MS020057 (gene) Bitter gourd (TR) v1

Overview


Name	MS020057
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Cytochrome c oxidase assembly protein
Location	scaffold22: 1446703 .. 1446876 (-)
RNA-Seq Expression	MS020057
Synteny	MS020057

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGCAGCGAGTAAAGCAGGCGACTGGGCGTTCAAGGCCCTAACAGCCGGTCTCGGTGTCGCCACCATTTACCTCACTGCTACCTTCTCAGTCAACGTCTACAGAGGATTGTCTTGGCACAAAGCTCAATCCGTATTTCTCTCTCTCCTTCGCTTTATGTATTTTCTTTTC

mRNA sequence

ATGGGAGCAGCGAGTAAAGCAGGCGACTGGGCGTTCAAGGCCCTAACAGCCGGTCTCGGTGTCGCCACCATTTACCTCACTGCTACCTTCTCAGTCAACGTCTACAGAGGATTGTCTTGGCACAAAGCTCAATCCGTATTTCTCTCTCTCCTTCGCTTTATGTATTTTCTTTTC

Coding sequence (CDS)

ATGGGAGCAGCGAGTAAAGCAGGCGACTGGGCGTTCAAGGCCCTAACAGCCGGTCTCGGTGTCGCCACCATTTACCTCACTGCTACCTTCTCAGTCAACGTCTACAGAGGATTGTCTTGGCACAAAGCTCAATCCGTATTTCTCTCTCTCCTTCGCTTTATGTATTTTCTTTTC

Protein sequence

MGAASKAGDWAFKALTAGLGVATIYLTATFSVNVYRGLSWHKAQSVFLSLLRFMYFLF

Homology

[Close]

BLAST of MS020057 vs. NCBI nr
Match: KGN64278.1 (hypothetical protein Csa_014049 [Cucumis sativus])

HSP 1 Score: 90.1 bits (222), Expect = 6.7e-15
Identity = 44/45 (97.78%), Postives = 44/45 (97.78%), Query Frame = 0


Query: 1  MGAASKAGDWAFKALTAGLGVATIYLTATFSVNVYRGLSWHKAQS 46
          MGAASKAGDWAFKA TAGLGVATIYLTATFSVNVYRGLSWHKAQS
Sbjct: 1  MGAASKAGDWAFKAFTAGLGVATIYLTATFSVNVYRGLSWHKAQS 45

[Close]

BLAST of MS020057 vs. NCBI nr
Match: OVA14320.1 (hypothetical protein BVC80_9023g14 [Macleaya cordata])

HSP 1 Score: 85.1 bits (209), Expect = 2.2e-13
Identity = 41/49 (83.67%), Postives = 44/49 (89.80%), Query Frame = 0


Query: 2  GAASKAGDWAFKALTAGLGVATIYLTATFSVNVYRGLSWHKAQSVFLSL 51
          GAAS+ GDWAFKA TAGLGVATIYLTATFSVNVYRGLSWH AQS ++ L
Sbjct: 6  GAASRVGDWAFKAFTAGLGVATIYLTATFSVNVYRGLSWHNAQSEYMQL 54

[Close]

BLAST of MS020057 vs. NCBI nr
Match: THG21745.1 (hypothetical protein TEA_020287 [Camellia sinensis var. sinensis])

HSP 1 Score: 84.7 bits (208), Expect = 2.8e-13
Identity = 41/45 (91.11%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 1  MGAASKAGDWAFKALTAGLGVATIYLTATFSVNVYRGLSWHKAQS 46
          MG ASKAGDWAFKA TAGLGVATIYL ATFSVNVYRGLSWH AQS
Sbjct: 1  MGVASKAGDWAFKAFTAGLGVATIYLAATFSVNVYRGLSWHNAQS 45

[Close]

BLAST of MS020057 vs. NCBI nr
Match: PSR96666.1 (Cytochrome c oxidase assembly protein [Actinidia chinensis var. chinensis])

HSP 1 Score: 84.7 bits (208), Expect = 2.8e-13
Identity = 41/45 (91.11%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 1  MGAASKAGDWAFKALTAGLGVATIYLTATFSVNVYRGLSWHKAQS 46
          MG ASKAGDWAFKA TAGLGVATIYL ATFSVNVYRGLSWH AQS
Sbjct: 1  MGVASKAGDWAFKAFTAGLGVATIYLAATFSVNVYRGLSWHNAQS 45

[Close]

BLAST of MS020057 vs. NCBI nr
Match: KAG2679064.1 (hypothetical protein I3760_11G033400 [Carya illinoinensis] >KAG6635314.1 hypothetical protein CIPAW_11G033900 [Carya illinoinensis] >KAG6686697.1 hypothetical protein I3842_11G033600 [Carya illinoinensis] >KAG7954707.1 hypothetical protein I3843_11G033300 [Carya illinoinensis])

HSP 1 Score: 84.3 bits (207), Expect = 3.7e-13
Identity = 40/45 (88.89%), Postives = 43/45 (95.56%), Query Frame = 0


Query: 1  MGAASKAGDWAFKALTAGLGVATIYLTATFSVNVYRGLSWHKAQS 46
          MG A+KAGDWAFKALTAGLGVATIYLTATFSVN+YRGL+WH AQS
Sbjct: 1  MGIANKAGDWAFKALTAGLGVATIYLTATFSVNLYRGLAWHNAQS 45

[Close]

BLAST of MS020057 vs. ExPASy TrEMBL
Match: A0A0A0LR55 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G045760 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.2e-15
Identity = 44/45 (97.78%), Postives = 44/45 (97.78%), Query Frame = 0


Query: 1  MGAASKAGDWAFKALTAGLGVATIYLTATFSVNVYRGLSWHKAQS 46
          MGAASKAGDWAFKA TAGLGVATIYLTATFSVNVYRGLSWHKAQS
Sbjct: 1  MGAASKAGDWAFKAFTAGLGVATIYLTATFSVNVYRGLSWHKAQS 45

[Close]

BLAST of MS020057 vs. ExPASy TrEMBL
Match: A0A200QV74 (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_9023g14 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.0e-13
Identity = 41/49 (83.67%), Postives = 44/49 (89.80%), Query Frame = 0


Query: 2  GAASKAGDWAFKALTAGLGVATIYLTATFSVNVYRGLSWHKAQSVFLSL 51
          GAAS+ GDWAFKA TAGLGVATIYLTATFSVNVYRGLSWH AQS ++ L
Sbjct: 6  GAASRVGDWAFKAFTAGLGVATIYLTATFSVNVYRGLSWHNAQSEYMQL 54

[Close]

BLAST of MS020057 vs. ExPASy TrEMBL
Match: A0A2R6PUD2 (Cytochrome c oxidase assembly protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc26718 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.4e-13
Identity = 41/45 (91.11%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 1  MGAASKAGDWAFKALTAGLGVATIYLTATFSVNVYRGLSWHKAQS 46
          MG ASKAGDWAFKA TAGLGVATIYL ATFSVNVYRGLSWH AQS
Sbjct: 1  MGVASKAGDWAFKAFTAGLGVATIYLAATFSVNVYRGLSWHNAQS 45

[Close]

BLAST of MS020057 vs. ExPASy TrEMBL
Match: A0A4S4EYQ1 (Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_020287 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.4e-13
Identity = 41/45 (91.11%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 1  MGAASKAGDWAFKALTAGLGVATIYLTATFSVNVYRGLSWHKAQS 46
          MG ASKAGDWAFKA TAGLGVATIYL ATFSVNVYRGLSWH AQS
Sbjct: 1  MGVASKAGDWAFKAFTAGLGVATIYLAATFSVNVYRGLSWHNAQS 45

[Close]

BLAST of MS020057 vs. ExPASy TrEMBL
Match: A0A6A1VDK9 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR6G029297 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.3e-13
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 0


Query: 1  MGAASKAGDWAFKALTAGLGVATIYLTATFSVNVYRGLSWHKAQS 46
          MG ASKAGDWAFKA TAGLGVATIYLTATFSVNVYRGL+WH +QS
Sbjct: 1  MGIASKAGDWAFKAFTAGLGVATIYLTATFSVNVYRGLAWHNSQS 45

The following BLAST results are available for this feature:

BLAST of MS020057 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64278.1	6.7e-15	97.78	hypothetical protein Csa_014049 [Cucumis sativus]	[more]
OVA14320.1	2.2e-13	83.67	hypothetical protein BVC80_9023g14 [Macleaya cordata]	[more]
THG21745.1	2.8e-13	91.11	hypothetical protein TEA_020287 [Camellia sinensis var. sinensis]	[more]
PSR96666.1	2.8e-13	91.11	Cytochrome c oxidase assembly protein [Actinidia chinensis var. chinensis]	[more]
KAG2679064.1	3.7e-13	88.89	hypothetical protein I3760_11G033400 [Carya illinoinensis] >KAG6635314.1 hypothe...	[more]

BLAST of MS020057 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS020057 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LR55	3.2e-15	97.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G045760 PE=4 SV=1	[more]
A0A200QV74	1.0e-13	83.67	Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_9023g14 PE=4 SV=1	[more]
A0A2R6PUD2	1.4e-13	91.11	Cytochrome c oxidase assembly protein OS=Actinidia chinensis var. chinensis OX=1...	[more]
A0A4S4EYQ1	1.4e-13	91.11	Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_0202...	[more]
A0A6A1VDK9	2.3e-13	88.89	Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR6G029297 PE=4 SV=1	[more]

BLAST of MS020057 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR38525	OS03G0824500 PROTEIN	coord: 1..46

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS020057.1	MS020057.1	mRNA