MS019920 (gene) Bitter gourd (TR) v1

Overview
NameMS019920
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold22: 560903 .. 561097 (+)
RNA-Seq ExpressionMS019920
SyntenyMS019920
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTAAAAGGAATGGAGGGACAGAAGAGTCATTTCAGTAGATCAGCCGGTGAAGATATGGATATCGACGGCCAAAATAAGAATGGTGAAGATGCCGAAGAAGAGGATGGTATGGACGATAATGGCCTTGCCGTTGGTGGTGAAGCTTCCGAACTCCACCATGCGGGCGTTTCCCGGCAACTGAAAGAGCAGCCCCGG

mRNA sequence

TTAAAAGGAATGGAGGGACAGAAGAGTCATTTCAGTAGATCAGCCGGTGAAGATATGGATATCGACGGCCAAAATAAGAATGGTGAAGATGCCGAAGAAGAGGATGGTATGGACGATAATGGCCTTGCCGTTGGTGGTGAAGCTTCCGAACTCCACCATGCGGGCGTTTCCCGGCAACTGAAAGAGCAGCCCCGG

Coding sequence (CDS)

TTAAAAGGAATGGAGGGACAGAAGAGTCATTTCAGTAGATCAGCCGGTGAAGATATGGATATCGACGGCCAAAATAAGAATGGTGAAGATGCCGAAGAAGAGGATGGTATGGACGATAATGGCCTTGCCGTTGGTGGTGAAGCTTCCGAACTCCACCATGCGGGCGTTTCCCGGCAACTGAAAGAGCAGCCCCGG

Protein sequence

LKGMEGQKSHFSRSAGEDMDIDGQNKNGEDAEEEDGMDDNGLAVGGEASELHHAGVSRQLKEQPR
Homology
BLAST of MS019920 vs. NCBI nr
Match: KAA0055339.1 (hypothetical protein E6C27_scaffold80G001830 [Cucumis melo var. makuwa] >TYJ99265.1 hypothetical protein E5676_scaffold248G004770 [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 8.3e-14
Identity = 44/65 (67.69%), Postives = 53/65 (81.54%), Query Frame = 0

Query: 1  LKGMEGQKSHFSRSAGEDMDIDGQNKNGEDAEEEDGMDDNGLAVGGEASELHHAGVSRQL 60
          +KG EGQKSHF  SAGEDM+IDGQN+NGED E+E+ MDDN LAV GEASE +H  +S QL
Sbjct: 1  MKGREGQKSHFQNSAGEDMNIDGQNENGEDTEKENSMDDNSLAVSGEASEFNHTRISGQL 60

Query: 61 KEQPR 66
          ++Q R
Sbjct: 61 EKQAR 65

BLAST of MS019920 vs. NCBI nr
Match: KGN64423.2 (hypothetical protein Csa_014303 [Cucumis sativus])

HSP 1 Score: 86.3 bits (212), Expect = 1.1e-13
Identity = 44/65 (67.69%), Postives = 54/65 (83.08%), Query Frame = 0

Query: 1  LKGMEGQKSHFSRSAGEDMDIDGQNKNGEDAEEEDGMDDNGLAVGGEASELHHAGVSRQL 60
          +KG E QKSHF  SAGEDM+IDGQN+NGED E+E+GMD+NGLAV GEASE +H  +S QL
Sbjct: 1  MKGREEQKSHFQNSAGEDMNIDGQNENGEDTEKENGMDNNGLAVSGEASEFNHTRISGQL 60

Query: 61 KEQPR 66
          ++Q R
Sbjct: 61 EKQAR 65

BLAST of MS019920 vs. NCBI nr
Match: KAG9445923.1 (hypothetical protein H6P81_012051 [Aristolochia fimbriata])

HSP 1 Score: 53.5 bits (127), Expect = 7.8e-04
Identity = 26/51 (50.98%), Postives = 38/51 (74.51%), Query Frame = 0

Query: 15 AGEDMDIDGQNKNGEDAEEEDGMDDNGLAVGGEASELHHAGVSRQLKEQPR 66
          +G D+D DG  ++G+ AEE+DG+D++G   G E  ELHH+ + RQLK+QPR
Sbjct: 23 SGVDVDADGDEEDGDQAEEDDGVDEDGDGAGLEVVELHHSALPRQLKQQPR 73

BLAST of MS019920 vs. ExPASy TrEMBL
Match: A0A5D3BLR1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G004770 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.0e-14
Identity = 44/65 (67.69%), Postives = 53/65 (81.54%), Query Frame = 0

Query: 1  LKGMEGQKSHFSRSAGEDMDIDGQNKNGEDAEEEDGMDDNGLAVGGEASELHHAGVSRQL 60
          +KG EGQKSHF  SAGEDM+IDGQN+NGED E+E+ MDDN LAV GEASE +H  +S QL
Sbjct: 1  MKGREGQKSHFQNSAGEDMNIDGQNENGEDTEKENSMDDNSLAVSGEASEFNHTRISGQL 60

Query: 61 KEQPR 66
          ++Q R
Sbjct: 61 EKQAR 65

BLAST of MS019920 vs. ExPASy TrEMBL
Match: A0A0A0LTW0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050580 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 5.2e-14
Identity = 44/65 (67.69%), Postives = 54/65 (83.08%), Query Frame = 0

Query: 1  LKGMEGQKSHFSRSAGEDMDIDGQNKNGEDAEEEDGMDDNGLAVGGEASELHHAGVSRQL 60
          +KG E QKSHF  SAGEDM+IDGQN+NGED E+E+GMD+NGLAV GEASE +H  +S QL
Sbjct: 1  MKGREEQKSHFQNSAGEDMNIDGQNENGEDTEKENGMDNNGLAVSGEASEFNHTRISGQL 60

Query: 61 KEQPR 66
          ++Q R
Sbjct: 61 EKQAR 65

BLAST of MS019920 vs. ExPASy TrEMBL
Match: A0A0A9CRB9 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.8e-04
Identity = 26/50 (52.00%), Postives = 37/50 (74.00%), Query Frame = 0

Query: 16 GEDMDIDGQNKNGEDAEEEDGMDDNGLAVGGEASELHHAGVSRQLKEQPR 66
          G D+D DG N++GE+AEE+DG+D++G   GG  +ELHH     QL++QPR
Sbjct: 31 GVDVDADGDNEDGEEAEEDDGVDEDGDGAGGHVAELHHPRPRGQLEQQPR 80

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0055339.18.3e-1467.69hypothetical protein E6C27_scaffold80G001830 [Cucumis melo var. makuwa] >TYJ9926... [more]
KGN64423.21.1e-1367.69hypothetical protein Csa_014303 [Cucumis sativus][more]
KAG9445923.17.8e-0450.98hypothetical protein H6P81_012051 [Aristolochia fimbriata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BLR14.0e-1467.69Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LTW05.2e-1467.69Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050580 PE=4 SV=1[more]
A0A0A9CRB93.8e-0452.00Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..65

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS019920.1MS019920.1mRNA