
Identity = 74/89 (83.15%), Postives = 80/89 (89.89%), Query Frame = 0


Query: 4  QNEKLSAAGAPNPAPMASCRKKKNDDATFLEDLKDHIDEFINASMDEHKSCFKKTINKMF 63
          Q EK SAA  P   P+ SCRKKKN++ATFLEDLKDHIDEFI+ASMDEHKSCFKKTINKMF
Sbjct: 4  QKEKPSAAANP---PITSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 63

Query: 64 RMSKVVADRNSETTNGVESSLPLRTTVSE 93
          RMSKVVAD+NSE T+GVESSLPLRTTVSE
Sbjct: 64 RMSKVVADKNSE-TSGVESSLPLRTTVSE 88

[Close]

BLAST of MS020535 vs. ExPASy TrEMBL
Match: A0A6J1CWM9 (uncharacterized protein LOC111015478 OS=Momordica charantia OX=3673 GN=LOC111015478 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.1e-41
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 0


Query: 1  QKAQNEKLSAAGAPNPAPMASCRKKKNDDATFLEDLKDHIDEFINASMDEHKSCFKKTIN 60
          QKAQNEKLSAAGAPNP PMASCRKKKNDDATFLEDLKDHIDEFINASMDEHKSCFKKTIN
Sbjct: 4  QKAQNEKLSAAGAPNPPPMASCRKKKNDDATFLEDLKDHIDEFINASMDEHKSCFKKTIN 63

Query: 61 KMFRMSKVVADRNSETTNGVESSLPLRTTVSE 93
          KMFRMSKVVADRNSETTNGVESSLPLRTTVSE
Sbjct: 64 KMFRMSKVVADRNSETTNGVESSLPLRTTVSE 95

[Close]

BLAST of MS020535 vs. ExPASy TrEMBL
Match: A0A0A0LIQ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G247070 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 4.3e-30
Identity = 76/89 (85.39%), Postives = 79/89 (88.76%), Query Frame = 0


Query: 4  QNEKLSAAGAPNPAPMASCRKKKNDDATFLEDLKDHIDEFINASMDEHKSCFKKTINKMF 63
          Q EK S A  P   P+ SCRKKKN++ATFLEDLKDHIDEFINASMDEHKSCFKKTINKMF
Sbjct: 4  QKEKPSTAANP---PIPSCRKKKNEEATFLEDLKDHIDEFINASMDEHKSCFKKTINKMF 63

Query: 64 RMSKVVADRNSETTNGVESSLPLRTTVSE 93
          RMSKVVADRNSE TNGVESSLPLRTTVSE
Sbjct: 64 RMSKVVADRNSE-TNGVESSLPLRTTVSE 88

[Close]

BLAST of MS020535 vs. ExPASy TrEMBL
Match: A0A5A7TRS7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G00290 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.6e-29
Identity = 75/89 (84.27%), Postives = 79/89 (88.76%), Query Frame = 0


Query: 4   QNEKLSAAGAPNPAPMASCRKKKNDDATFLEDLKDHIDEFINASMDEHKSCFKKTINKMF 63
           Q EK S A  P   P+ SCRKKKN++ATFLEDLKDHIDEFI+ASMDEHKSCFKKTINKMF
Sbjct: 56  QKEKPSTAANP---PIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 115

Query: 64  RMSKVVADRNSETTNGVESSLPLRTTVSE 93
           RMSKVVADRNSE TNGVESSLPLRTTVSE
Sbjct: 116 RMSKVVADRNSE-TNGVESSLPLRTTVSE 140

[Close]

BLAST of MS020535 vs. ExPASy TrEMBL
Match: A0A1S3CDL9 (uncharacterized protein LOC103499674 OS=Cucumis melo OX=3656 GN=LOC103499674 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.6e-29
Identity = 75/89 (84.27%), Postives = 79/89 (88.76%), Query Frame = 0


Query: 4  QNEKLSAAGAPNPAPMASCRKKKNDDATFLEDLKDHIDEFINASMDEHKSCFKKTINKMF 63
          Q EK S A  P   P+ SCRKKKN++ATFLEDLKDHIDEFI+ASMDEHKSCFKKTINKMF
Sbjct: 4  QKEKPSTAANP---PIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 63

Query: 64 RMSKVVADRNSETTNGVESSLPLRTTVSE 93
          RMSKVVADRNSE TNGVESSLPLRTTVSE
Sbjct: 64 RMSKVVADRNSE-TNGVESSLPLRTTVSE 88

[Close]

BLAST of MS020535 vs. ExPASy TrEMBL
Match: A0A6J1G5B9 (uncharacterized protein LOC111450996 OS=Cucurbita moschata OX=3662 GN=LOC111450996 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.7e-29
Identity = 74/89 (83.15%), Postives = 80/89 (89.89%), Query Frame = 0


Query: 4  QNEKLSAAGAPNPAPMASCRKKKNDDATFLEDLKDHIDEFINASMDEHKSCFKKTINKMF 63
          Q EK SAA  P   P+ SCRKKKN++ATFLEDLKDHIDEFI+ASMDEHKSCFKKTINKMF
Sbjct: 4  QKEKPSAAANP---PITSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 63

Query: 64 RMSKVVADRNSETTNGVESSLPLRTTVSE 93
          RMSKVVAD+NSE T+GVESSLPLRTTVSE
Sbjct: 64 RMSKVVADKNSE-TSGVESSLPLRTTVSE 88

[Close]

BLAST of MS020535 vs. TAIR 10
Match: AT4G39235.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 109.8 bits (273), Expect = 1.2e-24
Identity = 55/80 (68.75%), Postives = 65/80 (81.25%), Query Frame = 0


Query: 13 APNPAPMASCRKKKNDDATFLEDLKDHIDEFINASMDEHKSCFKKTINKMFRMSKVVADR 72
          +P PA M SCRKK  DDATF ED+KDHID+FI+ASMDEHKSCF+KTI KMF +SK VA++
Sbjct: 8  SPKPA-MTSCRKKVKDDATFFEDVKDHIDDFIHASMDEHKSCFQKTIKKMFGLSKAVAEK 67

Query: 73 NSETTNGVESSLPLRTTVSE 93
           +    GVES LPL+TTVSE
Sbjct: 68 QAVEAKGVESQLPLQTTVSE 86

[Close]

BLAST of MS020535 vs. TAIR 10
Match: AT3G05570.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G39235.1); Has 73 Blast hits to 73 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 108.2 bits (269), Expect = 3.5e-24
Identity = 57/90 (63.33%), Postives = 68/90 (75.56%), Query Frame = 0


Query: 4  QNEKLSAAGAPNPAPMASCRKKKNDDATFLEDLKDHIDEFINASMDEHKSCFKKTINKMF 63
          + +K  A   P PA  +SCRKK  DDA FLED+KDHID+FINASMD+HK+CF KTI KMF
Sbjct: 2  ETQKTQAENPPKPA-TSSCRKKTKDDANFLEDVKDHIDDFINASMDDHKNCFNKTIKKMF 61

Query: 64 RMSKVVADR-NSETTNGVESSLPLRTTVSE 93
           +SK VAD+  SE   GVES LPL+TTVS+
Sbjct: 62 GLSKAVADKQQSEAKGGVESYLPLQTTVSD 90

[Close]

BLAST of MS020535 vs. TAIR 10
Match: AT2G21640.1 (Encodes a protein of unknown function that is a marker for oxidative stress response. )

HSP 1 Score: 77.8 bits (190), Expect = 5.1e-15
Identity = 43/92 (46.74%), Postives = 63/92 (68.48%), Query Frame = 0


Query: 6   EKLSAAGAPNP-APMASCRKK-KNDDATFLEDLKDHIDEFINASMDEHKSCFKKTINKM- 65
           +K+     P P  P +SCRK+ K+D+ATF  +LKDH+DEFI+ASMDEHK+CFK T++K+ 
Sbjct: 13  KKIETENPPKPQVPASSCRKRVKDDNATFFANLKDHMDEFIHASMDEHKTCFKNTMDKIF 72

Query: 66  --FRMSKVVADRNSETTNGVESSLPLRTTVSE 93
             F  ++ VA++  E    VE   PL+T V++
Sbjct: 73  GSFSKAEAVAEKQIEAKEVVEIHSPLQTAVTK 104

The following BLAST results are available for this feature:

BLAST of MS020535 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022146205.1	2.3e-41	98.91	uncharacterized protein LOC111015478 [Momordica charantia]	[more]
XP_004148843.1	8.9e-30	85.39	uncharacterized protein LOC101211034 [Cucumis sativus] >KGN61795.1 hypothetical ...	[more]
XP_008460939.1	3.4e-29	84.27	PREDICTED: uncharacterized protein LOC103499674 [Cucumis melo]	[more]
KAA0045538.1	3.4e-29	84.27	uncharacterized protein E6C27_scaffold243G00290 [Cucumis melo var. makuwa]	[more]
XP_022946978.1	7.6e-29	83.15	uncharacterized protein LOC111450996 [Cucurbita moschata]	[more]

BLAST of MS020535 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS020535 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CWM9	1.1e-41	98.91	uncharacterized protein LOC111015478 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]
A0A0A0LIQ4	4.3e-30	85.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G247070 PE=4 SV=1	[more]
A0A5A7TRS7	1.6e-29	84.27	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3CDL9	1.6e-29	84.27	uncharacterized protein LOC103499674 OS=Cucumis melo OX=3656 GN=LOC103499674 PE=...	[more]
A0A6J1G5B9	3.7e-29	83.15	uncharacterized protein LOC111450996 OS=Cucurbita moschata OX=3662 GN=LOC1114509...	[more]

BLAST of MS020535 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39235.1	1.2e-24	68.75	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G05570.1	3.5e-24	63.33	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G21640.1	5.1e-15	46.74	Encodes a protein of unknown function that is a marker for oxidative stress resp...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..92
None	No IPR available	PANTHER	PTHR33622:SF10	DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPPF	coord: 1..92
None	No IPR available	PANTHER	PTHR33622	FAMILY NOT NAMED	coord: 1..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS020535.1	MS020535.1	mRNA