MS019919 (gene) Bitter gourd (TR) v1

Overview


Name	MS019919
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	MADS-box transcription factor 6-like
Location	scaffold22: 555278 .. 556012 (-)
RNA-Seq Expression	MS019919
Synteny	MS019919

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGAGGGAAAGTGGAGCTGAAGAGAATCGAAAATCCGACGAGTCGGCAGGTGACGTTCTCGAAGCGTCGGAATGGGCTTTTGAAGAAAGCCTACGAGCTCTCCGTCCTCTGCGACGCCGAAGTTGCCCTTCTCGTCTTTTCCCCTTCCGGCAAGGCCTACCAGTTCTCCAGCCACGAGTTCATTTCCTAATTCCTATACCCTTTTTTCTTCATTTCATCCTCCATCTAACAAGAAAATTTAATTTAAATTTGTTAAAGTTTTATTTCTAATTTAATAATTTAGAATGTGTAATTTTTGTTGATTGGGTGTAGCATGGACGGAACCCTAGCCAGGTACCGGAGTGATATGGGGCTACCGCAATCCAACCACCCACATTCACGAGTCATGGTGCTTAATTTAATTTAATTACGGAGCTAATTAATTAATTCTGTTCATGTACGTGTTGTGATTTGTATTGTAATTGTGGGTTTGTAGTTCTGGAAGAGTGAGATGGAGGAGATGAGGAGATCAATAAGCAGCTTGGAGTCCAGACTTAGGTAATATTAATTAATTCATTATTTTTAAATTAATAATTAATTGAATACGTCATGAAAATTTGTGTATTATATTTGTTGGGTGGGTAGGCATTTTGCTGGAGAGGATTTAGGACCATTGAGCGTCAAGGATCTGAAACAGCTTGAAAGACAACTGAGTGTAGGAATTGAACGTGTGCGCTCTAAAAAGGTAAAA

mRNA sequence

ATGGGAAGAGGGAAAGTGGAGCTGAAGAGAATCGAAAATCCGACGAGTCGGCAGGTGACGTTCTCGAAGCGTCGGAATGGGCTTTTGAAGAAAGCCTACGAGCTCTCCGTCCTCTGCGACGCCGAAGTTGCCCTTCTCGTCTTTTCCCCTTCCGGCAAGGCCTACCAGTTCTCCAGCCACGACATGGACGGAACCCTAGCCAGGTACCGGAGTGATATGGGGCTACCGCAATCCAACCACCCACATTCACGAGTCATGTTCTGGAAGAGTGAGATGGAGGAGATGAGGAGATCAATAAGCAGCTTGGAGTCCAGACTTAGGCATTTTGCTGGAGAGGATTTAGGACCATTGAGCGTCAAGGATCTGAAACAGCTTGAAAGACAACTGAGTGTAGGAATTGAACGTGTGCGCTCTAAAAAGGTAAAA

Coding sequence (CDS)

ATGGGAAGAGGGAAAGTGGAGCTGAAGAGAATCGAAAATCCGACGAGTCGGCAGGTGACGTTCTCGAAGCGTCGGAATGGGCTTTTGAAGAAAGCCTACGAGCTCTCCGTCCTCTGCGACGCCGAAGTTGCCCTTCTCGTCTTTTCCCCTTCCGGCAAGGCCTACCAGTTCTCCAGCCACGACATGGACGGAACCCTAGCCAGGTACCGGAGTGATATGGGGCTACCGCAATCCAACCACCCACATTCACGAGTCATGTTCTGGAAGAGTGAGATGGAGGAGATGAGGAGATCAATAAGCAGCTTGGAGTCCAGACTTAGGCATTTTGCTGGAGAGGATTTAGGACCATTGAGCGTCAAGGATCTGAAACAGCTTGAAAGACAACTGAGTGTAGGAATTGAACGTGTGCGCTCTAAAAAGGTAAAA

Protein sequence

MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAEVALLVFSPSGKAYQFSSHDMDGTLARYRSDMGLPQSNHPHSRVMFWKSEMEEMRRSISSLESRLRHFAGEDLGPLSVKDLKQLERQLSVGIERVRSKKVK

Homology

[Close]

BLAST of MS019919 vs. NCBI nr
Match: XP_022137440.1 (truncated transcription factor CAULIFLOWER D-like [Momordica charantia])

HSP 1 Score: 275.4 bits (703), Expect = 2.7e-70
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAEVALLVFSPSGKAYQFSSH 60
           MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAEVALLVFSPSGKAYQFSSH
Sbjct: 1   MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAEVALLVFSPSGKAYQFSSH 60

Query: 61  DMDGTLARYRSDMGLPQSNHPHSRVMFWKSEMEEMRRSISSLESRLRHFAGEDLGPLSVK 120
           DMDGTLARYRSDMGLPQSNHPHSRVMFWKSEMEEMRRSISSLESRLRHFAGEDLGPLSVK
Sbjct: 61  DMDGTLARYRSDMGLPQSNHPHSRVMFWKSEMEEMRRSISSLESRLRHFAGEDLGPLSVK 120

Query: 121 DLKQLERQLSVGIERVRSKK 141
           DLKQLERQLSVGIERVRSKK
Sbjct: 121 DLKQLERQLSVGIERVRSKK 140

[Close]

BLAST of MS019919 vs. NCBI nr
Match: XP_038895205.1 (truncated transcription factor CAULIFLOWER D-like isoform X2 [Benincasa hispida])

HSP 1 Score: 258.8 bits (660), Expect = 2.7e-65
Identity = 127/140 (90.71%), Postives = 138/140 (98.57%), Query Frame = 0


Query: 1   MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAEVALLVFSPSGKAYQFSSH 60
           MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAEVALL+FSPSGKAYQFSSH
Sbjct: 16  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAEVALLIFSPSGKAYQFSSH 75

Query: 61  DMDGTLARYRSDMGLPQSNHPHSRVMFWKSEMEEMRRSISSLESRLRHFAGEDLGPLSVK 120
           DMDGTLARYR+D+GLPQSNHPHSR +FWKSE+E+M+RSISSLE+RLRHFAGEDL PLSVK
Sbjct: 76  DMDGTLARYRTDVGLPQSNHPHSRALFWKSEIEDMKRSISSLEARLRHFAGEDLEPLSVK 135

Query: 121 DLKQLERQLSVGIERVRSKK 141
           +LKQLERQ+SVGIER+RSKK
Sbjct: 136 ELKQLERQMSVGIERIRSKK 155

[Close]

BLAST of MS019919 vs. NCBI nr
Match: XP_038895204.1 (truncated transcription factor CAULIFLOWER D-like isoform X1 [Benincasa hispida])

HSP 1 Score: 258.8 bits (660), Expect = 2.7e-65
Identity = 127/140 (90.71%), Postives = 138/140 (98.57%), Query Frame = 0


Query: 1   MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAEVALLVFSPSGKAYQFSSH 60
           MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAEVALL+FSPSGKAYQFSSH
Sbjct: 16  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAEVALLIFSPSGKAYQFSSH 75

Query: 61  DMDGTLARYRSDMGLPQSNHPHSRVMFWKSEMEEMRRSISSLESRLRHFAGEDLGPLSVK 120
           DMDGTLARYR+D+GLPQSNHPHSR +FWKSE+E+M+RSISSLE+RLRHFAGEDL PLSVK
Sbjct: 76  DMDGTLARYRTDVGLPQSNHPHSRALFWKSEIEDMKRSISSLEARLRHFAGEDLEPLSVK 135

Query: 121 DLKQLERQLSVGIERVRSKK 141
           +LKQLERQ+SVGIER+RSKK
Sbjct: 136 ELKQLERQMSVGIERIRSKK 155

[Close]

BLAST of MS019919 vs. NCBI nr
Match: KAA0055340.1 (transcription factor CAULIFLOWER D-like isoform X2 [Cucumis melo var. makuwa] >TYJ99266.1 truncated transcription factor CAULIFLOWER D-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 257.7 bits (657), Expect = 5.9e-65
Identity = 126/140 (90.00%), Postives = 137/140 (97.86%), Query Frame = 0


Query: 1   MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAEVALLVFSPSGKAYQFSSH 60
           MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDA+VALL+FSPSGKAYQFSSH
Sbjct: 1   MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSH 60

Query: 61  DMDGTLARYRSDMGLPQSNHPHSRVMFWKSEMEEMRRSISSLESRLRHFAGEDLGPLSVK 120
           DMDGTLARYR+D+GLPQSNHPHSR +FWKSEME+M+RSISSLE+RLRHF GEDL PLSVK
Sbjct: 61  DMDGTLARYRTDVGLPQSNHPHSRALFWKSEMEDMKRSISSLEARLRHFVGEDLEPLSVK 120

Query: 121 DLKQLERQLSVGIERVRSKK 141
           +LKQLERQ+SVGIER+RSKK
Sbjct: 121 ELKQLERQMSVGIERIRSKK 140

[Close]

BLAST of MS019919 vs. NCBI nr
Match: XP_023001170.1 (MADS-box transcription factor 6-like [Cucurbita maxima])

HSP 1 Score: 253.8 bits (647), Expect = 8.6e-64
Identity = 124/140 (88.57%), Postives = 137/140 (97.86%), Query Frame = 0


Query: 1   MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAEVALLVFSPSGKAYQFSSH 60
           MGRGKV+LKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAEVALL+FSPSGKAYQFSSH
Sbjct: 1   MGRGKVQLKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAEVALLIFSPSGKAYQFSSH 60

Query: 61  DMDGTLARYRSDMGLPQSNHPHSRVMFWKSEMEEMRRSISSLESRLRHFAGEDLGPLSVK 120
           DMDGTLARYRSD+GLPQSNHPHSR + WKSEME+M+RSI SL++RLR+FAGEDLGPLS+K
Sbjct: 61  DMDGTLARYRSDVGLPQSNHPHSRALLWKSEMEDMKRSIISLDARLRNFAGEDLGPLSLK 120

Query: 121 DLKQLERQLSVGIERVRSKK 141
           +LKQLERQ+S+GIERVRSKK
Sbjct: 121 ELKQLERQMSIGIERVRSKK 140

[Close]

BLAST of MS019919 vs. ExPASy Swiss-Prot
Match: Q8LLR1 (Agamous-like MADS-box protein MADS3 OS=Vitis vinifera OX=29760 GN=MADS3 PE=2 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 4.6e-36
Identity = 78/142 (54.93%), Postives = 97/142 (68.31%), Query Frame = 0


Query: 1   MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAEVALLVFSPSGKAYQFSSH 60
           MGRG+VELKRIEN  +RQVTFSKRRNGLLKKAYELSVLCDAEVAL++FS  GK Y+F S 
Sbjct: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60

Query: 61  DMDGTLARYRSDMGLPQSNHPHSRVMFWKSEMEEMRRSISSLESRLRHFAGEDLGPLSVK 120
               TL RY+     PQ N+       W  E+ +++    SL+   RH  GEDLGPLSVK
Sbjct: 61  GTTKTLERYQRVCYTPQDNNMECETQSWYQEVSKLKAKYESLQRTQRHLLGEDLGPLSVK 120

Query: 121 DLKQLERQLSVGIERVRSKKVK 143
           +L+ LE+QL   + + R +K +
Sbjct: 121 ELQNLEKQLEGALAQARQRKTQ 142

[Close]

BLAST of MS019919 vs. ExPASy Swiss-Prot
Match: Q6EU39 (MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS6 PE=1 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.3e-35
Identity = 79/143 (55.24%), Postives = 99/143 (69.23%), Query Frame = 0


Query: 1   MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAEVALLVFSPSGKAYQFSSH 60
           MGRG+VELKRIEN  +RQVTFSKRRNGLLKKAYELSVLCDAEVAL++FS  GK Y+F S 
Sbjct: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60

Query: 61  DMDGTLARYR-SDMGLPQSNHPHSRVMFWKSEMEEMRRSISSLESRLRHFAGEDLGPLSV 120
            +  TL RY+        SN+  S    W  EM +++    +L+   RH  GEDLGPLSV
Sbjct: 61  GITKTLERYQHCCYNAQDSNNALSETQSWYHEMSKLKAKFEALQRTQRHLLGEDLGPLSV 120

Query: 121 KDLKQLERQLSVGIERVRSKKVK 143
           K+L+QLE+QL   + + R +K +
Sbjct: 121 KELQQLEKQLECALSQARQRKTQ 143

[Close]

BLAST of MS019919 vs. ExPASy Swiss-Prot
Match: Q40872 (Floral homeotic protein AGAMOUS OS=Panax ginseng OX=4054 GN=AG2 PE=2 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.9e-34
Identity = 75/142 (52.82%), Postives = 103/142 (72.54%), Query Frame = 0


Query: 1   MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAEVALLVFSPSGKAYQFSSH 60
           +GRGK+E+KRIEN T+RQVTF KRRNGLLKKAYELSVLCDAEVAL+VFS  G+ Y+++++
Sbjct: 17  LGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANN 76

Query: 61  DMDGTLARYRSDM--GLPQSNHPHSRVMFWKSEMEEMRRSISSLESRLRHFAGEDLGPLS 120
            + GT+ RY+         S+   +   F++ E  ++R+ ISS++   R+  GE LG L+
Sbjct: 77  SVKGTIERYKKACTDSPNTSSVSEANAQFYQQEASKLRQEISSIQKNNRNMMGESLGSLT 136

Query: 121 VKDLKQLERQLSVGIERVRSKK 141
           V+DLK LE +L  GI R+RSKK
Sbjct: 137 VRDLKGLETKLEKGISRIRSKK 158

[Close]

BLAST of MS019919 vs. ExPASy Swiss-Prot
Match: P29381 (Agamous-like MADS-box protein AGL1 OS=Arabidopsis thaliana OX=3702 GN=AGL1 PE=1 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 4.3e-34
Identity = 76/143 (53.15%), Postives = 103/143 (72.03%), Query Frame = 0


Query: 1   MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAEVALLVFSPSGKAYQFSSH 60
           +GRGK+E+KRIEN T+RQVTF KRRNGLLKKAYELSVLCDAEVAL++FS  G+ Y+++++
Sbjct: 16  LGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANN 75

Query: 61  DMDGTLARYR---SDMGLPQSNHPHSRVMFWKSEMEEMRRSISSLESRLRHFAGEDLGPL 120
            + GT+ RY+   SD   P S    +   +++ E  ++RR I  +++  RH  GE LG L
Sbjct: 76  SVRGTIERYKKACSDAVNPPS-VTEANTQYYQQEASKLRRQIRDIQNSNRHIVGESLGSL 135

Query: 121 SVKDLKQLERQLSVGIERVRSKK 141
           + K+LK LE +L  GI RVRSKK
Sbjct: 136 NFKELKNLEGRLEKGISRVRSKK 157

[Close]

BLAST of MS019919 vs. ExPASy Swiss-Prot
Match: Q7XUN2 (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS17 PE=1 SV=2)

HSP 1 Score: 144.8 bits (364), Expect = 7.3e-34
Identity = 76/145 (52.41%), Postives = 98/145 (67.59%), Query Frame = 0


Query: 1   MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAEVALLVFSPSGKAYQFSSH 60
           MGRG+VELKRIEN  +RQVTFSKRRNGLLKKAYELSVLCDAEVAL++FS  GK Y+F S 
Sbjct: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60

Query: 61  DMDGTLARYRSDMGLPQSNH---PHSRVMFWKSEMEEMRRSISSLESRLRHFAGEDLGPL 120
            ++ TL +Y S     Q ++          W  EM  ++  +  L+   RH  GEDLGPL
Sbjct: 61  GINKTLEKYNSCCYNAQGSNSALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDLGPL 120

Query: 121 SVKDLKQLERQLSVGIERVRSKKVK 143
           S+K+L+QLE+QL   + + R +K +
Sbjct: 121 SIKELQQLEKQLEYSLSQARQRKTQ 145

[Close]

BLAST of MS019919 vs. ExPASy TrEMBL
Match: A0A6J1C6N3 (truncated transcription factor CAULIFLOWER D-like OS=Momordica charantia OX=3673 GN=LOC111008884 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.3e-70
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAEVALLVFSPSGKAYQFSSH 60
           MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAEVALLVFSPSGKAYQFSSH
Sbjct: 1   MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAEVALLVFSPSGKAYQFSSH 60

Query: 61  DMDGTLARYRSDMGLPQSNHPHSRVMFWKSEMEEMRRSISSLESRLRHFAGEDLGPLSVK 120
           DMDGTLARYRSDMGLPQSNHPHSRVMFWKSEMEEMRRSISSLESRLRHFAGEDLGPLSVK
Sbjct: 61  DMDGTLARYRSDMGLPQSNHPHSRVMFWKSEMEEMRRSISSLESRLRHFAGEDLGPLSVK 120

Query: 121 DLKQLERQLSVGIERVRSKK 141
           DLKQLERQLSVGIERVRSKK
Sbjct: 121 DLKQLERQLSVGIERVRSKK 140

[Close]

BLAST of MS019919 vs. ExPASy TrEMBL
Match: A0A5A7UJH6 (Transcription factor CAULIFLOWER D-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G004780 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 2.9e-65
Identity = 126/140 (90.00%), Postives = 137/140 (97.86%), Query Frame = 0


Query: 1   MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAEVALLVFSPSGKAYQFSSH 60
           MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDA+VALL+FSPSGKAYQFSSH
Sbjct: 1   MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSH 60

Query: 61  DMDGTLARYRSDMGLPQSNHPHSRVMFWKSEMEEMRRSISSLESRLRHFAGEDLGPLSVK 120
           DMDGTLARYR+D+GLPQSNHPHSR +FWKSEME+M+RSISSLE+RLRHF GEDL PLSVK
Sbjct: 61  DMDGTLARYRTDVGLPQSNHPHSRALFWKSEMEDMKRSISSLEARLRHFVGEDLEPLSVK 120

Query: 121 DLKQLERQLSVGIERVRSKK 141
           +LKQLERQ+SVGIER+RSKK
Sbjct: 121 ELKQLERQMSVGIERIRSKK 140

[Close]

BLAST of MS019919 vs. ExPASy TrEMBL
Match: A0A6J1KKG0 (MADS-box transcription factor 6-like OS=Cucurbita maxima OX=3661 GN=LOC111495387 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 4.1e-64
Identity = 124/140 (88.57%), Postives = 137/140 (97.86%), Query Frame = 0


Query: 1   MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAEVALLVFSPSGKAYQFSSH 60
           MGRGKV+LKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAEVALL+FSPSGKAYQFSSH
Sbjct: 1   MGRGKVQLKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAEVALLIFSPSGKAYQFSSH 60

Query: 61  DMDGTLARYRSDMGLPQSNHPHSRVMFWKSEMEEMRRSISSLESRLRHFAGEDLGPLSVK 120
           DMDGTLARYRSD+GLPQSNHPHSR + WKSEME+M+RSI SL++RLR+FAGEDLGPLS+K
Sbjct: 61  DMDGTLARYRSDVGLPQSNHPHSRALLWKSEMEDMKRSIISLDARLRNFAGEDLGPLSLK 120

Query: 121 DLKQLERQLSVGIERVRSKK 141
           +LKQLERQ+S+GIERVRSKK
Sbjct: 121 ELKQLERQMSIGIERVRSKK 140

[Close]

BLAST of MS019919 vs. ExPASy TrEMBL
Match: Q9AYR8 (Putative MADS-box protein OS=Cucumis sativus OX=3659 GN=ERAF17 PE=2 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 5.4e-64
Identity = 122/140 (87.14%), Postives = 137/140 (97.86%), Query Frame = 0


Query: 1   MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAEVALLVFSPSGKAYQFSSH 60
           MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDA+VALL+FSPSGKAYQFSSH
Sbjct: 1   MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSH 60

Query: 61  DMDGTLARYRSDMGLPQSNHPHSRVMFWKSEMEEMRRSISSLESRLRHFAGEDLGPLSVK 120
           DMDGTLARYR+D+GLPQSNHPHSR +FWK+EM++M+RSISS+E+RLRHF GEDL PL+VK
Sbjct: 61  DMDGTLARYRTDVGLPQSNHPHSRALFWKTEMDDMKRSISSMEARLRHFVGEDLEPLNVK 120

Query: 121 DLKQLERQLSVGIERVRSKK 141
           +LKQLERQ+SVGIER+RSKK
Sbjct: 121 ELKQLERQMSVGIERIRSKK 140

[Close]

BLAST of MS019919 vs. ExPASy TrEMBL
Match: A0A6J1E6Y4 (truncated transcription factor CAULIFLOWER D-like OS=Cucurbita moschata OX=3662 GN=LOC111431347 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 6.0e-63
Identity = 124/140 (88.57%), Postives = 136/140 (97.14%), Query Frame = 0


Query: 1   MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAEVALLVFSPSGKAYQFSSH 60
           MGRGKV+LKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAEVALL+FSPSGKAYQFSSH
Sbjct: 1   MGRGKVQLKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAEVALLIFSPSGKAYQFSSH 60

Query: 61  DMDGTLARYRSDMGLPQSNHPHSRVMFWKSEMEEMRRSISSLESRLRHFAGEDLGPLSVK 120
           DMDGTLARYRSD+GLPQSNHPHSR + WKSEME+M+RSI SL++RLR+FAGEDLG LS+K
Sbjct: 61  DMDGTLARYRSDVGLPQSNHPHSRALVWKSEMEDMKRSIISLDARLRNFAGEDLGLLSLK 120

Query: 121 DLKQLERQLSVGIERVRSKK 141
           +LKQLERQ+SVGIERVRSKK
Sbjct: 121 ELKQLERQMSVGIERVRSKK 140

[Close]

BLAST of MS019919 vs. TAIR 10
Match: AT3G58780.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 145.6 bits (366), Expect = 3.1e-35
Identity = 76/143 (53.15%), Postives = 103/143 (72.03%), Query Frame = 0


Query: 1   MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAEVALLVFSPSGKAYQFSSH 60
           +GRGK+E+KRIEN T+RQVTF KRRNGLLKKAYELSVLCDAEVAL++FS  G+ Y+++++
Sbjct: 16  LGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANN 75

Query: 61  DMDGTLARYR---SDMGLPQSNHPHSRVMFWKSEMEEMRRSISSLESRLRHFAGEDLGPL 120
            + GT+ RY+   SD   P S    +   +++ E  ++RR I  +++  RH  GE LG L
Sbjct: 76  SVRGTIERYKKACSDAVNPPS-VTEANTQYYQQEASKLRRQIRDIQNSNRHIVGESLGSL 135

Query: 121 SVKDLKQLERQLSVGIERVRSKK 141
           + K+LK LE +L  GI RVRSKK
Sbjct: 136 NFKELKNLEGRLEKGISRVRSKK 157

[Close]

BLAST of MS019919 vs. TAIR 10
Match: AT2G42830.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 143.7 bits (361), Expect = 1.2e-34
Identity = 75/143 (52.45%), Postives = 103/143 (72.03%), Query Frame = 0


Query: 1   MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAEVALLVFSPSGKAYQFSSH 60
           +GRGK+E+KRIEN T+RQVTF KRRNGLLKKAYELSVLCDAEVAL++FS  G+ Y+++++
Sbjct: 16  IGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANN 75

Query: 61  DMDGTLARYR---SDMGLPQSNHPHSRVMFWKSEMEEMRRSISSLESRLRHFAGEDLGPL 120
            + GT+ RY+   SD   P +    +   +++ E  ++RR I  +++  RH  GE LG L
Sbjct: 76  SVRGTIERYKKACSDAVNPPT-ITEANTQYYQQEASKLRRQIRDIQNLNRHILGESLGSL 135

Query: 121 SVKDLKQLERQLSVGIERVRSKK 141
           + K+LK LE +L  GI RVRSKK
Sbjct: 136 NFKELKNLESRLEKGISRVRSKK 157

[Close]

BLAST of MS019919 vs. TAIR 10
Match: AT2G42830.2 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 143.7 bits (361), Expect = 1.2e-34
Identity = 75/143 (52.45%), Postives = 103/143 (72.03%), Query Frame = 0


Query: 1   MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAEVALLVFSPSGKAYQFSSH 60
           +GRGK+E+KRIEN T+RQVTF KRRNGLLKKAYELSVLCDAEVAL++FS  G+ Y+++++
Sbjct: 16  IGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANN 75

Query: 61  DMDGTLARYR---SDMGLPQSNHPHSRVMFWKSEMEEMRRSISSLESRLRHFAGEDLGPL 120
            + GT+ RY+   SD   P +    +   +++ E  ++RR I  +++  RH  GE LG L
Sbjct: 76  SVRGTIERYKKACSDAVNPPT-ITEANTQYYQQEASKLRRQIRDIQNLNRHILGESLGSL 135

Query: 121 SVKDLKQLERQLSVGIERVRSKK 141
           + K+LK LE +L  GI RVRSKK
Sbjct: 136 NFKELKNLESRLEKGISRVRSKK 157

[Close]

BLAST of MS019919 vs. TAIR 10
Match: AT2G45650.1 (AGAMOUS-like 6 )

HSP 1 Score: 138.7 bits (348), Expect = 3.7e-33
Identity = 73/143 (51.05%), Postives = 94/143 (65.73%), Query Frame = 0


Query: 1   MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAEVALLVFSPSGKAYQFSSH 60
           MGRG+VE+KRIEN  +RQVTFSKRRNGLLKKAYELSVLCDAEVAL++FS  GK Y+F S 
Sbjct: 1   MGRGRVEMKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSV 60

Query: 61  DMDGTLARYRSDMGLPQSNH-PHSRVMFWKSEMEEMRRSISSLESRLRHFAGEDLGPLSV 120
            ++ T+ RY        SN+ P      W  E+ +++    SL    R+  GEDLG + V
Sbjct: 61  GIESTIERYNRCYNCSLSNNKPEETTQSWCQEVTKLKSKYESLVRTNRNLLGEDLGEMGV 120

Query: 121 KDLKQLERQLSVGIERVRSKKVK 143
           K+L+ LERQL   +   R +K +
Sbjct: 121 KELQALERQLEAALTATRQRKTQ 143

[Close]

BLAST of MS019919 vs. TAIR 10
Match: AT1G24260.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 137.5 bits (345), Expect = 8.3e-33
Identity = 77/147 (52.38%), Postives = 102/147 (69.39%), Query Frame = 0


Query: 1   MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAEVALLVFSPSGKAYQF-SS 60
           MGRG+VELKRIEN  +RQVTF+KRRNGLLKKAYELSVLCDAEVAL++FS  GK Y+F SS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  HDMDGTLARY-RSDMGLPQSNHPHSRVMFWKSEMEE---MRRSISSLESRLRHFAGEDLG 120
             M  TL RY + + G P+ N P    +   S  +E   ++    +L+   R+  GEDLG
Sbjct: 61  SSMLRTLERYQKCNYGAPEPNVPSREALAELSSQQEYLKLKERYDALQRTQRNLLGEDLG 120

Query: 121 PLSVKDLKQLERQLSVGIERVRSKKVK 143
           PLS K+L+ LERQL   ++++R+ + +
Sbjct: 121 PLSTKELESLERQLDSSLKQIRALRTQ 147

The following BLAST results are available for this feature:

BLAST of MS019919 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022137440.1	2.7e-70	100.00	truncated transcription factor CAULIFLOWER D-like [Momordica charantia]	[more]
XP_038895205.1	2.7e-65	90.71	truncated transcription factor CAULIFLOWER D-like isoform X2 [Benincasa hispida]	[more]
XP_038895204.1	2.7e-65	90.71	truncated transcription factor CAULIFLOWER D-like isoform X1 [Benincasa hispida]	[more]
KAA0055340.1	5.9e-65	90.00	transcription factor CAULIFLOWER D-like isoform X2 [Cucumis melo var. makuwa] >T...	[more]
XP_023001170.1	8.6e-64	88.57	MADS-box transcription factor 6-like [Cucurbita maxima]	[more]

BLAST of MS019919 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LLR1	4.6e-36	54.93	Agamous-like MADS-box protein MADS3 OS=Vitis vinifera OX=29760 GN=MADS3 PE=2 SV=...	[more]
Q6EU39	1.3e-35	55.24	MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS...	[more]
Q40872	1.9e-34	52.82	Floral homeotic protein AGAMOUS OS=Panax ginseng OX=4054 GN=AG2 PE=2 SV=1	[more]
P29381	4.3e-34	53.15	Agamous-like MADS-box protein AGL1 OS=Arabidopsis thaliana OX=3702 GN=AGL1 PE=1 ...	[more]
Q7XUN2	7.3e-34	52.41	MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica OX=39947 GN=MAD...	[more]

BLAST of MS019919 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C6N3	1.3e-70	100.00	truncated transcription factor CAULIFLOWER D-like OS=Momordica charantia OX=3673...	[more]
A0A5A7UJH6	2.9e-65	90.00	Transcription factor CAULIFLOWER D-like isoform X2 OS=Cucumis melo var. makuwa O...	[more]
A0A6J1KKG0	4.1e-64	88.57	MADS-box transcription factor 6-like OS=Cucurbita maxima OX=3661 GN=LOC111495387...	[more]
Q9AYR8	5.4e-64	87.14	Putative MADS-box protein OS=Cucumis sativus OX=3659 GN=ERAF17 PE=2 SV=1	[more]
A0A6J1E6Y4	6.0e-63	88.57	truncated transcription factor CAULIFLOWER D-like OS=Cucurbita moschata OX=3662 ...	[more]

BLAST of MS019919 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G58780.1	3.1e-35	53.15	K-box region and MADS-box transcription factor family protein	[more]
AT2G42830.1	1.2e-34	52.45	K-box region and MADS-box transcription factor family protein	[more]
AT2G42830.2	1.2e-34	52.45	K-box region and MADS-box transcription factor family protein	[more]
AT2G45650.1	3.7e-33	51.05	AGAMOUS-like 6	[more]
AT1G24260.1	8.3e-33	52.38	K-box region and MADS-box transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 85..112
None	No IPR available	PANTHER	PTHR48019:SF68	SUBFAMILY NOT NAMED	coord: 1..141
None	No IPR available	PANTHER	PTHR48019	SERUM RESPONSE FACTOR HOMOLOG	coord: 1..141
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 38..59 score: 56.71 coord: 23..38 score: 86.34 coord: 3..23 score: 68.83
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 1..60 e-value: 8.4E-42 score: 154.9
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 10..57 e-value: 1.7E-27 score: 94.7
IPR002100	Transcription factor, MADS-box	PROSITE	PS50066	MADS_BOX_2	coord: 1..61 score: 32.604069
IPR002487	Transcription factor, K-box	PFAM	PF01486	K-box	coord: 83..140 e-value: 3.0E-16 score: 59.4
IPR002487	Transcription factor, K-box	PROSITE	PS51297	K_BOX	coord: 85..142 score: 10.487798
IPR036879	Transcription factor, MADS-box superfamily	GENE3D	3.40.1810.10		coord: 13..83 e-value: 5.0E-29 score: 102.0
IPR036879	Transcription factor, MADS-box superfamily	SUPERFAMILY	55455	SRF-like	coord: 2..91
IPR033896	MADS MEF2-like	CDD	cd00265	MADS_MEF2_like	coord: 2..72 e-value: 3.27854E-42 score: 132.676

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS019919.1	MS019919.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding