MS020448 (gene) Bitter gourd (TR) v1

Overview
NameMS020448
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionbinding partner of ACD11 1-like
Locationscaffold375: 254469 .. 256036 (-)
RNA-Seq ExpressionMS020448
SyntenyMS020448
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CAGATGGTCAGAACGGTGAGAGTTGCCAATGTCTCCTTAAGCGCGACGGAGAAAGATTTGAGAGACTTTTTTTCTTTCTCCGGTGAGATTGAATTTGTCGAAATGCGAAAGTAAGTGTGGTTTACTAGTGCCTCAAAATTGTATTTCTGCTGTTTTTTAGTTCGAATGGGAACTGTCATTATCAGAGGATTTTTTTTTTCTTTCCTTCATTTTGTTCTCCAATTGTTTGTCCATATGCATCTTCATTTACTACGTTTTATTTTATTGTAGGGACAGCGAGCGATCTCAAGTTGCATTTGTTACCTTTAAGGATTCGAAAGGGGCAGAGACATCGATTCTACTCTCGGTTGATACAATTTTTTCTTCTTATTATTCTCTTTATTTATTTCAATTGTTCTTCTTCTTAGTTTGTATATCTTCTAAATAATTTTATTGGAATATGTACTTATTTACTGTATTCTGCAATGCATCCATCTTGGGACCATAAATAGTTTCCTTTGAACTTACATTAGAAAATGTTTCCTGAAAAGTAGAAATTTTCTTCTCTTACGAAAAGATGGCTCTAAGGTGTAACGTGTTTTGAAAATTACTTAGAGCGGAGTTTCATTCTTCAAAAAGTTCCTCAAGAAATGCAACCACCTTCTGATCCAATAGAGGAGATTTAACAAGTTTTCATGCATTTACTTCTTTAACATGGTCATGGGAAGAAATTATTCAATATGTTCGTCATAATGTGCTGTCACTTTTATAGCTGCCAGAGGCATGGATAAAAAAAAATTCTTCTTAATTTCTTTCTCATACATCTAATATATTACTCTTTCTTGATTCAATAATTTCTCGGCCAGTAGAGAGATTGCGTCGCTGTGTTAATTTTCCAGAGTAATGTTCGTCTGTTATCTTACCTGATTAATCTATGCTGCGTTTCTCAGGGAGCTACAATTGTTGATCAGCCTGTTAGCATCACTTCTGATCCGGATTACAACCTACCTGCTGCTGCTGCCAAATCCCCTCCAATGGTGTCTACTCCTGTATGTTCAATCTTACCCTTACAGTATTTTCAATCTTGTTTCTCCAATTTCTGACATGAATAAATAAACATGCTTCACCAGATTACAGAGAACACAGGCTCTGCTACTACTGGATCTGCAATGGAAAAGGCAGAAGATGTAGTTAGCAGCATGCTTGCCAAAGGCTTCAGTTTGGGCAAAGATGCCCTCAATAAGGCAAAGTCTTTTGACGAGAGGCACCAGTTGACATCGACAGCCTCATTCAAAGTGGCTTCTCTGGACCAAAAAATCGGTCTTAGCGAGAAAATTAGCGTTGGCACAACAGTGGTGAATGAGCAAGTGAGAAAAATGGATGAGAAGTTTCAAGTGTCTGAGAAGACCAAGGCAGCCGTGAGCACTGCAGGATCAGCGATAATGACTAACCGCTATGTCTCAACTGGGGCTTCCTGGGTCACCGAGGTGTTCCAAAGAGTCGCCAAGACAGCTGTAGAAGTTAGCCAGAAAACAAAGGAGAAGGTCGTTTTAGCTGAGGATCAAGGGAAAAATGTGGGAAATTCTCAA

mRNA sequence

CAGATGGTCAGAACGGTGAGAGTTGCCAATGTCTCCTTAAGCGCGACGGAGAAAGATTTGAGAGACTTTTTTTCTTTCTCCGGTGAGATTGAATTTGTCGAAATGCGAAAGGACAGCGAGCGATCTCAAGTTGCATTTGTTACCTTTAAGGATTCGAAAGGGGCAGAGACATCGATTCTACTCTCGGGAGCTACAATTGTTGATCAGCCTGTTAGCATCACTTCTGATCCGGATTACAACCTACCTGCTGCTGCTGCCAAATCCCCTCCAATGGTGTCTACTCCTATTACAGAGAACACAGGCTCTGCTACTACTGGATCTGCAATGGAAAAGGCAGAAGATGTAGTTAGCAGCATGCTTGCCAAAGGCTTCAGTTTGGGCAAAGATGCCCTCAATAAGGCAAAGTCTTTTGACGAGAGGCACCAGTTGACATCGACAGCCTCATTCAAAGTGGCTTCTCTGGACCAAAAAATCGGTCTTAGCGAGAAAATTAGCGTTGGCACAACAGTGGTGAATGAGCAAGTGAGAAAAATGGATGAGAAGTTTCAAGTGTCTGAGAAGACCAAGGCAGCCGTGAGCACTGCAGGATCAGCGATAATGACTAACCGCTATGTCTCAACTGGGGCTTCCTGGGTCACCGAGGTGTTCCAAAGAGTCGCCAAGACAGCTGTAGAAGTTAGCCAGAAAACAAAGGAGAAGGTCGTTTTAGCTGAGGATCAAGGGAAAAATGTGGGAAATTCTCAA

Coding sequence (CDS)

CAGATGGTCAGAACGGTGAGAGTTGCCAATGTCTCCTTAAGCGCGACGGAGAAAGATTTGAGAGACTTTTTTTCTTTCTCCGGTGAGATTGAATTTGTCGAAATGCGAAAGGACAGCGAGCGATCTCAAGTTGCATTTGTTACCTTTAAGGATTCGAAAGGGGCAGAGACATCGATTCTACTCTCGGGAGCTACAATTGTTGATCAGCCTGTTAGCATCACTTCTGATCCGGATTACAACCTACCTGCTGCTGCTGCCAAATCCCCTCCAATGGTGTCTACTCCTATTACAGAGAACACAGGCTCTGCTACTACTGGATCTGCAATGGAAAAGGCAGAAGATGTAGTTAGCAGCATGCTTGCCAAAGGCTTCAGTTTGGGCAAAGATGCCCTCAATAAGGCAAAGTCTTTTGACGAGAGGCACCAGTTGACATCGACAGCCTCATTCAAAGTGGCTTCTCTGGACCAAAAAATCGGTCTTAGCGAGAAAATTAGCGTTGGCACAACAGTGGTGAATGAGCAAGTGAGAAAAATGGATGAGAAGTTTCAAGTGTCTGAGAAGACCAAGGCAGCCGTGAGCACTGCAGGATCAGCGATAATGACTAACCGCTATGTCTCAACTGGGGCTTCCTGGGTCACCGAGGTGTTCCAAAGAGTCGCCAAGACAGCTGTAGAAGTTAGCCAGAAAACAAAGGAGAAGGTCGTTTTAGCTGAGGATCAAGGGAAAAATGTGGGAAATTCTCAA

Protein sequence

QMVRTVRVANVSLSATEKDLRDFFSFSGEIEFVEMRKDSERSQVAFVTFKDSKGAETSILLSGATIVDQPVSITSDPDYNLPAAAAKSPPMVSTPITENTGSATTGSAMEKAEDVVSSMLAKGFSLGKDALNKAKSFDERHQLTSTASFKVASLDQKIGLSEKISVGTTVVNEQVRKMDEKFQVSEKTKAAVSTAGSAIMTNRYVSTGASWVTEVFQRVAKTAVEVSQKTKEKVVLAEDQGKNVGNSQ
Homology
BLAST of MS020448 vs. NCBI nr
Match: XP_022148663.1 (binding partner of ACD11 1-like isoform X1 [Momordica charantia])

HSP 1 Score: 449.9 bits (1156), Expect = 1.4e-122
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 0

Query: 2   MVRTVRVANVSLSATEKDLRDFFSFSGEIEFVEMRKDSERSQVAFVTFKDSKGAETSILL 61
           MVRTVRVANVSLSATEKDLRDFFSFSGEIEFVEMRKDSERSQVAFVTFKDSKGAETSILL
Sbjct: 5   MVRTVRVANVSLSATEKDLRDFFSFSGEIEFVEMRKDSERSQVAFVTFKDSKGAETSILL 64

Query: 62  SGATIVDQPVSITSDPDYNLPAAAAKSPPMVSTPITENTGSATTGSAMEKAEDVVSSMLA 121
           SGATIVDQPVSITSDPDYNLPAAAAKSPPMVSTPITENTGSATTGSAMEKAEDVVSSMLA
Sbjct: 65  SGATIVDQPVSITSDPDYNLPAAAAKSPPMVSTPITENTGSATTGSAMEKAEDVVSSMLA 124

Query: 122 KGFSLGKDALNKAKSFDERHQLTSTASFKVASLDQKIGLSEKISVGTTVVNEQVRKMDEK 181
           KGFSLGKDALNKAKSFDERHQLTSTASFKVASLDQKIGLSEKISVGTTVVNEQVRKMDEK
Sbjct: 125 KGFSLGKDALNKAKSFDERHQLTSTASFKVASLDQKIGLSEKISVGTTVVNEQVRKMDEK 184

Query: 182 FQVSEKTKAAVSTAGSAIMTNRYVSTGASWVTEVFQRVAKTAVEVSQKTKEKVVLAEDQG 241
           FQVSEKTKAAVSTAGSAIMTNRYVSTGASWVTEVFQRVAKTAVEVSQKTKEKVVLAEDQG
Sbjct: 185 FQVSEKTKAAVSTAGSAIMTNRYVSTGASWVTEVFQRVAKTAVEVSQKTKEKVVLAEDQG 244

Query: 242 KNVGNSQ 249
           KNVGNSQ
Sbjct: 245 KNVGNSQ 251

BLAST of MS020448 vs. NCBI nr
Match: XP_022148664.1 (binding partner of ACD11 1-like isoform X2 [Momordica charantia])

HSP 1 Score: 449.9 bits (1156), Expect = 1.4e-122
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 0

Query: 2   MVRTVRVANVSLSATEKDLRDFFSFSGEIEFVEMRKDSERSQVAFVTFKDSKGAETSILL 61
           MVRTVRVANVSLSATEKDLRDFFSFSGEIEFVEMRKDSERSQVAFVTFKDSKGAETSILL
Sbjct: 1   MVRTVRVANVSLSATEKDLRDFFSFSGEIEFVEMRKDSERSQVAFVTFKDSKGAETSILL 60

Query: 62  SGATIVDQPVSITSDPDYNLPAAAAKSPPMVSTPITENTGSATTGSAMEKAEDVVSSMLA 121
           SGATIVDQPVSITSDPDYNLPAAAAKSPPMVSTPITENTGSATTGSAMEKAEDVVSSMLA
Sbjct: 61  SGATIVDQPVSITSDPDYNLPAAAAKSPPMVSTPITENTGSATTGSAMEKAEDVVSSMLA 120

Query: 122 KGFSLGKDALNKAKSFDERHQLTSTASFKVASLDQKIGLSEKISVGTTVVNEQVRKMDEK 181
           KGFSLGKDALNKAKSFDERHQLTSTASFKVASLDQKIGLSEKISVGTTVVNEQVRKMDEK
Sbjct: 121 KGFSLGKDALNKAKSFDERHQLTSTASFKVASLDQKIGLSEKISVGTTVVNEQVRKMDEK 180

Query: 182 FQVSEKTKAAVSTAGSAIMTNRYVSTGASWVTEVFQRVAKTAVEVSQKTKEKVVLAEDQG 241
           FQVSEKTKAAVSTAGSAIMTNRYVSTGASWVTEVFQRVAKTAVEVSQKTKEKVVLAEDQG
Sbjct: 181 FQVSEKTKAAVSTAGSAIMTNRYVSTGASWVTEVFQRVAKTAVEVSQKTKEKVVLAEDQG 240

Query: 242 KNVGNSQ 249
           KNVGNSQ
Sbjct: 241 KNVGNSQ 247

BLAST of MS020448 vs. NCBI nr
Match: XP_038900618.1 (binding partner of ACD11 1-like isoform X2 [Benincasa hispida])

HSP 1 Score: 373.2 bits (957), Expect = 1.7e-99
Identity = 211/249 (84.74%), Postives = 226/249 (90.76%), Query Frame = 0

Query: 3   VRTVRVANVSLSATEKDLRDFFSFSGEIEFVEMRKDSERSQVAFVTFKDSKGAETSILLS 62
           +RTVRV NVSLS TEKDLRDFFSFSGEIEFVEMRKD+ERSQ+AFVTFKD KGAETSILLS
Sbjct: 1   MRTVRVTNVSLSVTEKDLRDFFSFSGEIEFVEMRKDTERSQLAFVTFKDPKGAETSILLS 60

Query: 63  GATIVDQPVSITSDPDYNLPAAAAKSPPM--VSTPITENT--GSATTGSAMEKAEDVVSS 122
           GATIVDQPVSI S PDYNLPA  A +P    VSTP T+NT  G++T GSAM+KAEDVVSS
Sbjct: 61  GATIVDQPVSIASAPDYNLPAVNASAPVAMPVSTPATDNTNSGTSTAGSAMQKAEDVVSS 120

Query: 123 MLAKGFSLGKDALNKAKSFDERHQLTSTASFKVASLDQKIGLSEKISVGTTVVNEQVRKM 182
           MLAKGF+LGKDALNKAKSFDERHQLTSTAS KVASLDQKIGLSEKISVGTTVVNE+VR+M
Sbjct: 121 MLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREM 180

Query: 183 DEKFQVSEKTKAAVSTAGSAIMTNRYVSTGASWVTEVFQRVAKTAVEVSQKTKEKVVLAE 242
           DEKFQVSEKTKAAVS AGSAIMTNRYV TGASWV++ FQRVAK AV+VSQKTKEK VL E
Sbjct: 181 DEKFQVSEKTKAAVSNAGSAIMTNRYVLTGASWVSQTFQRVAKAAVDVSQKTKEK-VLVE 240

Query: 243 DQGKNVGNS 248
           DQGK+VGNS
Sbjct: 241 DQGKHVGNS 248

BLAST of MS020448 vs. NCBI nr
Match: XP_038900617.1 (binding partner of ACD11 1-like isoform X1 [Benincasa hispida])

HSP 1 Score: 373.2 bits (957), Expect = 1.7e-99
Identity = 211/249 (84.74%), Postives = 226/249 (90.76%), Query Frame = 0

Query: 3   VRTVRVANVSLSATEKDLRDFFSFSGEIEFVEMRKDSERSQVAFVTFKDSKGAETSILLS 62
           +RTVRV NVSLS TEKDLRDFFSFSGEIEFVEMRKD+ERSQ+AFVTFKD KGAETSILLS
Sbjct: 3   MRTVRVTNVSLSVTEKDLRDFFSFSGEIEFVEMRKDTERSQLAFVTFKDPKGAETSILLS 62

Query: 63  GATIVDQPVSITSDPDYNLPAAAAKSPPM--VSTPITENT--GSATTGSAMEKAEDVVSS 122
           GATIVDQPVSI S PDYNLPA  A +P    VSTP T+NT  G++T GSAM+KAEDVVSS
Sbjct: 63  GATIVDQPVSIASAPDYNLPAVNASAPVAMPVSTPATDNTNSGTSTAGSAMQKAEDVVSS 122

Query: 123 MLAKGFSLGKDALNKAKSFDERHQLTSTASFKVASLDQKIGLSEKISVGTTVVNEQVRKM 182
           MLAKGF+LGKDALNKAKSFDERHQLTSTAS KVASLDQKIGLSEKISVGTTVVNE+VR+M
Sbjct: 123 MLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREM 182

Query: 183 DEKFQVSEKTKAAVSTAGSAIMTNRYVSTGASWVTEVFQRVAKTAVEVSQKTKEKVVLAE 242
           DEKFQVSEKTKAAVS AGSAIMTNRYV TGASWV++ FQRVAK AV+VSQKTKEK VL E
Sbjct: 183 DEKFQVSEKTKAAVSNAGSAIMTNRYVLTGASWVSQTFQRVAKAAVDVSQKTKEK-VLVE 242

Query: 243 DQGKNVGNS 248
           DQGK+VGNS
Sbjct: 243 DQGKHVGNS 250

BLAST of MS020448 vs. NCBI nr
Match: XP_004148092.1 (binding partner of ACD11 1 [Cucumis sativus] >KGN63397.1 hypothetical protein Csa_022121 [Cucumis sativus])

HSP 1 Score: 372.9 bits (956), Expect = 2.2e-99
Identity = 210/249 (84.34%), Postives = 225/249 (90.36%), Query Frame = 0

Query: 4   RTVRVANVSLSATEKDLRDFFSFSGEIEFVEMRKDSERSQVAFVTFKDSKGAETSILLSG 63
           RTVRV NVSLSATEKDLRDFFSFSGEIEFVEMR D+ERSQ+AFVTFKDSKGAETSILLSG
Sbjct: 4   RTVRVTNVSLSATEKDLRDFFSFSGEIEFVEMRNDNERSQLAFVTFKDSKGAETSILLSG 63

Query: 64  ATIVDQPVSITSDPDYNLPAAAAKSPPM--VSTPITENTGS---ATTGSAMEKAEDVVSS 123
           ATIVDQPVSI+S PDYNLPA  A +P    VSTP  +NT S   +T GSAM+KAEDVVSS
Sbjct: 64  ATIVDQPVSISSAPDYNLPAVDASAPVAVPVSTPALDNTTSTTNSTAGSAMQKAEDVVSS 123

Query: 124 MLAKGFSLGKDALNKAKSFDERHQLTSTASFKVASLDQKIGLSEKISVGTTVVNEQVRKM 183
           MLAKGF+LGKDALNKAKSFDERHQLTSTAS KVASLDQKIGLSEKISVGTTVVNE+VR+M
Sbjct: 124 MLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREM 183

Query: 184 DEKFQVSEKTKAAVSTAGSAIMTNRYVSTGASWVTEVFQRVAKTAVEVSQKTKEKVVLAE 243
           DEKFQVSEKTKAAVS AGSAIMTNRYV TGASWV++ FQRVAK AV+VSQKTKEKV+  E
Sbjct: 184 DEKFQVSEKTKAAVSNAGSAIMTNRYVLTGASWVSQTFQRVAKAAVDVSQKTKEKVLAEE 243

Query: 244 DQGKNVGNS 248
           DQGK+VGNS
Sbjct: 244 DQGKHVGNS 252

BLAST of MS020448 vs. ExPASy Swiss-Prot
Match: Q9LFD5 (Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 4.8e-57
Identity = 130/239 (54.39%), Postives = 174/239 (72.80%), Query Frame = 0

Query: 3   VRTVRVANVSLSATEKDLRDFFSFSGEIEFVEMRKDSERSQVAFVTFKDSKGAETSILLS 62
           VR+V+V N+S  ATE D+++FFSFSGE+E ++++ +      A+VTFK+++GAET++LLS
Sbjct: 5   VRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQSNEHS---AYVTFKETQGAETAVLLS 64

Query: 63  GATIVDQPVSITSDPDYNLPAAAAKSPPMVSTPITENTGSATTGSAMEKAEDVVSSMLAK 122
           GA+I DQ V I   P+Y+ PAA          P  E T S+   S ++KAEDVVSSMLAK
Sbjct: 65  GASIADQSVIIELAPNYSPPAA----------PHAE-TQSSGAESVVQKAEDVVSSMLAK 124

Query: 123 GFSLGKDALNKAKSFDERHQLTSTASFKVASLDQKIGLSEKISVGTTVVNEQVRKMDEKF 182
           GF LGKDA+ KAK+FDE+H  TSTA+  VASLDQKIGLS+K++ GT++VNE+++ +D+ F
Sbjct: 125 GFILGKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLVNEKIKAVDQNF 184

Query: 183 QVSEKTKA-------AVSTAGSAIMTNRYVSTGASWVTEVFQRVAKTAVEVSQKTKEKV 235
           QV+E+TK+        VS+AGSA+M NRYV TG SW    F RVA+ A EV QKTKEKV
Sbjct: 185 QVTERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTKEKV 229

BLAST of MS020448 vs. ExPASy Swiss-Prot
Match: P87216 (Protein vip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=vip1 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.1e-06
Identity = 63/245 (25.71%), Postives = 105/245 (42.86%), Query Frame = 0

Query: 2   MVRTVRVANVSLSATEKDLRDFFSFSGEIEFVEMRKDSERSQVAFVTFKDSKGAETSILL 61
           M   V V N+S   TEK + DFFSF G++  +   K  E +Q A + F+     +T++LL
Sbjct: 1   MSNQVIVTNISPEVTEKQISDFFSFCGKVSNISTEKSGE-TQTAKIQFERPSATKTALLL 60

Query: 62  SGATIVDQPVSITSDPDYNLPAAAAKSPPMVSTPITENTGSATTGSAMEKAED---VVSS 121
             A +    + ITS+        AA +        T+  G+    +A ++ +    ++S 
Sbjct: 61  QDALLGQNKIQITSE-----DGGAAST--------TDQGGAGGDQAARQEDKPRSAIISE 120

Query: 122 MLAKGFSLGKDALNKAKSFDERHQLTSTASFKVASLDQKIGLSEKISVGTTVVNEQVRKM 181
           +L++G+ L    L K+                   LDQ  G+S K           VR +
Sbjct: 121 LLSRGYHLSDVTLEKS-----------------IQLDQSYGVSSKFKGILESALSGVRSV 180

Query: 182 DEKFQVSEKTKAAVSTAGSAIMTNRYVSTGASWVTEVFQRVAKTAVEVSQKTKEKVVLAE 241
           +E++ V+EK     +    +   NR     +S V+  F +  +TA   S    +KV  A 
Sbjct: 181 NERYHVTEKANEVDNKFAISDKLNR----TSSLVSTYFHKALETAAGTS--AGQKVQNAY 208

Query: 242 DQGKN 244
           + GKN
Sbjct: 241 EDGKN 208

BLAST of MS020448 vs. ExPASy TrEMBL
Match: A0A6J1D4Q0 (binding partner of ACD11 1-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111017265 PE=4 SV=1)

HSP 1 Score: 449.9 bits (1156), Expect = 6.9e-123
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 0

Query: 2   MVRTVRVANVSLSATEKDLRDFFSFSGEIEFVEMRKDSERSQVAFVTFKDSKGAETSILL 61
           MVRTVRVANVSLSATEKDLRDFFSFSGEIEFVEMRKDSERSQVAFVTFKDSKGAETSILL
Sbjct: 5   MVRTVRVANVSLSATEKDLRDFFSFSGEIEFVEMRKDSERSQVAFVTFKDSKGAETSILL 64

Query: 62  SGATIVDQPVSITSDPDYNLPAAAAKSPPMVSTPITENTGSATTGSAMEKAEDVVSSMLA 121
           SGATIVDQPVSITSDPDYNLPAAAAKSPPMVSTPITENTGSATTGSAMEKAEDVVSSMLA
Sbjct: 65  SGATIVDQPVSITSDPDYNLPAAAAKSPPMVSTPITENTGSATTGSAMEKAEDVVSSMLA 124

Query: 122 KGFSLGKDALNKAKSFDERHQLTSTASFKVASLDQKIGLSEKISVGTTVVNEQVRKMDEK 181
           KGFSLGKDALNKAKSFDERHQLTSTASFKVASLDQKIGLSEKISVGTTVVNEQVRKMDEK
Sbjct: 125 KGFSLGKDALNKAKSFDERHQLTSTASFKVASLDQKIGLSEKISVGTTVVNEQVRKMDEK 184

Query: 182 FQVSEKTKAAVSTAGSAIMTNRYVSTGASWVTEVFQRVAKTAVEVSQKTKEKVVLAEDQG 241
           FQVSEKTKAAVSTAGSAIMTNRYVSTGASWVTEVFQRVAKTAVEVSQKTKEKVVLAEDQG
Sbjct: 185 FQVSEKTKAAVSTAGSAIMTNRYVSTGASWVTEVFQRVAKTAVEVSQKTKEKVVLAEDQG 244

Query: 242 KNVGNSQ 249
           KNVGNSQ
Sbjct: 245 KNVGNSQ 251

BLAST of MS020448 vs. ExPASy TrEMBL
Match: A0A6J1D4M6 (binding partner of ACD11 1-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111017265 PE=4 SV=1)

HSP 1 Score: 449.9 bits (1156), Expect = 6.9e-123
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 0

Query: 2   MVRTVRVANVSLSATEKDLRDFFSFSGEIEFVEMRKDSERSQVAFVTFKDSKGAETSILL 61
           MVRTVRVANVSLSATEKDLRDFFSFSGEIEFVEMRKDSERSQVAFVTFKDSKGAETSILL
Sbjct: 1   MVRTVRVANVSLSATEKDLRDFFSFSGEIEFVEMRKDSERSQVAFVTFKDSKGAETSILL 60

Query: 62  SGATIVDQPVSITSDPDYNLPAAAAKSPPMVSTPITENTGSATTGSAMEKAEDVVSSMLA 121
           SGATIVDQPVSITSDPDYNLPAAAAKSPPMVSTPITENTGSATTGSAMEKAEDVVSSMLA
Sbjct: 61  SGATIVDQPVSITSDPDYNLPAAAAKSPPMVSTPITENTGSATTGSAMEKAEDVVSSMLA 120

Query: 122 KGFSLGKDALNKAKSFDERHQLTSTASFKVASLDQKIGLSEKISVGTTVVNEQVRKMDEK 181
           KGFSLGKDALNKAKSFDERHQLTSTASFKVASLDQKIGLSEKISVGTTVVNEQVRKMDEK
Sbjct: 121 KGFSLGKDALNKAKSFDERHQLTSTASFKVASLDQKIGLSEKISVGTTVVNEQVRKMDEK 180

Query: 182 FQVSEKTKAAVSTAGSAIMTNRYVSTGASWVTEVFQRVAKTAVEVSQKTKEKVVLAEDQG 241
           FQVSEKTKAAVSTAGSAIMTNRYVSTGASWVTEVFQRVAKTAVEVSQKTKEKVVLAEDQG
Sbjct: 181 FQVSEKTKAAVSTAGSAIMTNRYVSTGASWVTEVFQRVAKTAVEVSQKTKEKVVLAEDQG 240

Query: 242 KNVGNSQ 249
           KNVGNSQ
Sbjct: 241 KNVGNSQ 247

BLAST of MS020448 vs. ExPASy TrEMBL
Match: A0A0A0LRG1 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G437070 PE=4 SV=1)

HSP 1 Score: 372.9 bits (956), Expect = 1.1e-99
Identity = 210/249 (84.34%), Postives = 225/249 (90.36%), Query Frame = 0

Query: 4   RTVRVANVSLSATEKDLRDFFSFSGEIEFVEMRKDSERSQVAFVTFKDSKGAETSILLSG 63
           RTVRV NVSLSATEKDLRDFFSFSGEIEFVEMR D+ERSQ+AFVTFKDSKGAETSILLSG
Sbjct: 4   RTVRVTNVSLSATEKDLRDFFSFSGEIEFVEMRNDNERSQLAFVTFKDSKGAETSILLSG 63

Query: 64  ATIVDQPVSITSDPDYNLPAAAAKSPPM--VSTPITENTGS---ATTGSAMEKAEDVVSS 123
           ATIVDQPVSI+S PDYNLPA  A +P    VSTP  +NT S   +T GSAM+KAEDVVSS
Sbjct: 64  ATIVDQPVSISSAPDYNLPAVDASAPVAVPVSTPALDNTTSTTNSTAGSAMQKAEDVVSS 123

Query: 124 MLAKGFSLGKDALNKAKSFDERHQLTSTASFKVASLDQKIGLSEKISVGTTVVNEQVRKM 183
           MLAKGF+LGKDALNKAKSFDERHQLTSTAS KVASLDQKIGLSEKISVGTTVVNE+VR+M
Sbjct: 124 MLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREM 183

Query: 184 DEKFQVSEKTKAAVSTAGSAIMTNRYVSTGASWVTEVFQRVAKTAVEVSQKTKEKVVLAE 243
           DEKFQVSEKTKAAVS AGSAIMTNRYV TGASWV++ FQRVAK AV+VSQKTKEKV+  E
Sbjct: 184 DEKFQVSEKTKAAVSNAGSAIMTNRYVLTGASWVSQTFQRVAKAAVDVSQKTKEKVLAEE 243

Query: 244 DQGKNVGNS 248
           DQGK+VGNS
Sbjct: 244 DQGKHVGNS 252

BLAST of MS020448 vs. ExPASy TrEMBL
Match: A0A5A7TN24 (Binding partner of ACD11 1-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold66G00080 PE=4 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 5.9e-98
Identity = 206/248 (83.06%), Postives = 222/248 (89.52%), Query Frame = 0

Query: 4   RTVRVANVSLSATEKDLRDFFSFSGEIEFVEMRKDSERSQVAFVTFKDSKGAETSILLSG 63
           RTVRV NVSLSATEKDLRDFFSFSGEIEFVEMR D+ERSQ+AFVTFKD KGAETSILLSG
Sbjct: 4   RTVRVTNVSLSATEKDLRDFFSFSGEIEFVEMRNDNERSQLAFVTFKDPKGAETSILLSG 63

Query: 64  ATIVDQPVSITSDPDYNLPAAAAKSPPM--VSTPITENTGSATT--GSAMEKAEDVVSSM 123
           ATIVDQPVSI+S PDYNLPA  A +P    VSTP  +NT S TT  GSA++K EDVVSSM
Sbjct: 64  ATIVDQPVSISSAPDYNLPAVDASAPVAVPVSTPAIDNTTSTTTTAGSAIQKTEDVVSSM 123

Query: 124 LAKGFSLGKDALNKAKSFDERHQLTSTASFKVASLDQKIGLSEKISVGTTVVNEQVRKMD 183
           LAKGF+LGKDALNKAKSFDERHQLTSTAS KVASLDQKIGLSEKISVGTTVVNE+VR+MD
Sbjct: 124 LAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREMD 183

Query: 184 EKFQVSEKTKAAVSTAGSAIMTNRYVSTGASWVTEVFQRVAKTAVEVSQKTKEKVVLAED 243
           EKFQVSEKTKAAVS AGSA+M NRYV TGASWV++ FQRVAK AV+VSQKTKEKV+  ED
Sbjct: 184 EKFQVSEKTKAAVSNAGSALMANRYVLTGASWVSQTFQRVAKAAVDVSQKTKEKVLAEED 243

Query: 244 QGKNVGNS 248
           QGK+VGNS
Sbjct: 244 QGKHVGNS 251

BLAST of MS020448 vs. ExPASy TrEMBL
Match: A0A6J1L7W4 (binding partner of ACD11 1-like OS=Cucurbita maxima OX=3661 GN=LOC111499987 PE=4 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 3.8e-97
Identity = 200/245 (81.63%), Postives = 218/245 (88.98%), Query Frame = 0

Query: 3   VRTVRVANVSLSATEKDLRDFFSFSGEIEFVEMRKDSERSQVAFVTFKDSKGAETSILLS 62
           VRTVRV NVSLSA+EKDLRDFFSFSGEIEFVEMRKD+ERSQ+AFVTFKD KGAETSILLS
Sbjct: 5   VRTVRVTNVSLSASEKDLRDFFSFSGEIEFVEMRKDNERSQIAFVTFKDQKGAETSILLS 64

Query: 63  GATIVDQPVSITSDPDYNLPAAAAKSPPMVSTPITENTGSATTGSAMEKAEDVVSSMLAK 122
           GATIVDQPVSI + PDYNLPA  A +P  VS+P  EN GS T GSAM+KAEDVVSSMLAK
Sbjct: 65  GATIVDQPVSIATAPDYNLPAVPASAPLPVSSPSAENAGSGTAGSAMQKAEDVVSSMLAK 124

Query: 123 GFSLGKDALNKAKSFDERHQLTSTASFKVASLDQKIGLSEKISVGTTVVNEQVRKMDEKF 182
           GF+LGKD LN+AKSFD++HQLTSTAS KV SLDQKIGLSEKISVGTTVVNE+V++MDEKF
Sbjct: 125 GFTLGKDTLNRAKSFDQKHQLTSTASSKVLSLDQKIGLSEKISVGTTVVNEKVKEMDEKF 184

Query: 183 QVSEKTKAAVSTAGSAIMTNRYVSTGASWVTEVFQRVAKTAVEVSQKTKEKVVLAEDQGK 242
           QVSEKTKAAV+ AG+A+M NRYVSTGASWVT+ FQRVAK AVEVS KTKEK VLAEDQ K
Sbjct: 185 QVSEKTKAAVNNAGTALMANRYVSTGASWVTQTFQRVAKAAVEVSHKTKEK-VLAEDQAK 244

Query: 243 NVGNS 248
             G S
Sbjct: 245 QEGRS 248

BLAST of MS020448 vs. TAIR 10
Match: AT4G17720.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 252.3 bits (643), Expect = 4.1e-67
Identity = 146/246 (59.35%), Postives = 185/246 (75.20%), Query Frame = 0

Query: 5   TVRVANVSLSATEKDLRDFFSFSGEIEFVEMRKDSERSQVAFVTFKDSKGAETSILLSGA 64
           TV+V+NVSL AT++DL++FFSFSG+I ++E + ++ER+++A+VTFKD +GAET++LLSGA
Sbjct: 5   TVKVSNVSLGATDRDLKEFFSFSGDILYLETQSETERTKLAYVTFKDLQGAETAVLLSGA 64

Query: 65  TIVDQPVSITSDPDYNL-PAAAAKSPPMVSTPITENTGSATTGSAMEKAEDVVSSMLAKG 124
           TIVD  V ++  PDY L P A A   P  S     N       S + KAEDVVSSMLAKG
Sbjct: 65  TIVDSSVIVSMAPDYQLSPEALASLEPKDS-----NKSPKAGDSVLRKAEDVVSSMLAKG 124

Query: 125 FSLGKDALNKAKSFDERHQLTSTASFKVASLDQKIGLSEKISVGTTVVNEQVRKMDEKFQ 184
           F LGKDA+ KAKS DE+HQLTSTAS KVAS D+KIG ++KI+ GT VV E+VR++D+K+Q
Sbjct: 125 FILGKDAIAKAKSVDEKHQLTSTASAKVASFDKKIGFTDKINTGTVVVGEKVREVDQKYQ 184

Query: 185 VSEKTKAA-------VSTAGSAIMTNRYVSTGASWVTEVFQRVAKTAVEVSQKTKEKVVL 243
           VSEKTK+A       VS AGSAIM NRYV TGA+WVT  F +VAK A EV QK KEKV +
Sbjct: 185 VSEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNKVAKAAEEVGQKAKEKVGM 244

BLAST of MS020448 vs. TAIR 10
Match: AT5G46870.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 248.4 bits (633), Expect = 5.9e-66
Identity = 137/243 (56.38%), Postives = 184/243 (75.72%), Query Frame = 0

Query: 5   TVRVANVSLSATEKDLRDFFSFSGEIEFVEMRKDSERSQVAFVTFKDSKGAETSILLSGA 64
           TV+V+NVSL ATE+DL++FFSFSG+I ++E + +++ S++A+VTFKD +GAET++LL+G+
Sbjct: 5   TVKVSNVSLEATERDLKEFFSFSGDIAYLETQSENDGSKLAYVTFKDLQGAETAVLLTGS 64

Query: 65  TIVDQPVSITSDPDYNLPAAAAKSPPMVSTPITENTGSATTGSAMEKAEDVVSSMLAKGF 124
           TIVD  V++T  PDY LP  A  S   +      ++ +    S   KAEDVVS M++KGF
Sbjct: 65  TIVDSSVTVTMSPDYQLPPDALASIESLKESNKSSSPTREDVSVFRKAEDVVSGMISKGF 124

Query: 125 SLGKDALNKAKSFDERHQLTSTASFKVASLDQKIGLSEKISVGTTVVNEQVRKMDEKFQV 184
            LGKDA+ KAKS DE+HQLTSTAS +V S D++IG +EKI+ GTTVV+E+V+++D+KFQV
Sbjct: 125 VLGKDAIAKAKSLDEKHQLTSTASARVTSFDKRIGFTEKINTGTTVVSEKVKEVDQKFQV 184

Query: 185 SEKTKAA-------VSTAGSAIMTNRYVSTGASWVTEVFQRVAKTAVEVSQKTKEKVVLA 241
           +EKTK+A       VS AGSAIM NRYV TGA+WVT  F RV+K A EV QK KEKV LA
Sbjct: 185 TEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNRVSKAAEEVGQKAKEKVGLA 244

BLAST of MS020448 vs. TAIR 10
Match: AT5G16840.2 (binding partner of acd11 1 )

HSP 1 Score: 226.5 bits (576), Expect = 2.4e-59
Identity = 132/239 (55.23%), Postives = 176/239 (73.64%), Query Frame = 0

Query: 3   VRTVRVANVSLSATEKDLRDFFSFSGEIEFVEMRKDSERSQVAFVTFKDSKGAETSILLS 62
           VR+V+V N+S  ATE D+++FFSFSGE+E ++++  +E S  A+VTFK+++GAET++LLS
Sbjct: 5   VRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQSSNEHS--AYVTFKETQGAETAVLLS 64

Query: 63  GATIVDQPVSITSDPDYNLPAAAAKSPPMVSTPITENTGSATTGSAMEKAEDVVSSMLAK 122
           GA+I DQ V I   P+Y+ PAA          P  E T S+   S ++KAEDVVSSMLAK
Sbjct: 65  GASIADQSVIIELAPNYSPPAA----------PHAE-TQSSGAESVVQKAEDVVSSMLAK 124

Query: 123 GFSLGKDALNKAKSFDERHQLTSTASFKVASLDQKIGLSEKISVGTTVVNEQVRKMDEKF 182
           GF LGKDA+ KAK+FDE+H  TSTA+  VASLDQKIGLS+K++ GT++VNE+++ +D+ F
Sbjct: 125 GFILGKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLVNEKIKAVDQNF 184

Query: 183 QVSEKTKA-------AVSTAGSAIMTNRYVSTGASWVTEVFQRVAKTAVEVSQKTKEKV 235
           QV+E+TK+        VS+AGSA+M NRYV TG SW    F RVA+ A EV QKTKEKV
Sbjct: 185 QVTERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTKEKV 230

BLAST of MS020448 vs. TAIR 10
Match: AT5G16840.1 (binding partner of acd11 1 )

HSP 1 Score: 222.6 bits (566), Expect = 3.4e-58
Identity = 130/239 (54.39%), Postives = 174/239 (72.80%), Query Frame = 0

Query: 3   VRTVRVANVSLSATEKDLRDFFSFSGEIEFVEMRKDSERSQVAFVTFKDSKGAETSILLS 62
           VR+V+V N+S  ATE D+++FFSFSGE+E ++++ +      A+VTFK+++GAET++LLS
Sbjct: 5   VRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQSNEHS---AYVTFKETQGAETAVLLS 64

Query: 63  GATIVDQPVSITSDPDYNLPAAAAKSPPMVSTPITENTGSATTGSAMEKAEDVVSSMLAK 122
           GA+I DQ V I   P+Y+ PAA          P  E T S+   S ++KAEDVVSSMLAK
Sbjct: 65  GASIADQSVIIELAPNYSPPAA----------PHAE-TQSSGAESVVQKAEDVVSSMLAK 124

Query: 123 GFSLGKDALNKAKSFDERHQLTSTASFKVASLDQKIGLSEKISVGTTVVNEQVRKMDEKF 182
           GF LGKDA+ KAK+FDE+H  TSTA+  VASLDQKIGLS+K++ GT++VNE+++ +D+ F
Sbjct: 125 GFILGKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLVNEKIKAVDQNF 184

Query: 183 QVSEKTKA-------AVSTAGSAIMTNRYVSTGASWVTEVFQRVAKTAVEVSQKTKEKV 235
           QV+E+TK+        VS+AGSA+M NRYV TG SW    F RVA+ A EV QKTKEKV
Sbjct: 185 QVTERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTKEKV 229

BLAST of MS020448 vs. TAIR 10
Match: AT5G16840.3 (binding partner of acd11 1 )

HSP 1 Score: 222.6 bits (566), Expect = 3.4e-58
Identity = 130/239 (54.39%), Postives = 174/239 (72.80%), Query Frame = 0

Query: 3   VRTVRVANVSLSATEKDLRDFFSFSGEIEFVEMRKDSERSQVAFVTFKDSKGAETSILLS 62
           VR+V+V N+S  ATE D+++FFSFSGE+E ++++ +      A+VTFK+++GAET++LLS
Sbjct: 3   VRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQSNEHS---AYVTFKETQGAETAVLLS 62

Query: 63  GATIVDQPVSITSDPDYNLPAAAAKSPPMVSTPITENTGSATTGSAMEKAEDVVSSMLAK 122
           GA+I DQ V I   P+Y+ PAA          P  E T S+   S ++KAEDVVSSMLAK
Sbjct: 63  GASIADQSVIIELAPNYSPPAA----------PHAE-TQSSGAESVVQKAEDVVSSMLAK 122

Query: 123 GFSLGKDALNKAKSFDERHQLTSTASFKVASLDQKIGLSEKISVGTTVVNEQVRKMDEKF 182
           GF LGKDA+ KAK+FDE+H  TSTA+  VASLDQKIGLS+K++ GT++VNE+++ +D+ F
Sbjct: 123 GFILGKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLVNEKIKAVDQNF 182

Query: 183 QVSEKTKA-------AVSTAGSAIMTNRYVSTGASWVTEVFQRVAKTAVEVSQKTKEKV 235
           QV+E+TK+        VS+AGSA+M NRYV TG SW    F RVA+ A EV QKTKEKV
Sbjct: 183 QVTERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTKEKV 227

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022148663.11.4e-122100.00binding partner of ACD11 1-like isoform X1 [Momordica charantia][more]
XP_022148664.11.4e-122100.00binding partner of ACD11 1-like isoform X2 [Momordica charantia][more]
XP_038900618.11.7e-9984.74binding partner of ACD11 1-like isoform X2 [Benincasa hispida][more]
XP_038900617.11.7e-9984.74binding partner of ACD11 1-like isoform X1 [Benincasa hispida][more]
XP_004148092.12.2e-9984.34binding partner of ACD11 1 [Cucumis sativus] >KGN63397.1 hypothetical protein Cs... [more]
Match NameE-valueIdentityDescription
Q9LFD54.8e-5754.39Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1[more]
P872165.1e-0625.71Protein vip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN... [more]
Match NameE-valueIdentityDescription
A0A6J1D4Q06.9e-123100.00binding partner of ACD11 1-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC... [more]
A0A6J1D4M66.9e-123100.00binding partner of ACD11 1-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC... [more]
A0A0A0LRG11.1e-9984.34RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G437070 PE=4 SV... [more]
A0A5A7TN245.9e-9883.06Binding partner of ACD11 1-like isoform X1 OS=Cucumis melo var. makuwa OX=119469... [more]
A0A6J1L7W43.8e-9781.63binding partner of ACD11 1-like OS=Cucurbita maxima OX=3661 GN=LOC111499987 PE=4... [more]
Match NameE-valueIdentityDescription
AT4G17720.14.1e-6759.35RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT5G46870.15.9e-6656.38RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT5G16840.22.4e-5955.23binding partner of acd11 1 [more]
AT5G16840.13.4e-5854.39binding partner of acd11 1 [more]
AT5G16840.33.4e-5854.39binding partner of acd11 1 [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 5..74
e-value: 1.9E-10
score: 50.7
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 6..66
e-value: 2.5E-8
score: 33.6
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 4..78
score: 12.253338
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..74
e-value: 1.7E-11
score: 45.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..107
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 92..107
NoneNo IPR availablePANTHERPTHR32343:SF37BINDING PARTNER OF ACD11 1coord: 3..243
NoneNo IPR availablePANTHERPTHR32343SERINE/ARGININE-RICH SPLICING FACTORcoord: 3..243
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 4..80

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS020448.1MS020448.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding