MS019993 (gene) Bitter gourd (TR) v1

Overview


Name	MS019993
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Mediator of RNA polymerase II transcription subunit 13, putative
Location	scaffold22: 1058474 .. 1058881 (+)
RNA-Seq Expression	MS019993
Synteny	MS019993

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAGAAACCAGAGGTTGAAGACGACCACCGTCATCTCGAAATCCTCAAGGCGGTGGCGCAGGCCTGGCACAGCCACACCGGCAGTTCAAAGCCCGCTAATGAATTCGACGCCCACCGCCGGAATTGCAGAGGCACCCCCTCCCGCTTCAAGCTGGAGGCGATAAGAACCAGGTCCTCCGCCGGCGACCGGAGCGGCGGCCCGAGATGGGACTTCAGCCAATCGCTGTGGGACTCGTATGAGATTGTGACGGTGTCGAAGAAGCTGGAGGCGGGGCTGGTTCTCGACGGCGACGTGTTTCATGAATACGACGGCGGCGGGCGAGGGAGAGTCCAGCGGAAACACACAGAGAGTAATAATAGTCTCAGAAACTTGTTCAACAGGGTTTCTTCGAGGAGGTTCAAC

mRNA sequence

ATGAAGAAGAAACCAGAGGTTGAAGACGACCACCGTCATCTCGAAATCCTCAAGGCGGTGGCGCAGGCCTGGCACAGCCACACCGGCAGTTCAAAGCCCGCTAATGAATTCGACGCCCACCGCCGGAATTGCAGAGGCACCCCCTCCCGCTTCAAGCTGGAGGCGATAAGAACCAGGTCCTCCGCCGGCGACCGGAGCGGCGGCCCGAGATGGGACTTCAGCCAATCGCTGTGGGACTCGTATGAGATTGTGACGGTGTCGAAGAAGCTGGAGGCGGGGCTGGTTCTCGACGGCGACGTGTTTCATGAATACGACGGCGGCGGGCGAGGGAGAGTCCAGCGGAAACACACAGAGAGTAATAATAGTCTCAGAAACTTGTTCAACAGGGTTTCTTCGAGGAGGTTCAAC

Coding sequence (CDS)

ATGAAGAAGAAACCAGAGGTTGAAGACGACCACCGTCATCTCGAAATCCTCAAGGCGGTGGCGCAGGCCTGGCACAGCCACACCGGCAGTTCAAAGCCCGCTAATGAATTCGACGCCCACCGCCGGAATTGCAGAGGCACCCCCTCCCGCTTCAAGCTGGAGGCGATAAGAACCAGGTCCTCCGCCGGCGACCGGAGCGGCGGCCCGAGATGGGACTTCAGCCAATCGCTGTGGGACTCGTATGAGATTGTGACGGTGTCGAAGAAGCTGGAGGCGGGGCTGGTTCTCGACGGCGACGTGTTTCATGAATACGACGGCGGCGGGCGAGGGAGAGTCCAGCGGAAACACACAGAGAGTAATAATAGTCTCAGAAACTTGTTCAACAGGGTTTCTTCGAGGAGGTTCAAC

Protein sequence

MKKKPEVEDDHRHLEILKAVAQAWHSHTGSSKPANEFDAHRRNCRGTPSRFKLEAIRTRSSAGDRSGGPRWDFSQSLWDSYEIVTVSKKLEAGLVLDGDVFHEYDGGGRGRVQRKHTESNNSLRNLFNRVSSRRFN

Homology

[Close]

BLAST of MS019993 vs. NCBI nr
Match: XP_022137185.1 (uncharacterized protein LOC111008716 [Momordica charantia])

HSP 1 Score: 278.9 bits (712), Expect = 2.4e-71
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MKKKPEVEDDHRHLEILKAVAQAWHSHTGSSKPANEFDAHRRNCRGTPSRFKLEAIRTRS 60
           MKKKPEVEDDHRHLEILKAVAQAWHSHTGSSKPANEFDAHRRNCRGTPSRFKLEAIRTRS
Sbjct: 1   MKKKPEVEDDHRHLEILKAVAQAWHSHTGSSKPANEFDAHRRNCRGTPSRFKLEAIRTRS 60

Query: 61  SAGDRSGGPRWDFSQSLWDSYEIVTVSKKLEAGLVLDGDVFHEYDGGGRGRVQRKHTESN 120
           SAGDRSGGPRWDFSQSLWDSYEIVTVSKKLEAGLVLDGDVFHEYDGGGRGRVQRKHTESN
Sbjct: 61  SAGDRSGGPRWDFSQSLWDSYEIVTVSKKLEAGLVLDGDVFHEYDGGGRGRVQRKHTESN 120

Query: 121 NSLRNLFNRVSSRRFN 137
           NSLRNLFNRVSSRRFN
Sbjct: 121 NSLRNLFNRVSSRRFN 136

[Close]

BLAST of MS019993 vs. NCBI nr
Match: XP_038894267.1 (uncharacterized protein LOC120082919 [Benincasa hispida])

HSP 1 Score: 209.1 bits (531), Expect = 2.3e-50
Identity = 113/138 (81.88%), Postives = 117/138 (84.78%), Query Frame = 0


Query: 1   MKKKPEV--EDDHRHLEILKAVAQAWHSHTGSSKPANEFDAHRRNCRGTPSRFKLEAIRT 60
           MKKKPE+  +DDHRHLEILKAVAQAWHSHTGSSKPA+EFDAHRRN R TPSRFKLEAIRT
Sbjct: 1   MKKKPELQDDDDHRHLEILKAVAQAWHSHTGSSKPASEFDAHRRNSRPTPSRFKLEAIRT 60

Query: 61  RSSAGDRSGGPRWDFSQSLWDSYEIVTVSKKLEAGLVLDGDVFHEYDGGGRGRVQRKHTE 120
           RSS  DR    RWDF QSLWDSYEIVTVSKKLEAGLVLD D F E DGGG GR QRK  E
Sbjct: 61  RSSVSDR----RWDFGQSLWDSYEIVTVSKKLEAGLVLDRDGFREVDGGG-GRSQRKKRE 120

Query: 121 SNNSLRNLFNRVSSRRFN 137
           S NSLRNLF+R SSRRFN
Sbjct: 121 SCNSLRNLFSRASSRRFN 133

[Close]

BLAST of MS019993 vs. NCBI nr
Match: XP_011651756.1 (uncharacterized protein LOC105434938 [Cucumis sativus])

HSP 1 Score: 193.4 bits (490), Expect = 1.3e-45
Identity = 106/140 (75.71%), Postives = 115/140 (82.14%), Query Frame = 0


Query: 1   MKKKP---EVEDDHRHLEILKAVAQAWHSHTGSSKPANEFDAHRRNCRGTPSRFKLEAIR 60
           MKKKP   ++ DD RHLEILKAVAQAWHSHTG+SKPA+EFDAHRRN R  PSRFK+EAIR
Sbjct: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR 60

Query: 61  TR-SSAGDRSGGPRWDFSQSLWDSYEIVTVSKKLEAGLVLDGDVFHEYDGGGRGRVQRKH 120
           +R S+  DR    RWDF+QSLWDSYEIVTVSKKLEAGLVLDGD F E + GG GR QRK 
Sbjct: 61  SRTSTVSDR----RWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGG-GRSQRKR 120

Query: 121 TESNNSLRNLFNRVSSRRFN 137
            ES NSLRNLFNR SSRRFN
Sbjct: 121 RESCNSLRNLFNRASSRRFN 135

[Close]

BLAST of MS019993 vs. NCBI nr
Match: XP_022923731.1 (uncharacterized protein LOC111431350 [Cucurbita moschata])

HSP 1 Score: 193.4 bits (490), Expect = 1.3e-45
Identity = 105/136 (77.21%), Postives = 110/136 (80.88%), Query Frame = 0


Query: 1   MKKKPEVEDDHRHLEILKAVAQAWHSHTGSSKPANEFDAHRRNCRGTPSRFKLEAIRTRS 60
           MK KP VED+  HLEILKAVAQAW SHTG+SKPA+EFDAHRRNCR  PSRFKLEAIR+RS
Sbjct: 24  MKNKPVVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRS 83

Query: 61  SAGDRSGGPRWDFSQSLWDSYEIVTVSKKLEAGLVLDGDVFHEYDGGGRGRVQRKHTESN 120
           S G   G  RWDF QSLWDSYEIV VSKKLE GLVLDGD F E DGGGR   QRK  ES 
Sbjct: 84  SVG---GMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFREADGGGRN--QRKQRESC 143

Query: 121 NSLRNLFNRVSSRRFN 137
           NSLRNLFNR +SRRFN
Sbjct: 144 NSLRNLFNR-TSRRFN 153

[Close]

BLAST of MS019993 vs. NCBI nr
Match: KAG6584197.1 (hypothetical protein SDJN03_20129, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019794.1 hypothetical protein SDJN02_18757, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 193.4 bits (490), Expect = 1.3e-45
Identity = 105/136 (77.21%), Postives = 110/136 (80.88%), Query Frame = 0


Query: 1   MKKKPEVEDDHRHLEILKAVAQAWHSHTGSSKPANEFDAHRRNCRGTPSRFKLEAIRTRS 60
           MK KP VED+  HLEILKAVAQAW SHTG+SKPA+EFDAHRRNCR  PSRFKLEAIR+RS
Sbjct: 1   MKNKPVVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRS 60

Query: 61  SAGDRSGGPRWDFSQSLWDSYEIVTVSKKLEAGLVLDGDVFHEYDGGGRGRVQRKHTESN 120
           S G   G  RWDF QSLWDSYEIV VSKKLE GLVLDGD F E DGGGR   QRK  ES 
Sbjct: 61  SVG---GMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFREADGGGRN--QRKQRESC 120

Query: 121 NSLRNLFNRVSSRRFN 137
           NSLRNLFNR +SRRFN
Sbjct: 121 NSLRNLFNR-TSRRFN 130

[Close]

BLAST of MS019993 vs. ExPASy TrEMBL
Match: A0A6J1C5Z6 (uncharacterized protein LOC111008716 OS=Momordica charantia OX=3673 GN=LOC111008716 PE=4 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 1.2e-71
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MKKKPEVEDDHRHLEILKAVAQAWHSHTGSSKPANEFDAHRRNCRGTPSRFKLEAIRTRS 60
           MKKKPEVEDDHRHLEILKAVAQAWHSHTGSSKPANEFDAHRRNCRGTPSRFKLEAIRTRS
Sbjct: 1   MKKKPEVEDDHRHLEILKAVAQAWHSHTGSSKPANEFDAHRRNCRGTPSRFKLEAIRTRS 60

Query: 61  SAGDRSGGPRWDFSQSLWDSYEIVTVSKKLEAGLVLDGDVFHEYDGGGRGRVQRKHTESN 120
           SAGDRSGGPRWDFSQSLWDSYEIVTVSKKLEAGLVLDGDVFHEYDGGGRGRVQRKHTESN
Sbjct: 61  SAGDRSGGPRWDFSQSLWDSYEIVTVSKKLEAGLVLDGDVFHEYDGGGRGRVQRKHTESN 120

Query: 121 NSLRNLFNRVSSRRFN 137
           NSLRNLFNRVSSRRFN
Sbjct: 121 NSLRNLFNRVSSRRFN 136

[Close]

BLAST of MS019993 vs. ExPASy TrEMBL
Match: A0A0A0LTM3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G046880 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 6.4e-46
Identity = 106/140 (75.71%), Postives = 115/140 (82.14%), Query Frame = 0


Query: 1   MKKKP---EVEDDHRHLEILKAVAQAWHSHTGSSKPANEFDAHRRNCRGTPSRFKLEAIR 60
           MKKKP   ++ DD RHLEILKAVAQAWHSHTG+SKPA+EFDAHRRN R  PSRFK+EAIR
Sbjct: 1   MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPMPSRFKIEAIR 60

Query: 61  TR-SSAGDRSGGPRWDFSQSLWDSYEIVTVSKKLEAGLVLDGDVFHEYDGGGRGRVQRKH 120
           +R S+  DR    RWDF+QSLWDSYEIVTVSKKLEAGLVLDGD F E + GG GR QRK 
Sbjct: 61  SRTSTVSDR----RWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGG-GRSQRKR 120

Query: 121 TESNNSLRNLFNRVSSRRFN 137
            ES NSLRNLFNR SSRRFN
Sbjct: 121 RESCNSLRNLFNRASSRRFN 135

[Close]

BLAST of MS019993 vs. ExPASy TrEMBL
Match: A0A6J1E7J5 (uncharacterized protein LOC111431350 OS=Cucurbita moschata OX=3662 GN=LOC111431350 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 6.4e-46
Identity = 105/136 (77.21%), Postives = 110/136 (80.88%), Query Frame = 0


Query: 1   MKKKPEVEDDHRHLEILKAVAQAWHSHTGSSKPANEFDAHRRNCRGTPSRFKLEAIRTRS 60
           MK KP VED+  HLEILKAVAQAW SHTG+SKPA+EFDAHRRNCR  PSRFKLEAIR+RS
Sbjct: 24  MKNKPVVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRS 83

Query: 61  SAGDRSGGPRWDFSQSLWDSYEIVTVSKKLEAGLVLDGDVFHEYDGGGRGRVQRKHTESN 120
           S G   G  RWDF QSLWDSYEIV VSKKLE GLVLDGD F E DGGGR   QRK  ES 
Sbjct: 84  SVG---GMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFREADGGGRN--QRKQRESC 143

Query: 121 NSLRNLFNRVSSRRFN 137
           NSLRNLFNR +SRRFN
Sbjct: 144 NSLRNLFNR-TSRRFN 153

[Close]

BLAST of MS019993 vs. ExPASy TrEMBL
Match: A0A5A7UNW1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G003950 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 2.4e-45
Identity = 103/139 (74.10%), Postives = 114/139 (82.01%), Query Frame = 0


Query: 1   MKKKP---EVEDDHRHLEILKAVAQAWHSHTGSSKPANEFDAHRRNCRGTPSRFKLEAIR 60
           MKKKP   ++ D  RHLEILKAVAQAWH+HTG+SKPA+EFDAHRRN R TPSRFKLEAIR
Sbjct: 1   MKKKPDLHQLHDHDRHLEILKAVAQAWHNHTGTSKPASEFDAHRRNSRPTPSRFKLEAIR 60

Query: 61  TRSSAGDRSGGPRWDFSQSLWDSYEIVTVSKKLEAGLVLDGDVFHEYDGGGRGRVQRKHT 120
           +R+++       RWDF+QSLWDSYEIVTVSKKLEAGLVLDGD F E + GG GR QRK  
Sbjct: 61  SRTNS---VSNRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGG-GRSQRKRR 120

Query: 121 ESNNSLRNLFNRVSSRRFN 137
           ES NSLRNLFNR SSRRFN
Sbjct: 121 ESCNSLRNLFNRASSRRFN 135

[Close]

BLAST of MS019993 vs. ExPASy TrEMBL
Match: A0A1S3AX17 (uncharacterized protein LOC103483829 OS=Cucumis melo OX=3656 GN=LOC103483829 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 2.4e-45
Identity = 103/139 (74.10%), Postives = 114/139 (82.01%), Query Frame = 0


Query: 1   MKKKP---EVEDDHRHLEILKAVAQAWHSHTGSSKPANEFDAHRRNCRGTPSRFKLEAIR 60
           MKKKP   ++ D  RHLEILKAVAQAWH+HTG+SKPA+EFDAHRRN R TPSRFKLEAIR
Sbjct: 1   MKKKPDLHQLHDHDRHLEILKAVAQAWHNHTGTSKPASEFDAHRRNSRPTPSRFKLEAIR 60

Query: 61  TRSSAGDRSGGPRWDFSQSLWDSYEIVTVSKKLEAGLVLDGDVFHEYDGGGRGRVQRKHT 120
           +R+++       RWDF+QSLWDSYEIVTVSKKLEAGLVLDGD F E + GG GR QRK  
Sbjct: 61  SRTNS---VSNRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDGFREAESGG-GRSQRKRR 120

Query: 121 ESNNSLRNLFNRVSSRRFN 137
           ES NSLRNLFNR SSRRFN
Sbjct: 121 ESCNSLRNLFNRASSRRFN 135

[Close]

BLAST of MS019993 vs. TAIR 10
Match: AT4G24700.1 (unknown protein; Has 20 Blast hits to 20 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 102.8 bits (255), Expect = 2.2e-22
Identity = 66/147 (44.90%), Postives = 90/147 (61.22%), Query Frame = 0


Query: 1   MKKKPEVEDDH--------RHLEILKAVAQAWHSHTGSSK-PANEFDAHRRNC--RGTPS 60
           M+KK E +D++        + LE++KA AQAW SH+ +SK    EFDA R++   +G  S
Sbjct: 1   MRKKREAKDENEEEEEEKKKRLELMKAAAQAWLSHSQTSKHTVLEFDAQRKHAFVKGKAS 60

Query: 61  RFKLEAIRTRSSAGDRSGGPRWDFSQSLWDSYEIVTVSKKLEAGLVLDGDVFHEYDGGGR 120
           RFK EA+    SA        W+F QSLWD YEI++VSKKLE  L L+   F   D  G 
Sbjct: 61  RFKTEAL----SAKHHPSFLDWEFGQSLWDPYEILSVSKKLERELTLEEQTFSSSDNDGL 120

Query: 121 GRVQRKHT-ESNNSLRNLFNRVSSRRF 136
            ++++K T +S NSLR+LF R SS+RF
Sbjct: 121 KKMKKKKTRDSRNSLRSLFTRSSSKRF 143

The following BLAST results are available for this feature:

BLAST of MS019993 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022137185.1	2.4e-71	100.00	uncharacterized protein LOC111008716 [Momordica charantia]	[more]
XP_038894267.1	2.3e-50	81.88	uncharacterized protein LOC120082919 [Benincasa hispida]	[more]
XP_011651756.1	1.3e-45	75.71	uncharacterized protein LOC105434938 [Cucumis sativus]	[more]
XP_022923731.1	1.3e-45	77.21	uncharacterized protein LOC111431350 [Cucurbita moschata]	[more]
KAG6584197.1	1.3e-45	77.21	hypothetical protein SDJN03_20129, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of MS019993 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS019993 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C5Z6	1.2e-71	100.00	uncharacterized protein LOC111008716 OS=Momordica charantia OX=3673 GN=LOC111008...	[more]
A0A0A0LTM3	6.4e-46	75.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G046880 PE=4 SV=1	[more]
A0A6J1E7J5	6.4e-46	77.21	uncharacterized protein LOC111431350 OS=Cucurbita moschata OX=3662 GN=LOC1114313...	[more]
A0A5A7UNW1	2.4e-45	74.10	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3AX17	2.4e-45	74.10	uncharacterized protein LOC103483829 OS=Cucumis melo OX=3656 GN=LOC103483829 PE=...	[more]

BLAST of MS019993 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24700.1	2.2e-22	44.90	unknown protein; Has 20 Blast hits to 20 proteins in 7 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..51
None	No IPR available	PANTHER	PTHR34665:SF1	OS02G0595200 PROTEIN	coord: 1..136
None	No IPR available	PANTHER	PTHR34665	FAMILY NOT NAMED	coord: 1..136

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS019993.1	MS019993.1	mRNA