MS020534 (gene) Bitter gourd (TR) v1

Overview


Name	MS020534
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	glycine-rich RNA-binding protein-like
Location	scaffold375: 974003 .. 974789 (+)
RNA-Seq Expression	MS020534
Synteny	MS020534

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCCACTGATGTTGAGTTTCGTTGCTTCGTGGGTGGCCTTGCCTGGGCCACTGACAGTCAAGCCCTAGAGGAAGCTTTCTCTCCTTATGGCCATATCGTGGAAGCGAAGGTCCGTTTGACGTCGAGATCTGGATTTGTTCCGATTCGGCTTTGTCGATCCTAAATCTGATCTGTGACTCTGTGACTCTGTGACTCTGATCTGTTTTGTGTTACTTTACTGCTCTACGTTCTATGTTACTTTTATTACTCTCCTTTAATCGGTACGTTCACCTTCATCTTGTTTACAGAGACGAAGAACGATCGGTTTTCTTTTTTTTTTTTTCGATTGTGATAACTTTGAAATCTTTGATGTGGTTCTGTGACTGATCTCTGTTTCTATGTGATTTGTGGTTCAGATCGTCAACGACCGTGATACTGGAAGGTCGAGGGGATTTGGATTCGTGACTTTTGCCGATGAGAAGTCCATGAGAAGTGCTATTGAAGGAATGAACGGCCAGAACCTCGATGGCCGTAATATCACCGTCAACGAGGCGCAGGCCAGAGGAGGCGGCGGAGGCGGTGGAGGTGGATACAACCGTGGTGGCGGCGGTGGTGGATACGGCGGTGGACGCCGTGAGGGTGGTTACAACCGTGGTGGCGGTGGCTATGGCGGTGGTGGAGGTGGATACGGAGGAGGTGGTTACGGCGGTGGGCGCCGTGAAGGTGGATACGGCGGTGGTGATGGTGGTTCCCGGTACTCCAGGGGTGGAGGCGGCGGCGGATCTGATGGAGGCTGGAGAAAC

mRNA sequence

ATGGCCGCCACTGATGTTGAGTTTCGTTGCTTCGTGGGTGGCCTTGCCTGGGCCACTGACAGTCAAGCCCTAGAGGAAGCTTTCTCTCCTTATGGCCATATCGTGGAAGCGAAGATCGTCAACGACCGTGATACTGGAAGGTCGAGGGGATTTGGATTCGTGACTTTTGCCGATGAGAAGTCCATGAGAAGTGCTATTGAAGGAATGAACGGCCAGAACCTCGATGGCCGTAATATCACCGTCAACGAGGCGCAGGCCAGAGGAGGCGGCGGAGGCGGTGGAGGTGGATACAACCGTGGTGGCGGCGGTGGTGGATACGGCGGTGGACGCCGTGAGGGTGGTTACAACCGTGGTGGCGGTGGCTATGGCGGTGGTGGAGGTGGATACGGAGGAGGTGGTTACGGCGGTGGGCGCCGTGAAGGTGGATACGGCGGTGGTGATGGTGGTTCCCGGTACTCCAGGGGTGGAGGCGGCGGCGGATCTGATGGAGGCTGGAGAAAC

Coding sequence (CDS)

ATGGCCGCCACTGATGTTGAGTTTCGTTGCTTCGTGGGTGGCCTTGCCTGGGCCACTGACAGTCAAGCCCTAGAGGAAGCTTTCTCTCCTTATGGCCATATCGTGGAAGCGAAGATCGTCAACGACCGTGATACTGGAAGGTCGAGGGGATTTGGATTCGTGACTTTTGCCGATGAGAAGTCCATGAGAAGTGCTATTGAAGGAATGAACGGCCAGAACCTCGATGGCCGTAATATCACCGTCAACGAGGCGCAGGCCAGAGGAGGCGGCGGAGGCGGTGGAGGTGGATACAACCGTGGTGGCGGCGGTGGTGGATACGGCGGTGGACGCCGTGAGGGTGGTTACAACCGTGGTGGCGGTGGCTATGGCGGTGGTGGAGGTGGATACGGAGGAGGTGGTTACGGCGGTGGGCGCCGTGAAGGTGGATACGGCGGTGGTGATGGTGGTTCCCGGTACTCCAGGGGTGGAGGCGGCGGCGGATCTGATGGAGGCTGGAGAAAC

Protein sequence

MAATDVEFRCFVGGLAWATDSQALEEAFSPYGHIVEAKIVNDRDTGRSRGFGFVTFADEKSMRSAIEGMNGQNLDGRNITVNEAQARGGGGGGGGGYNRGGGGGGYGGGRREGGYNRGGGGYGGGGGGYGGGGYGGGRREGGYGGGDGGSRYSRGGGGGGSDGGWRN

Homology

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BLAST of MS020534 vs. NCBI nr
Match: XP_022146146.1 (glycine-rich RNA-binding, abscisic acid-inducible protein-like [Momordica charantia])

HSP 1 Score: 274.6 bits (701), Expect = 5.5e-70
Identity = 165/167 (98.80%), Postives = 166/167 (99.40%), Query Frame = 0


Query: 1   MAATDVEFRCFVGGLAWATDSQALEEAFSPYGHIVEAKIVNDRDTGRSRGFGFVTFADEK 60
           MAA DVEFRCFVGGLAWATDSQALEEAFSPYGHIVEAKIVNDRDTGRSRGFGFVTFADEK
Sbjct: 1   MAAADVEFRCFVGGLAWATDSQALEEAFSPYGHIVEAKIVNDRDTGRSRGFGFVTFADEK 60

Query: 61  SMRSAIEGMNGQNLDGRNITVNEAQARGGGGGGGGGYNRGGGGGGYGGGRREGGYNRGGG 120
           SMRSAIEGMNGQNLDGRNITVNEAQARGGGGGGGGGYNRGGGGGGYGGGRREGGYNRGGG
Sbjct: 61  SMRSAIEGMNGQNLDGRNITVNEAQARGGGGGGGGGYNRGGGGGGYGGGRREGGYNRGGG 120

Query: 121 GYGGGGGGYGGGGYGGGRREGGYGGGDGGSRYSRGGGGGGSDGGWRN 168
           GYGGGGGGYGGGGYGGGRREGGYGGGDGGSRYSRGGGGGGS+GGWRN
Sbjct: 121 GYGGGGGGYGGGGYGGGRREGGYGGGDGGSRYSRGGGGGGSEGGWRN 167

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BLAST of MS020534 vs. NCBI nr
Match: XP_023512522.1 (glycine-rich RNA-binding protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 214.9 bits (546), Expect = 5.2e-52
Identity = 142/171 (83.04%), Postives = 155/171 (90.64%), Query Frame = 0


Query: 1   MAATDVEFRCFVGGLAWATDSQALEEAFSPYGHIVEAKIVNDRDTGRSRGFGFVTFADEK 60
           MA++ VE+RCFVGGLAWATD+ ALE+AFS +G IVEAKIVNDR+TGRSRGFGFVTFA+E+
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFAEEE 60

Query: 61  SMRSAIEGMNGQNLDGRNITVNEAQARGGGGGGGGGYNRGGGGGGYGGGRRE---GGYNR 120
           SMRSAIE MNGQNLDGR+ITVNEAQ R  GGGGGGGYNRGGGGGG  GGRRE   GGYNR
Sbjct: 61  SMRSAIEAMNGQNLDGRSITVNEAQQR--GGGGGGGYNRGGGGGGGYGGRREGGGGGYNR 120

Query: 121 GGGGYGGGGGGYGGGGYGGGRREGGYGGGDGGSRYSR-GGGGGGSDGGWRN 168
           GGGGYGGGGGGYGGGGYGGG R+ GYGGGDGGSRY+R GGGGGGS+GGWRN
Sbjct: 121 GGGGYGGGGGGYGGGGYGGGGRDRGYGGGDGGSRYNRGGGGGGGSEGGWRN 169

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BLAST of MS020534 vs. NCBI nr
Match: XP_038901242.1 (glycine-rich RNA-binding protein-like [Benincasa hispida])

HSP 1 Score: 207.6 bits (527), Expect = 8.3e-50
Identity = 142/172 (82.56%), Postives = 153/172 (88.95%), Query Frame = 0


Query: 1   MAATDVEFRCFVGGLAWATDSQALEEAFSPYGHIVEAKIVNDRDTGRSRGFGFVTFADEK 60
           MA++ VEFRCFVGGLAWATD+ ALE+AFSP+G IVEAKIVNDR+TGRSRGFGFVTFA+E+
Sbjct: 1   MASSSVEFRCFVGGLAWATDNIALEKAFSPFGDIVEAKIVNDRETGRSRGFGFVTFAEEE 60

Query: 61  SMRSAIEGMNGQNLDGRNITVNEAQARGGGGGGGGGYNRGGGGGGYGGGRRE----GGYN 120
           +MRSAIE MNGQNLDGR+ITVNEAQ R GGGGGGGGYNRGGGGGG  GGRRE    GGYN
Sbjct: 61  AMRSAIEAMNGQNLDGRSITVNEAQQR-GGGGGGGGYNRGGGGGGGYGGRREGGGGGGYN 120

Query: 121 RGGGGYGGGGGGYGGGGYGGGR-REGGYGGGDGGSRYSRGGGGGGSDGGWRN 168
           RG GGY  GGGGYGGGGYGGGR R  G GGGDGGSRYSRGGGGGGS+GGWRN
Sbjct: 121 RGSGGY--GGGGYGGGGYGGGRDRSYGGGGGDGGSRYSRGGGGGGSEGGWRN 169

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BLAST of MS020534 vs. NCBI nr
Match: PON84872.1 (Splicing factor-like protein [Trema orientale])

HSP 1 Score: 206.5 bits (524), Expect = 1.8e-49
Identity = 136/173 (78.61%), Postives = 153/173 (88.44%), Query Frame = 0


Query: 1   MAATDVEFRCFVGGLAWATDSQALEEAFSPYGHIVEAKIVNDRDTGRSRGFGFVTFADEK 60
           M + DVE+RCFVGGLAWATDS +LE+AF+ +G IVE+KI+NDR+TGRSRGFGFVTF++EK
Sbjct: 1   MGSADVEYRCFVGGLAWATDSHSLEQAFAQFGEIVESKIINDRETGRSRGFGFVTFSNEK 60

Query: 61  SMRSAIEGMNGQNLDGRNITVNEAQARGGGGGGGGGYNRGGGGGGYGGGRRE----GGYN 120
           +MR AIEGMNGQNLDGRNITVNEAQ+RG GGGGGGGY+RGGGGGGYGGGRRE    GGY+
Sbjct: 61  AMRDAIEGMNGQNLDGRNITVNEAQSRGSGGGGGGGYSRGGGGGGYGGGRREGGGGGGYS 120

Query: 121 RGGGGYGGGGGGYGG-GGYGGGRREGGYGGGDGGSRY-SRGGGGGGSDGGWRN 168
           RGGGGYGGGGGGYGG GGYGGG RE GY  GDGGSRY SRGGGG  ++G WRN
Sbjct: 121 RGGGGYGGGGGGYGGSGGYGGGGRERGY--GDGGSRYSSRGGGGAAAEGNWRN 171

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BLAST of MS020534 vs. NCBI nr
Match: KAG6571119.1 (hypothetical protein SDJN03_30034, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 205.7 bits (522), Expect = 3.1e-49
Identity = 141/174 (81.03%), Postives = 152/174 (87.36%), Query Frame = 0


Query: 1   MAATDVEFRCFVGGLAWATDSQALEEAFSPYGHIVEAKIVNDRDTGRSRGFGFVTFADEK 60
           MA++ VE+RCFVGGLAWATD+ ALE+AFS +G IVEAKIVNDR+TGRSRGFGFVTF +E 
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60

Query: 61  SMRSAIEGMNGQNLDGRNITVNEAQARGGGGGGGGGYNRGGGGGGYG-GGRRE-----GG 120
           SMRSAIE MNGQNLDGR+ITVNEAQ R  GGGGGGGYNRGGGGGG G GGRRE     GG
Sbjct: 61  SMRSAIEAMNGQNLDGRSITVNEAQQR--GGGGGGGYNRGGGGGGGGYGGRREGGGGGGG 120

Query: 121 YNRGGGGYGGGGGGYGGGGYGGGRREGGYGGGDGGSRYSR-GGGGGGSDGGWRN 168
           YNRGGGGYGGGGGGYGGGGYGGGR  G  GGGDGGSRY+R GGGGGGS+GGWRN
Sbjct: 121 YNRGGGGYGGGGGGYGGGGYGGGRDRGYGGGGDGGSRYNRGGGGGGGSEGGWRN 172

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BLAST of MS020534 vs. ExPASy Swiss-Prot
Match: P49310 (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba OX=3728 PE=2 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.6e-40
Identity = 121/173 (69.94%), Postives = 136/173 (78.61%), Query Frame = 0


Query: 1   MAATDVEFRCFVGGLAWATDSQALEEAFSPYGHIVEAKIVNDRDTGRSRGFGFVTFADEK 60
           MA+ DVE+RCFVGGLAWATD +ALE AFS YG ++++KI+NDR+TGRSRGFGFVTF DEK
Sbjct: 1   MASPDVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  SMRSAIEGMNGQNLDGRNITVNEAQARGGGGGG-----------GGGYNRGGGGGGYGGG 120
           SM+ AIEGMNGQ+LDGR+ITVNEAQ+RG GGGG           GGG   GGGGGGYGGG
Sbjct: 61  SMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGGRGGGGGYRSGGGGGYGGGGGGYGGG 120

Query: 121 RREGGYNRGGGGY---GGGGGGYGGGGYGGGRREGGYGGGDGGSRYSRGGGGG 160
            REGGY+ GGGGY   GGGGGGYG    GGGRR+GG GGG GGS    GGGGG
Sbjct: 121 GREGGYSGGGGGYSSRGGGGGGYG----GGGRRDGGEGGGYGGS----GGGGG 165

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BLAST of MS020534 vs. ExPASy Swiss-Prot
Match: Q99070 (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor OX=4558 GN=GRP2 PE=2 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.0e-38
Identity = 117/174 (67.24%), Postives = 137/174 (78.74%), Query Frame = 0


Query: 1   MAATDVEFRCFVGGLAWATDSQALEEAFSPYGHIVEAKIVNDRDTGRSRGFGFVTFADEK 60
           MAA DVE+RCFVGGLAWAT+++ LE+AF+ +G ++++K++ DR+TGRSRGFGFVTF+ E+
Sbjct: 1   MAAADVEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQ 60

Query: 61  SMRSAIEGMNGQNLDGRNITVNEAQARGGGGGGGGGYNRGGGGGGYGGGRREGGYNRGGG 120
           SM  AIE MNG+ LDGRNITVN+AQ+RGGGGGGGG    GGGGGGY GGR  GGY  GGG
Sbjct: 61  SMLDAIENMNGKELDGRNITVNQAQSRGGGGGGGG---YGGGGGGY-GGREGGGYGGGGG 120

Query: 121 GYGG---GGGGYGGGGYGGGRREGGYGGGDGGSRYSRGGGGGG----SDGGWRN 168
           GYGG   GGGGYGGGGYGGG   GGYGG +GG  Y  GGG GG    S G WRN
Sbjct: 121 GYGGRREGGGGYGGGGYGGG--GGGYGGREGGGGYGGGGGYGGNRGDSGGNWRN 168

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BLAST of MS020534 vs. ExPASy Swiss-Prot
Match: P10979 (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays OX=4577 GN=RAB15 PE=1 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.6e-38
Identity = 115/171 (67.25%), Postives = 132/171 (77.19%), Query Frame = 0


Query: 1   MAATDVEFRCFVGGLAWATDSQALEEAFSPYGHIVEAKIVNDRDTGRSRGFGFVTFADEK 60
           MAA DVE+RCFVGGLAWAT +++LE AF+ YG I+++K++ DR+TGRSRGFGFVTF+ E 
Sbjct: 1   MAAADVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSEN 60

Query: 61  SMRSAIEGMNGQNLDGRNITVNEAQARGGGGGGGGGYNRGGGGGGYGGGRREGGYNRGGG 120
           SM  AIE MNG+ LDGRNITVN+AQ+R GGGGGGGGY  G GGGGYGGGRR+GGY  GGG
Sbjct: 61  SMLDAIENMNGKELDGRNITVNQAQSR-GGGGGGGGYGGGRGGGGYGGGRRDGGYG-GGG 120

Query: 121 GYG----GGGGGYGGGGYGGGRREGGYGGGDGGSRYSRGGGGGGSDGGWRN 168
           GYG    GGGGGYGGGG  GGRREGG            GGG GG  GGWR+
Sbjct: 121 GYGGRREGGGGGYGGGGGYGGRREGG------------GGGYGGGGGGWRD 157

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BLAST of MS020534 vs. ExPASy Swiss-Prot
Match: P49311 (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba OX=3728 PE=2 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 7.6e-38
Identity = 123/178 (69.10%), Postives = 139/178 (78.09%), Query Frame = 0


Query: 1   MAATDVEFRCFVGGLAWATDSQALEEAFSPYGHIVEAKIVNDRDTGRSRGFGFVTFADEK 60
           MA+ DVE+RCFVGGLAWATD ++LE AFS +G +V++KI+NDR+TGRSRGFGFVTF DEK
Sbjct: 1   MASPDVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  SMRSAIEGMNGQNLDGRNITVNEAQAR-----GGGGGGGGGY----NRGGGGGGYGGGRR 120
           SM+ AIEGMNGQ+LDGR+ITVNEAQ+R     GGG GGGGGY      GGGGGGYGGGRR
Sbjct: 61  SMKDAIEGMNGQDLDGRSITVNEAQSRGSGAGGGGRGGGGGYRGGGGYGGGGGGYGGGRR 120

Query: 121 E-GGYNRGGGGY---GGGGGGYGGGGYGGGRREGGYGGGDGGSRYSRGGGGGGSDGGW 166
           E GGY+ GGGGY   GGGGGGYGGGG   G   GGYGGG+G      GG GGG  GGW
Sbjct: 121 EGGGYSGGGGGYSSRGGGGGGYGGGGRRDG---GGYGGGEG------GGYGGGGGGGW 169

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BLAST of MS020534 vs. ExPASy Swiss-Prot
Match: Q03878 (Glycine-rich RNA-binding protein OS=Daucus carota OX=4039 PE=2 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 9.9e-38
Identity = 117/161 (72.67%), Postives = 130/161 (80.75%), Query Frame = 0


Query: 5   DVEFRCFVGGLAWATDSQALEEAFSPYGHIVEAKIVNDRDTGRSRGFGFVTFADEKSMRS 64
           +VE+RCFVGGLAWAT+ ++LE+AFS +G I ++KI+NDR+TGRSRGFGFVTF DEKSMR 
Sbjct: 3   EVEYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRD 62

Query: 65  AIEGMNGQNLDGRNITVNEAQARGGGGGGGGGYNRGGGGGGYG-----GGRREGGYNRGG 124
           AIEGMNGQ LDGRNITVNEAQ+RG GGGGG    R GGGGGYG     GGRREGG   GG
Sbjct: 63  AIEGMNGQELDGRNITVNEAQSRGSGGGGG---RREGGGGGYGGGGGYGGRREGG---GG 122

Query: 125 GGYG----GGGGGYGGGGYG-GGRRE---GGYGGGDGGSRY 153
           GGYG    GGGGGYGGGG G GGRRE   GGYGGG GGSR+
Sbjct: 123 GGYGGRREGGGGGYGGGGGGYGGRREGGDGGYGGGGGGSRW 157

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BLAST of MS020534 vs. ExPASy TrEMBL
Match: A0A6J1CYG2 (glycine-rich RNA-binding, abscisic acid-inducible protein-like OS=Momordica charantia OX=3673 GN=LOC111015433 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 2.7e-70
Identity = 165/167 (98.80%), Postives = 166/167 (99.40%), Query Frame = 0


Query: 1   MAATDVEFRCFVGGLAWATDSQALEEAFSPYGHIVEAKIVNDRDTGRSRGFGFVTFADEK 60
           MAA DVEFRCFVGGLAWATDSQALEEAFSPYGHIVEAKIVNDRDTGRSRGFGFVTFADEK
Sbjct: 1   MAAADVEFRCFVGGLAWATDSQALEEAFSPYGHIVEAKIVNDRDTGRSRGFGFVTFADEK 60

Query: 61  SMRSAIEGMNGQNLDGRNITVNEAQARGGGGGGGGGYNRGGGGGGYGGGRREGGYNRGGG 120
           SMRSAIEGMNGQNLDGRNITVNEAQARGGGGGGGGGYNRGGGGGGYGGGRREGGYNRGGG
Sbjct: 61  SMRSAIEGMNGQNLDGRNITVNEAQARGGGGGGGGGYNRGGGGGGYGGGRREGGYNRGGG 120

Query: 121 GYGGGGGGYGGGGYGGGRREGGYGGGDGGSRYSRGGGGGGSDGGWRN 168
           GYGGGGGGYGGGGYGGGRREGGYGGGDGGSRYSRGGGGGGS+GGWRN
Sbjct: 121 GYGGGGGGYGGGGYGGGRREGGYGGGDGGSRYSRGGGGGGSEGGWRN 167

[Close]

BLAST of MS020534 vs. ExPASy TrEMBL
Match: A0A2P5EH69 (Splicing factor-like protein OS=Trema orientale OX=63057 GN=TorRG33x02_192700 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 8.9e-50
Identity = 136/173 (78.61%), Postives = 153/173 (88.44%), Query Frame = 0


Query: 1   MAATDVEFRCFVGGLAWATDSQALEEAFSPYGHIVEAKIVNDRDTGRSRGFGFVTFADEK 60
           M + DVE+RCFVGGLAWATDS +LE+AF+ +G IVE+KI+NDR+TGRSRGFGFVTF++EK
Sbjct: 1   MGSADVEYRCFVGGLAWATDSHSLEQAFAQFGEIVESKIINDRETGRSRGFGFVTFSNEK 60

Query: 61  SMRSAIEGMNGQNLDGRNITVNEAQARGGGGGGGGGYNRGGGGGGYGGGRRE----GGYN 120
           +MR AIEGMNGQNLDGRNITVNEAQ+RG GGGGGGGY+RGGGGGGYGGGRRE    GGY+
Sbjct: 61  AMRDAIEGMNGQNLDGRNITVNEAQSRGSGGGGGGGYSRGGGGGGYGGGRREGGGGGGYS 120

Query: 121 RGGGGYGGGGGGYGG-GGYGGGRREGGYGGGDGGSRY-SRGGGGGGSDGGWRN 168
           RGGGGYGGGGGGYGG GGYGGG RE GY  GDGGSRY SRGGGG  ++G WRN
Sbjct: 121 RGGGGYGGGGGGYGGSGGYGGGGRERGY--GDGGSRYSSRGGGGAAAEGNWRN 171

[Close]

BLAST of MS020534 vs. ExPASy TrEMBL
Match: A0A6J1FRL7 (glycine-rich RNA-binding protein-like OS=Cucurbita moschata OX=3662 GN=LOC111448177 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 2.0e-49
Identity = 141/175 (80.57%), Postives = 152/175 (86.86%), Query Frame = 0


Query: 1   MAATDVEFRCFVGGLAWATDSQALEEAFSPYGHIVEAKIVNDRDTGRSRGFGFVTFADEK 60
           MA++ VE+RCFVGGLAWATD+ ALE+AFS +G IVEAKIVNDR+TGRSRGFGFVTF +E 
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60

Query: 61  SMRSAIEGMNGQNLDGRNITVNEAQARGGGGGGGGGYNRGGGGGGYG-GGRRE----GGY 120
           SMRSAIE MNGQNLDGR+ITVNEAQ R  GGGGGGGYNRGGGGGG G GGRRE    GGY
Sbjct: 61  SMRSAIEAMNGQNLDGRSITVNEAQQR--GGGGGGGYNRGGGGGGGGYGGRREGGGGGGY 120

Query: 121 NRGGGGYGGGGGGYGGGGYGGGRREGGYGGGDGGSRYSR---GGGGGGSDGGWRN 168
           NRGGGGYGGGGGGYGGGGYGGGR  G  GGGDGGSRY+R   GGGGGGS+GGWRN
Sbjct: 121 NRGGGGYGGGGGGYGGGGYGGGRDRGYGGGGDGGSRYNRGGGGGGGGGSEGGWRN 173

[Close]

BLAST of MS020534 vs. ExPASy TrEMBL
Match: A0A6J1L652 (glycine-rich RNA-binding protein 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111499534 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 7.6e-49
Identity = 139/174 (79.89%), Postives = 151/174 (86.78%), Query Frame = 0


Query: 1   MAATDVEFRCFVGGLAWATDSQALEEAFSPYGHIVEAKIVNDRDTGRSRGFGFVTFADEK 60
           MA++ VE+RCFVGGLAWATD+ ALE+AFS +G IVEAKIVNDR+TGRSRGFGFVTF DE+
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60

Query: 61  SMRSAIEGMNGQNLDGRNITVNEAQARGGGGGGGGGYNRGGGGGGYGGGRRE----GGYN 120
           +MRSAIE MNGQNLDGR+ITVNEAQ RGGGGGGGGGYNRGGGGGG  GGRRE    GGYN
Sbjct: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGGYNRGGGGGGGYGGRREGGGGGGYN 120

Query: 121 RGGGGYGGGGGGYGGGGYGGGRREGGYGGGDG--GSRYSR-GGGGGGSDGGWRN 168
           RGGGGYGGGGGGYGGGG  GG R+ GYGGG G  G RY R GGGGGGS+GGWRN
Sbjct: 121 RGGGGYGGGGGGYGGGGGYGGGRDRGYGGGGGGDGGRYQRGGGGGGGSEGGWRN 174

[Close]

BLAST of MS020534 vs. ExPASy TrEMBL
Match: A0A6J1G631 (glycine-rich RNA-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111451139 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 2.2e-48
Identity = 138/172 (80.23%), Postives = 149/172 (86.63%), Query Frame = 0


Query: 1   MAATDVEFRCFVGGLAWATDSQALEEAFSPYGHIVEAKIVNDRDTGRSRGFGFVTFADEK 60
           MA++ VE+RCFVGGLAWATD+ ALE+AFS +G IVEAKIVNDR+TGRSRGFGFVTF DE+
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60

Query: 61  SMRSAIEGMNGQNLDGRNITVNEAQARGGGGGGGGGYNRGGGGGGYGGGRRE---GGYNR 120
           +MRSAIE MNGQNLDGR+ITVNEAQ R GGGGGGGGYNRGGGGGG  GGRRE   GGYNR
Sbjct: 61  AMRSAIEAMNGQNLDGRSITVNEAQQR-GGGGGGGGYNRGGGGGGGYGGRREGGGGGYNR 120

Query: 121 GGGGYGGGGGGYGGGGYGGGRRE--GGYGGGDGGSRYSRGGGGGGSDGGWRN 168
           GGGGYGGGGGGYGGGGYGGGR    GG GGGDGG     GGGGGGS+GGWRN
Sbjct: 121 GGGGYGGGGGGYGGGGYGGGRDRGYGGGGGGDGGRYQRGGGGGGGSEGGWRN 171

[Close]

BLAST of MS020534 vs. TAIR 10
Match: AT2G21660.2 (cold, circadian rhythm, and rna binding 2 )

HSP 1 Score: 158.7 bits (400), Expect = 4.1e-39
Identity = 118/172 (68.60%), Postives = 135/172 (78.49%), Query Frame = 0


Query: 1   MAATDVEFRCFVGGLAWATDSQALEEAFSPYGHIVEAKIVNDRDTGRSRGFGFVTFADEK 60
           MA+ DVE+RCFVGGLAWATD +ALE AF+ YG ++++KI+NDR+TGRSRGFGFVTF DEK
Sbjct: 1   MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  SMRSAIEGMNGQNLDGRNITVNEAQARGGGGGGGGGYNRGGGGGGYGGGRREGGYNRGGG 120
           +M+ AIEGMNGQ+LDGR+ITVNEAQ+RG GGGGG   +RGGG  G GGGRRE     GGG
Sbjct: 61  AMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGG---HRGGGSYGGGGGRRE-----GGG 120

Query: 121 GYGGGGGGY-----GGGGYGGGRRE--GGYGGGDGGSRYSRGGGGGGSDGGW 166
           GY GGGGGY     GGG YGGGRRE  GGYGGG+GG     G GG G  GGW
Sbjct: 121 GYSGGGGGYSSRGGGGGSYGGGRREGGGGYGGGEGG-----GYGGSGGGGGW 159

[Close]

BLAST of MS020534 vs. TAIR 10
Match: AT2G21660.1 (cold, circadian rhythm, and rna binding 2 )

HSP 1 Score: 156.0 bits (393), Expect = 2.7e-38
Identity = 120/181 (66.30%), Postives = 136/181 (75.14%), Query Frame = 0


Query: 1   MAATDVEFRCFVGGLAWATDSQALEEAFSPYGHIVEAKIVNDRDTGRSRGFGFVTFADEK 60
           MA+ DVE+RCFVGGLAWATD +ALE AF+ YG ++++KI+NDR+TGRSRGFGFVTF DEK
Sbjct: 1   MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  SMRSAIEGMNGQNLDGRNITVNEAQARGGGG-----GGGGGYNRGGGGGGYGGGRRE--- 120
           +M+ AIEGMNGQ+LDGR+ITVNEAQ+RG GG     GGGGG  R GGGGGY GG      
Sbjct: 61  AMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGHRGGGGGGYRSGGGGGYSGGGGSYGG 120

Query: 121 -GGYNRGGGGYGGGGGGY-----GGGGYGGGRRE--GGYGGGDGGSRYSRGGGGGGSDGG 166
            GG   GGGGY GGGGGY     GGG YGGGRRE  GGYGGG+GG     G GG G  GG
Sbjct: 121 GGGRREGGGGYSGGGGGYSSRGGGGGSYGGGRREGGGGYGGGEGG-----GYGGSGGGGG 176

[Close]

BLAST of MS020534 vs. TAIR 10
Match: AT4G39260.1 (cold, circadian rhythm, and RNA binding 1 )

HSP 1 Score: 134.8 bits (338), Expect = 6.4e-32
Identity = 110/171 (64.33%), Postives = 127/171 (74.27%), Query Frame = 0


Query: 4   TDVEFRCFVGGLAWATDSQALEEAFSPYGHIVEAKIVNDRDTGRSRGFGFVTFADEKSMR 63
           ++VE+RCFVGGLAWAT+ + L+  FS +G ++++KI+NDR++GRSRGFGFVTF DEK+MR
Sbjct: 2   SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61

Query: 64  SAIEGMNGQNLDGRNITVNEAQARGGGGGG------GGGYN-------RGGGGGGYGGGR 123
            AIE MNG+ LDGR ITVNEAQ+RG GGGG      GGGY         GGGGGGY GG 
Sbjct: 62  DAIEEMNGKELDGRVITVNEAQSRGSGGGGGGRGGSGGGYRSGGGGGYSGGGGGGYSGG- 121

Query: 124 REGGYNRGGGGYGGGGGGYGGGGYGGGRRE-GGYGGGDGGSRYSRGGGGGG 161
             GGY R  GGYG GGGG G G  GGGRRE GGYGGGDGG   S GGGGGG
Sbjct: 122 GGGGYERRSGGYGSGGGGGGRGYGGGGRREGGGYGGGDGG---SYGGGGGG 168

[Close]

BLAST of MS020534 vs. TAIR 10
Match: AT4G39260.2 (cold, circadian rhythm, and RNA binding 1 )

HSP 1 Score: 128.6 bits (322), Expect = 4.6e-30
Identity = 89/135 (65.93%), Postives = 106/135 (78.52%), Query Frame = 0


Query: 4   TDVEFRCFVGGLAWATDSQALEEAFSPYGHIVEAKIVNDRDTGRSRGFGFVTFADEKSMR 63
           ++VE+RCFVGGLAWAT+ + L+  FS +G ++++KI+NDR++GRSRGFGFVTF DEK+MR
Sbjct: 2   SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61

Query: 64  SAIEGMNGQNLDGRNITVNEAQARGGGGGGGGGYNRGGGGGGYGGGRREGGYNRGGGGY- 123
            AIE MNG+ LDGR ITVNEAQ+RG GGGGGG   RGG GGGY  G        GGGGY 
Sbjct: 62  DAIEEMNGKELDGRVITVNEAQSRGSGGGGGG---RGGSGGGYRSG--------GGGGYS 121

Query: 124 GGGGGGYGGGGYGGG 138
           GGGGGGY GGG GGG
Sbjct: 122 GGGGGGYSGGGGGGG 125

[Close]

BLAST of MS020534 vs. TAIR 10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3 )

HSP 1 Score: 84.7 bits (208), Expect = 7.5e-17
Identity = 90/170 (52.94%), Postives = 112/170 (65.88%), Query Frame = 0


Query: 9   RCFVGGLAWATDSQALEEAFSPYGHIVEAKIVNDRDTGRSRGFGFVTFADEKSMRSAIEG 68
           + F+GG+A++ D  +L EAF+ YG +V+ +++ DR+TGRSRGFGFVTF   ++  SAI+ 
Sbjct: 41  KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100

Query: 69  MNGQNLDGRNITVNEAQARGGGGG-GGGGYNRGGGG----GGYGGGRREGGYNRGGGGYG 128
           ++G++L GR + VN A  R  GGG GGGGY  GGGG    GGYGGG   GGY  G GGYG
Sbjct: 101 LDGRDLHGRVVKVNYANDRTSGGGFGGGGYGGGGGGYGGSGGYGGG--AGGYG-GSGGYG 160

Query: 129 GGGGGYGG--GGYGGGRREGGYG----GGDGGSRYSRGGGGG--GSDGGW 166
           GG GGYGG  GG  GG   GGYG    GG GG     GG GG  GS GG+
Sbjct: 161 GGAGGYGGNSGGGYGGNAAGGYGGSGAGGYGGDATGHGGAGGGYGSSGGF 207

The following BLAST results are available for this feature:

BLAST of MS020534 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022146146.1	5.5e-70	98.80	glycine-rich RNA-binding, abscisic acid-inducible protein-like [Momordica charan...	[more]
XP_023512522.1	5.2e-52	83.04	glycine-rich RNA-binding protein 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_038901242.1	8.3e-50	82.56	glycine-rich RNA-binding protein-like [Benincasa hispida]	[more]
PON84872.1	1.8e-49	78.61	Splicing factor-like protein [Trema orientale]	[more]
KAG6571119.1	3.1e-49	81.03	hypothetical protein SDJN03_30034, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of MS020534 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49310	1.6e-40	69.94	Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba OX=3728 PE=2 SV=1	[more]
Q99070	2.0e-38	67.24	Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor OX=4558 GN=GRP2 PE=2 SV=1	[more]
P10979	2.6e-38	67.25	Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays OX=4577 GN...	[more]
P49311	7.6e-38	69.10	Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba OX=3728 PE=2 SV=1	[more]
Q03878	9.9e-38	72.67	Glycine-rich RNA-binding protein OS=Daucus carota OX=4039 PE=2 SV=1	[more]

BLAST of MS020534 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CYG2	2.7e-70	98.80	glycine-rich RNA-binding, abscisic acid-inducible protein-like OS=Momordica char...	[more]
A0A2P5EH69	8.9e-50	78.61	Splicing factor-like protein OS=Trema orientale OX=63057 GN=TorRG33x02_192700 PE...	[more]
A0A6J1FRL7	2.0e-49	80.57	glycine-rich RNA-binding protein-like OS=Cucurbita moschata OX=3662 GN=LOC111448...	[more]
A0A6J1L652	7.6e-49	79.89	glycine-rich RNA-binding protein 1-like isoform X1 OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1G631	2.2e-48	80.23	glycine-rich RNA-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]

BLAST of MS020534 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21660.2	4.1e-39	68.60	cold, circadian rhythm, and rna binding 2	[more]
AT2G21660.1	2.7e-38	66.30	cold, circadian rhythm, and rna binding 2	[more]
AT4G39260.1	6.4e-32	64.33	cold, circadian rhythm, and RNA binding 1	[more]
AT4G39260.2	4.6e-30	65.93	cold, circadian rhythm, and RNA binding 1	[more]
AT5G61030.1	7.5e-17	52.94	glycine-rich RNA-binding protein 3	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 9..82 e-value: 4.0E-29 score: 112.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 11..79 e-value: 1.5E-23 score: 82.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 8..86 score: 19.501883
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..107 e-value: 3.5E-31 score: 110.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 120..167
None	No IPR available	PANTHER	PTHR48024:SF22	RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED	coord: 1..167
None	No IPR available	PANTHER	PTHR48024	GEO13361P1-RELATED	coord: 1..167
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 8..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS020534.1	MS020534.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding