MS019505 (gene) Bitter gourd (TR) v1

Overview


Name	MS019505
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	small RNA-binding protein 11, chloroplastic
Location	scaffold729: 61748 .. 64915 (-)
RNA-Seq Expression	MS019505
Synteny	MS019505

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCGATTAGGAAAACAGCGATGGCAGTAAACTCCAGTCGTCGTGTTCTTCCCTCTCTATTTCCGCCGTCTCGTCTCGTCTCTTACAGAGGCATAGCTTCGAAGCTTTTTGTTGGAGGTAAATTCGACTTTCCTCCTCTCTAATTTTCCGATTCATCATGTCCGATTACCTTTGAATTTTACATTTGAAAATTGAAATCACTCTGTTTGCCGCGAATTTTCTTTGCTGATTGACTGTTCCTCTGGATCCGTGGATTGAGCTAGCTCTATAGTCTGTACGAGACTATGAATTGTTTGAAGTAAGGTCTCTGAGATGTCCGCGCGTTATGTTTTGTGAAGTATAATATTTGTTTTAACATCGCAAGTGAAACTGTAACTATATAAATGTGAGCTTCTGTACTGATTTACAATTAAGATCGTGGAAAAATTTGGAGAAAACTTATTTGAAGTTTGCAATTAAGATATATGTATTTATATTCGTCTCAAAATTGATATCTGTTCTGTATACTGTAAAGGATAAACGTCTAATTGATATGTATACGTTTTTTTGAAAGAAACAATTTCATTGATGTATGAAATTACAAAAGTCTCGTAGGATTGATATGTATACTCTGTCCTTTTATTTCCTAATAATGATATCAAAGATCAAAATGATGGATAGATGTGAAAGGAATGTAAAGGATTTATAGAAGGAAAAGAAAAAAGGTGCAAGTTGCCATCAGATCTATGTGATACCTGGCTCCACTAGTTAGAGCTTCCTTAGCTAAACTAGGAGTCTTATGTCCGCAAGCACCAAGCCAAGAGGTCTTCCTCTTCATCTTTCTACCGTTCTTTTTGCCACTCAACATTGCATGCGGATCGCTAAGTTCCTAAGCTCCAATAGCTAGAATGTTAATGTAACCCTGCCAAGACACTGTGGCATTGCTTCAATGCTATGACTTCGACTTGAATATCAACCTTCAGACCATATTTATCTTATGCATTTTTTTTTTTAAATAATAAGATTCATCATAAGCAATTATGCCCAAACCAGTTCGCCACTTGCTGAAATCCATGCAGCATCCCCGATCATATTAAAGTTATTGACCCTAGCATTGGAGAAAATGGATATGAAGGGAGCTCTCATTGCTTCTAGTGCCTTCTCATTTGGAATATTTTCCAGGTTATTCAAATAGGTTTAGGCCCACCTACAGTTTGTGTATTTGTTTGAATTGTTGTACAAAGCATTATTGCTTTCTTGCCACACGGCCAAAGATACAATTATAAAAAAATTAAAATTATGTGGTAAATGTGTCTTCTCATCCTTTTCCTTTTTCTTCAAGCATAGGGTGTGTAGGTAATGCTATTCCTCTTGATAGGAGAAGTTCTTTGCCTTTGAATTAGTGTTTAGGTGGGGTTCCCCAAGGGGAAGGGACTTCAAGATCGGGTTTTGAATGAATGGTCAAGCCTTAATGGCTGCTTATCACTTTGCTGGTGCTTTGCCTCAAAAGAGTCCGGTAAAGGAATGAAGGTTAGGAAAATGGGTGTAATCAGTCAAAAAGGAGGCACTTCTAGGAAGAGAGTAAGAGAATCAAGGAATTTAGCTTGCTCCATAAACTATAATGGTAAACTTGCTTCATTTCGAGTTAGGGACTTCTCTGTTTCTTGATGAAGATCTAAGGGGTTTTAAGGATGTTGAAGGTTCTTGCAAGGAGGTGTAGGGTTGGCCCATTTTAGCGATTCTCTCTAGGTGTCAATGACTAAATTATTCATAATTTTCCTTTTAGGTTTGATTCTTAAGAATAGAAACCTTCTTTTGTAATATTGGCTCCTTGTTGGGCTTGCCTTTTTGTATGATCCTTGCTTTTGAGACATCAACATTATCTTGGTTTTTACTTGGATGGGAAGAAAAAGTGGGCGACCGACTTGTTGAAGAACCATGGTCAATTTACTAAGATGCTTTCATTTTTGTGTCCTGAAATTGGAAGTGAAACATCTTTCTTCCTATAGCTTCAATTGTTAGTTCCTCCCATCTCCGAATTTATCTTAGCACTTTCTTGACAGTTCAGTATTTACGTTCCTGTGTCTTAGAATTTTCCCCACTAATGTTACCTCTTTTGAGTTTGCTGCAATTTAGCTTGTTCCTCTTCTTCCTTGAGCATGAACTCCCTGAATCTATCTGTAAGTGTATTGGAAGACCAACTTTGGTTGCCATTGCTTATTGTCTTTGACAACCAAAACCGTCCATTAAGCATTGGAAAAAGCTCACAAAGAAGAAGCTCTCTTCAATTCTCTTAAGAAGAAAACCTAAAGAGACCAAGAATATATATGCACCTTAAACTTTTCAAATCTAGGATGTGTTAAGTTCTTCAAGTTGAAAATAATCTGCTGGATGTCATTTATGGGTGATATACATTCCTTGATTGTCGCAAACTGTTAGTGTGGCCTTGTTCTGCCAAACAGCCACACTAACTTCTCGTGTAATGGGATTTAGATTTTGAGGAACCAACCCCATTTTTATCCCTCTTTCACTGTTAACCCATGATCTCAAGTTGATTTCCCTTTCAGGCAGATTCTTACGTGTCACATTGATTAATAGAATTTCAAACTGTTCTTATGAAAAAGAATAGTCATTGTATACAATAACGTTCTTGAGTTTTTTGCTATTTGATTATTTTTCAGTCTATACATATTTCAACTCCTTGTGTCTTATTGAAATCCTCTCTCTGGAATATTTTGCTTCAGGACTATCATTTTACACCACAGAAAAAGGATTATCAGAAGCTTTTTCTCAGTACGGTCAGGTCGTTGAAGGTGAGTTCCATTCAGACACTTTAGCTTTCATGTCTAACCATGGTAATTTAGTTTCATGGAGCATAACACAATTTTCTCAACTCCAGCTAAAGTTGTGATGGACAGAGTCTCTGATAGGTCAAAAGGTTTCGGATTCGTCACCTTCGCATCCGAAGACGAAGCTCATAAAGCGCTGACAGATATGAATGGCAAAGTCTGCTAGCACTTCCCTCTATTTCATTACTTCTTTCATCCTAGAAATTTAAATCTAATGGTTTTCTGCTGCAGGCGTTGAACGGAAGGGTCATTTTTGTGGACTACGCAAAACCTGTAACCAGTTTTCGTGGCGAAATCCCTATAGCGAGAGGACCTCCCGAGGGAAAAACTGATAAA

mRNA sequence

ATGGCGGCGATTAGGAAAACAGCGATGGCAGTAAACTCCAGTCGTCGTGTTCTTCCCTCTCTATTTCCGCCGTCTCGTCTCGTCTCTTACAGAGGCATAGCTTCGAAGCTTTTTGTTGGAGGACTATCATTTTACACCACAGAAAAAGGATTATCAGAAGCTTTTTCTCAGTACGGTCAGGTCGTTGAAGCTAAAGTTGTGATGGACAGAGTCTCTGATAGGTCAAAAGGTTTCGGATTCGTCACCTTCGCATCCGAAGACGAAGCTCATAAAGCGCTGACAGATATGAATGGCAAAGCGTTGAACGGAAGGGTCATTTTTGTGGACTACGCAAAACCTGTAACCAGTTTTCGTGGCGAAATCCCTATAGCGAGAGGACCTCCCGAGGGAAAAACTGATAAA

Coding sequence (CDS)

ATGGCGGCGATTAGGAAAACAGCGATGGCAGTAAACTCCAGTCGTCGTGTTCTTCCCTCTCTATTTCCGCCGTCTCGTCTCGTCTCTTACAGAGGCATAGCTTCGAAGCTTTTTGTTGGAGGACTATCATTTTACACCACAGAAAAAGGATTATCAGAAGCTTTTTCTCAGTACGGTCAGGTCGTTGAAGCTAAAGTTGTGATGGACAGAGTCTCTGATAGGTCAAAAGGTTTCGGATTCGTCACCTTCGCATCCGAAGACGAAGCTCATAAAGCGCTGACAGATATGAATGGCAAAGCGTTGAACGGAAGGGTCATTTTTGTGGACTACGCAAAACCTGTAACCAGTTTTCGTGGCGAAATCCCTATAGCGAGAGGACCTCCCGAGGGAAAAACTGATAAA

Protein sequence

MAAIRKTAMAVNSSRRVLPSLFPPSRLVSYRGIASKLFVGGLSFYTTEKGLSEAFSQYGQVVEAKVVMDRVSDRSKGFGFVTFASEDEAHKALTDMNGKALNGRVIFVDYAKPVTSFRGEIPIARGPPEGKTDK

Homology

[Close]

BLAST of MS019505 vs. NCBI nr
Match: XP_022144583.1 (small RNA-binding protein 11, chloroplastic [Momordica charantia])

HSP 1 Score: 261.9 bits (668), Expect = 3.0e-66
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MAAIRKTAMAVNSSRRVLPSLFPPSRLVSYRGIASKLFVGGLSFYTTEKGLSEAFSQYGQ 60
           MAAIRKTAMAVNSSRRVLPSLFPPSRLVSYRGIASKLFVGGLSFYTTEKGLSEAFSQYGQ
Sbjct: 1   MAAIRKTAMAVNSSRRVLPSLFPPSRLVSYRGIASKLFVGGLSFYTTEKGLSEAFSQYGQ 60

Query: 61  VVEAKVVMDRVSDRSKGFGFVTFASEDEAHKALTDMNGKALNGRVIFVDYAKPVTSFRGE 120
           VVEAKVVM+RVSDRSKGFGFVTFASEDEAHKALTDMNGKALNGRVIFVDYAKPVTSFRGE
Sbjct: 61  VVEAKVVMNRVSDRSKGFGFVTFASEDEAHKALTDMNGKALNGRVIFVDYAKPVTSFRGE 120

Query: 121 IPIARGPPEGKTDK 135
           IPIARGPPEGKTDK
Sbjct: 121 IPIARGPPEGKTDK 134

[Close]

BLAST of MS019505 vs. NCBI nr
Match: XP_023538908.1 (small RNA-binding protein 11, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 222.6 bits (566), Expect = 2.0e-54
Identity = 115/135 (85.19%), Postives = 126/135 (93.33%), Query Frame = 0


Query: 1   MAAIRKTAMAVNSSRRVLPSLF-PPSRLVSYRGIASKLFVGGLSFYTTEKGLSEAFSQYG 60
           MAAIRK AMA++S RRVL SLF PPSRL+S+RGIASKLFVGGLSFYT++KGLSEAFSQYG
Sbjct: 1   MAAIRK-AMAISSDRRVLTSLFHPPSRLISFRGIASKLFVGGLSFYTSDKGLSEAFSQYG 60

Query: 61  QVVEAKVVMDRVSDRSKGFGFVTFASEDEAHKALTDMNGKALNGRVIFVDYAKPVTSFRG 120
           QVVEAKVV DRVSD+SKGFGFVTFASEDEAH ALT+MNGK+LNGRVIFVDYAKP T+FRG
Sbjct: 61  QVVEAKVVTDRVSDKSKGFGFVTFASEDEAHTALTEMNGKSLNGRVIFVDYAKPTTNFRG 120

Query: 121 EIPIARGPPEGKTDK 135
            IPIARGPPE KTD+
Sbjct: 121 GIPIARGPPEEKTDE 134

[Close]

BLAST of MS019505 vs. NCBI nr
Match: XP_023005174.1 (small RNA-binding protein 11, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 222.6 bits (566), Expect = 2.0e-54
Identity = 114/135 (84.44%), Postives = 128/135 (94.81%), Query Frame = 0


Query: 1   MAAIRKTAMAVNSSRRVLPSLF-PPSRLVSYRGIASKLFVGGLSFYTTEKGLSEAFSQYG 60
           MAAIRK AMA++S+R VLPS+F PPSRL+S+RGIASKLFVGGLSFYT++KGLSEAFSQYG
Sbjct: 1   MAAIRK-AMAISSNRCVLPSVFTPPSRLISFRGIASKLFVGGLSFYTSDKGLSEAFSQYG 60

Query: 61  QVVEAKVVMDRVSDRSKGFGFVTFASEDEAHKALTDMNGKALNGRVIFVDYAKPVTSFRG 120
           QVVEAKVVMDRVSD+SKGFGFVTFASEDEAH ALT+MNGK+LNGRVIFVDYAKP ++FRG
Sbjct: 61  QVVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTEMNGKSLNGRVIFVDYAKPTSNFRG 120

Query: 121 EIPIARGPPEGKTDK 135
            IPIARGPPE KTD+
Sbjct: 121 GIPIARGPPEEKTDE 134

[Close]

BLAST of MS019505 vs. NCBI nr
Match: XP_022933740.1 (small RNA-binding protein 11, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 221.9 bits (564), Expect = 3.4e-54
Identity = 115/135 (85.19%), Postives = 126/135 (93.33%), Query Frame = 0


Query: 1   MAAIRKTAMAVNSSRRVLPSLF-PPSRLVSYRGIASKLFVGGLSFYTTEKGLSEAFSQYG 60
           MAAIRK AMA++S RRVL SLF PPSRL+S+RGIASKLFVGGLSFYT++KGLSEAFSQYG
Sbjct: 1   MAAIRK-AMAMSSDRRVLTSLFHPPSRLISFRGIASKLFVGGLSFYTSDKGLSEAFSQYG 60

Query: 61  QVVEAKVVMDRVSDRSKGFGFVTFASEDEAHKALTDMNGKALNGRVIFVDYAKPVTSFRG 120
           QVVEAKVV DRVSD+SKGFGFVTFASEDEAH ALT+MNGK+LNGRVIFVDYAKP T+FRG
Sbjct: 61  QVVEAKVVTDRVSDKSKGFGFVTFASEDEAHTALTEMNGKSLNGRVIFVDYAKPTTNFRG 120

Query: 121 EIPIARGPPEGKTDK 135
            IPIARGPPE KTD+
Sbjct: 121 GIPIARGPPEEKTDE 134

[Close]

BLAST of MS019505 vs. NCBI nr
Match: KAG7028125.1 (Small RNA-binding protein 11, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 221.9 bits (564), Expect = 3.4e-54
Identity = 114/135 (84.44%), Postives = 127/135 (94.07%), Query Frame = 0


Query: 1   MAAIRKTAMAVNSSRRVLPSLF-PPSRLVSYRGIASKLFVGGLSFYTTEKGLSEAFSQYG 60
           MAAIRK AMA++S RRVL SLF PPSRL+S+RGIASKLFVGGLSFYT++KGL+EAFSQYG
Sbjct: 1   MAAIRK-AMAMSSDRRVLTSLFHPPSRLISFRGIASKLFVGGLSFYTSDKGLAEAFSQYG 60

Query: 61  QVVEAKVVMDRVSDRSKGFGFVTFASEDEAHKALTDMNGKALNGRVIFVDYAKPVTSFRG 120
           QVVEAKVVMDRVSD+SKGFGFVTFAS+DEAH ALT+MNGK+LNGRVIFVDYAKP T+FRG
Sbjct: 61  QVVEAKVVMDRVSDKSKGFGFVTFASDDEAHTALTEMNGKSLNGRVIFVDYAKPTTNFRG 120

Query: 121 EIPIARGPPEGKTDK 135
            IPIARGPPE KTD+
Sbjct: 121 GIPIARGPPEEKTDE 134

[Close]

BLAST of MS019505 vs. ExPASy Swiss-Prot
Match: Q9FFZ6 (Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S-RBP11 PE=2 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.4e-34
Identity = 75/101 (74.26%), Postives = 84/101 (83.17%), Query Frame = 0


Query: 31  RGIASKLFVGGLSFYTTEKGLSEAFSQYGQVVEAKVVMDRVSDRSKGFGFVTFASEDEAH 90
           RG+ASKLF+GGLSF TTE+GLSEAFS+ GQVVEA++VMDRVSDRSKGFGFVTFAS DEA 
Sbjct: 30  RGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQ 89

Query: 91  KALTDMNGKALNGRVIFVDYAKPVTSF--RGEIPIARGPPE 130
           KAL + NG+ LNGR IFVDYAK   S    G  PIARGPP+
Sbjct: 90  KALMEFNGQQLNGRTIFVDYAKAKQSLGGGGGYPIARGPPD 130

[Close]

BLAST of MS019505 vs. ExPASy Swiss-Prot
Match: Q9FNR1 (Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG3 PE=1 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.1e-18
Identity = 47/101 (46.53%), Postives = 70/101 (69.31%), Query Frame = 0


Query: 19  PSLFPPSRLVSYRGIASKLFVGGLSFYTTEKGLSEAFSQYGQVVEAKVVMDRVSDRSKGF 78
           PSLF   R +S    +SKLF+GG+++   E  L EAF++YG+VV+ +V++DR + RS+GF
Sbjct: 28  PSLFQAIRCMS----SSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGF 87

Query: 79  GFVTFASEDEAHKALTDMNGKALNGRVIFVDYAKPVTSFRG 120
           GFVTF S + A  A+  ++G+ L+GRV+ V+YA   TS  G
Sbjct: 88  GFVTFTSSEAASSAIQALDGRDLHGRVVKVNYANDRTSGGG 124

[Close]

BLAST of MS019505 vs. ExPASy Swiss-Prot
Match: Q9LIS2 (Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG4 PE=2 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.4e-18
Identity = 50/100 (50.00%), Postives = 69/100 (69.00%), Query Frame = 0


Query: 25  SRLVSYRGIASKLFVGGLSFYTTEKGLSEAFSQYGQVVEAKVVMDRVSDRSKGFGFVTFA 84
           S L S R ++SKLFVGGLS+ T +  L +AF+ +G+V EA V+ DR + RS+GFGFV+F+
Sbjct: 25  SMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFS 84

Query: 85  SEDEAHKALTDMNGKALNGRVIFVDYA-----KPVTSFRG 120
            ED A+ A+ +M+GK LNGR I V+ A      P +SF G
Sbjct: 85  CEDSANNAIKEMDGKELNGRQIRVNLATERSSAPRSSFGG 124

[Close]

BLAST of MS019505 vs. ExPASy Swiss-Prot
Match: Q28IQ9 (Cold-inducible RNA-binding protein OS=Xenopus tropicalis OX=8364 GN=cirbp PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 7.0e-18
Identity = 45/76 (59.21%), Postives = 57/76 (75.00%), Query Frame = 0


Query: 36  KLFVGGLSFYTTEKGLSEAFSQYGQVVEAKVVMDRVSDRSKGFGFVTFASEDEAHKALTD 95
           KLFVGGL+F TTE+ L + FS+YGQV E  VV DR S RS+GFGFVTF + ++A  A+  
Sbjct: 7   KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66

Query: 96  MNGKALNGRVIFVDYA 112
           MNGK+++GR I VD A
Sbjct: 67  MNGKSVDGRQIRVDQA 82

[Close]

BLAST of MS019505 vs. ExPASy Swiss-Prot
Match: Q8L440 (Organelle RRM domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM1 PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.2e-17
Identity = 41/77 (53.25%), Postives = 58/77 (75.32%), Query Frame = 0


Query: 36  KLFVGGLSFYTTEKGLSEAFSQYGQVVEAKVVMDRVSDRSKGFGFVTFASEDEAHKALTD 95
           KLF+ GLSFYT+EK L  AF  +G++VE K++MD++S RSKG+ F+ + +E+ A  AL +
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKE 342

Query: 96  MNGKALNGRVIFVDYAK 113
           MNGK +NG +I VD AK
Sbjct: 343 MNGKIINGWMIVVDVAK 359

[Close]

BLAST of MS019505 vs. ExPASy TrEMBL
Match: A0A6J1CTN5 (small RNA-binding protein 11, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111014233 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.4e-66
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MAAIRKTAMAVNSSRRVLPSLFPPSRLVSYRGIASKLFVGGLSFYTTEKGLSEAFSQYGQ 60
           MAAIRKTAMAVNSSRRVLPSLFPPSRLVSYRGIASKLFVGGLSFYTTEKGLSEAFSQYGQ
Sbjct: 1   MAAIRKTAMAVNSSRRVLPSLFPPSRLVSYRGIASKLFVGGLSFYTTEKGLSEAFSQYGQ 60

Query: 61  VVEAKVVMDRVSDRSKGFGFVTFASEDEAHKALTDMNGKALNGRVIFVDYAKPVTSFRGE 120
           VVEAKVVM+RVSDRSKGFGFVTFASEDEAHKALTDMNGKALNGRVIFVDYAKPVTSFRGE
Sbjct: 61  VVEAKVVMNRVSDRSKGFGFVTFASEDEAHKALTDMNGKALNGRVIFVDYAKPVTSFRGE 120

Query: 121 IPIARGPPEGKTDK 135
           IPIARGPPEGKTDK
Sbjct: 121 IPIARGPPEGKTDK 134

[Close]

BLAST of MS019505 vs. ExPASy TrEMBL
Match: A0A6J1KYF3 (small RNA-binding protein 11, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111498283 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 9.7e-55
Identity = 114/135 (84.44%), Postives = 128/135 (94.81%), Query Frame = 0


Query: 1   MAAIRKTAMAVNSSRRVLPSLF-PPSRLVSYRGIASKLFVGGLSFYTTEKGLSEAFSQYG 60
           MAAIRK AMA++S+R VLPS+F PPSRL+S+RGIASKLFVGGLSFYT++KGLSEAFSQYG
Sbjct: 1   MAAIRK-AMAISSNRCVLPSVFTPPSRLISFRGIASKLFVGGLSFYTSDKGLSEAFSQYG 60

Query: 61  QVVEAKVVMDRVSDRSKGFGFVTFASEDEAHKALTDMNGKALNGRVIFVDYAKPVTSFRG 120
           QVVEAKVVMDRVSD+SKGFGFVTFASEDEAH ALT+MNGK+LNGRVIFVDYAKP ++FRG
Sbjct: 61  QVVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTEMNGKSLNGRVIFVDYAKPTSNFRG 120

Query: 121 EIPIARGPPEGKTDK 135
            IPIARGPPE KTD+
Sbjct: 121 GIPIARGPPEEKTDE 134

[Close]

BLAST of MS019505 vs. ExPASy TrEMBL
Match: A0A6J1F5P0 (small RNA-binding protein 11, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111441037 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.6e-54
Identity = 115/135 (85.19%), Postives = 126/135 (93.33%), Query Frame = 0


Query: 1   MAAIRKTAMAVNSSRRVLPSLF-PPSRLVSYRGIASKLFVGGLSFYTTEKGLSEAFSQYG 60
           MAAIRK AMA++S RRVL SLF PPSRL+S+RGIASKLFVGGLSFYT++KGLSEAFSQYG
Sbjct: 1   MAAIRK-AMAMSSDRRVLTSLFHPPSRLISFRGIASKLFVGGLSFYTSDKGLSEAFSQYG 60

Query: 61  QVVEAKVVMDRVSDRSKGFGFVTFASEDEAHKALTDMNGKALNGRVIFVDYAKPVTSFRG 120
           QVVEAKVV DRVSD+SKGFGFVTFASEDEAH ALT+MNGK+LNGRVIFVDYAKP T+FRG
Sbjct: 61  QVVEAKVVTDRVSDKSKGFGFVTFASEDEAHTALTEMNGKSLNGRVIFVDYAKPTTNFRG 120

Query: 121 EIPIARGPPEGKTDK 135
            IPIARGPPE KTD+
Sbjct: 121 GIPIARGPPEEKTDE 134

[Close]

BLAST of MS019505 vs. ExPASy TrEMBL
Match: A0A0A0LE31 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G777670 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 4.1e-53
Identity = 113/135 (83.70%), Postives = 123/135 (91.11%), Query Frame = 0


Query: 1   MAAIRKTAMAVNSSRRVLPSLF-PPSRLVSYRGIASKLFVGGLSFYTTEKGLSEAFSQYG 60
           M AIRK AMA+ S+RRVLPSLF PPSRLVSYRGIA+KLFVGGLS+YTT+KGLSEAFSQYG
Sbjct: 1   MEAIRK-AMAITSNRRVLPSLFPPPSRLVSYRGIATKLFVGGLSYYTTDKGLSEAFSQYG 60

Query: 61  QVVEAKVVMDRVSDRSKGFGFVTFASEDEAHKALTDMNGKALNGRVIFVDYAKPVTSFRG 120
           QV+EA VVMDRVSD+SKGFGFVTFAS DEAH AL++MNGK LNGRVIFV+YAKP TS RG
Sbjct: 61  QVIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKPLNGRVIFVNYAKPTTSSRG 120

Query: 121 EIPIARGPPEGKTDK 135
            IPIARGPPE KTDK
Sbjct: 121 AIPIARGPPEEKTDK 134

[Close]

BLAST of MS019505 vs. ExPASy TrEMBL
Match: A0A5A7TKK4 (Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004160 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 2.0e-52
Identity = 111/135 (82.22%), Postives = 124/135 (91.85%), Query Frame = 0


Query: 1   MAAIRKTAMAVNSSRRVLPSLF-PPSRLVSYRGIASKLFVGGLSFYTTEKGLSEAFSQYG 60
           M AIRK A+A++S+RRVLPSLF PPSRLVS+RGIA+KLFVGGLS+YTT+KGLSEAFSQYG
Sbjct: 1   MEAIRK-AIAISSNRRVLPSLFPPPSRLVSFRGIATKLFVGGLSYYTTDKGLSEAFSQYG 60

Query: 61  QVVEAKVVMDRVSDRSKGFGFVTFASEDEAHKALTDMNGKALNGRVIFVDYAKPVTSFRG 120
           QV+EA VVMDRVSD+SKGFGFVTFAS DEAH AL++MNGK LNGRVIFV+YAKP TS RG
Sbjct: 61  QVIEATVVMDRVSDKSKGFGFVTFASIDEAHTALSEMNGKPLNGRVIFVNYAKPTTSTRG 120

Query: 121 EIPIARGPPEGKTDK 135
            IPIARGPPE KTDK
Sbjct: 121 SIPIARGPPEEKTDK 134

[Close]

BLAST of MS019505 vs. TAIR 10
Match: AT5G06210.1 (RNA binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 147.1 bits (370), Expect = 9.9e-36
Identity = 75/101 (74.26%), Postives = 84/101 (83.17%), Query Frame = 0


Query: 31  RGIASKLFVGGLSFYTTEKGLSEAFSQYGQVVEAKVVMDRVSDRSKGFGFVTFASEDEAH 90
           RG+ASKLF+GGLSF TTE+GLSEAFS+ GQVVEA++VMDRVSDRSKGFGFVTFAS DEA 
Sbjct: 30  RGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQ 89

Query: 91  KALTDMNGKALNGRVIFVDYAKPVTSF--RGEIPIARGPPE 130
           KAL + NG+ LNGR IFVDYAK   S    G  PIARGPP+
Sbjct: 90  KALMEFNGQQLNGRTIFVDYAKAKQSLGGGGGYPIARGPPD 130

[Close]

BLAST of MS019505 vs. TAIR 10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3 )

HSP 1 Score: 94.4 bits (233), Expect = 7.6e-20
Identity = 47/101 (46.53%), Postives = 70/101 (69.31%), Query Frame = 0


Query: 19  PSLFPPSRLVSYRGIASKLFVGGLSFYTTEKGLSEAFSQYGQVVEAKVVMDRVSDRSKGF 78
           PSLF   R +S    +SKLF+GG+++   E  L EAF++YG+VV+ +V++DR + RS+GF
Sbjct: 28  PSLFQAIRCMS----SSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGF 87

Query: 79  GFVTFASEDEAHKALTDMNGKALNGRVIFVDYAKPVTSFRG 120
           GFVTF S + A  A+  ++G+ L+GRV+ V+YA   TS  G
Sbjct: 88  GFVTFTSSEAASSAIQALDGRDLHGRVVKVNYANDRTSGGG 124

[Close]

BLAST of MS019505 vs. TAIR 10
Match: AT3G23830.1 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 94.0 bits (232), Expect = 1.0e-19
Identity = 50/100 (50.00%), Postives = 69/100 (69.00%), Query Frame = 0


Query: 25  SRLVSYRGIASKLFVGGLSFYTTEKGLSEAFSQYGQVVEAKVVMDRVSDRSKGFGFVTFA 84
           S L S R ++SKLFVGGLS+ T +  L +AF+ +G+V EA V+ DR + RS+GFGFV+F+
Sbjct: 25  SMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFS 84

Query: 85  SEDEAHKALTDMNGKALNGRVIFVDYA-----KPVTSFRG 120
            ED A+ A+ +M+GK LNGR I V+ A      P +SF G
Sbjct: 85  CEDSANNAIKEMDGKELNGRQIRVNLATERSSAPRSSFGG 124

[Close]

BLAST of MS019505 vs. TAIR 10
Match: AT3G23830.2 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 94.0 bits (232), Expect = 1.0e-19
Identity = 50/100 (50.00%), Postives = 69/100 (69.00%), Query Frame = 0


Query: 25  SRLVSYRGIASKLFVGGLSFYTTEKGLSEAFSQYGQVVEAKVVMDRVSDRSKGFGFVTFA 84
           S L S R ++SKLFVGGLS+ T +  L +AF+ +G+V EA V+ DR + RS+GFGFV+F+
Sbjct: 25  SMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFS 84

Query: 85  SEDEAHKALTDMNGKALNGRVIFVDYA-----KPVTSFRG 120
            ED A+ A+ +M+GK LNGR I V+ A      P +SF G
Sbjct: 85  CEDSANNAIKEMDGKELNGRQIRVNLATERSSAPRSSFGG 124

[Close]

BLAST of MS019505 vs. TAIR 10
Match: AT3G46020.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 92.4 bits (228), Expect = 2.9e-19
Identity = 43/89 (48.31%), Postives = 63/89 (70.79%), Query Frame = 0


Query: 33  IASKLFVGGLSFYTTEKGLSEAFSQYGQVVEAKVVMDRVSDRSKGFGFVTFASEDEAHKA 92
           I+++LFV  LS YTT++ L + FS +GQ+ EA+++ D  + R KGFGF+TF SED+A KA
Sbjct: 5   ISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKA 64

Query: 93  LTDMNGKALNGRVIFVDYAKPVTSFRGEI 122
           L  ++GK ++GR+IFV+ AK     R  I
Sbjct: 65  LKSLDGKIVDGRLIFVEVAKNAEEVRAGI 93

The following BLAST results are available for this feature:

BLAST of MS019505 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144583.1	3.0e-66	99.25	small RNA-binding protein 11, chloroplastic [Momordica charantia]	[more]
XP_023538908.1	2.0e-54	85.19	small RNA-binding protein 11, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_023005174.1	2.0e-54	84.44	small RNA-binding protein 11, chloroplastic-like [Cucurbita maxima]	[more]
XP_022933740.1	3.4e-54	85.19	small RNA-binding protein 11, chloroplastic-like [Cucurbita moschata]	[more]
KAG7028125.1	3.4e-54	84.44	Small RNA-binding protein 11, chloroplastic [Cucurbita argyrosperma subsp. argyr...	[more]

BLAST of MS019505 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FFZ6	1.4e-34	74.26	Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S...	[more]
Q9FNR1	1.1e-18	46.53	Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q9LIS2	1.4e-18	50.00	Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q28IQ9	7.0e-18	59.21	Cold-inducible RNA-binding protein OS=Xenopus tropicalis OX=8364 GN=cirbp PE=2 S...	[more]
Q8L440	1.2e-17	53.25	Organelle RRM domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana...	[more]

BLAST of MS019505 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CTN5	1.4e-66	99.25	small RNA-binding protein 11, chloroplastic OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A6J1KYF3	9.7e-55	84.44	small RNA-binding protein 11, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1F5P0	1.6e-54	85.19	small RNA-binding protein 11, chloroplastic-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A0A0LE31	4.1e-53	83.70	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G777670 PE=4 SV...	[more]
A0A5A7TKK4	2.0e-52	82.22	Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]

BLAST of MS019505 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G06210.1	9.9e-36	74.26	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G61030.1	7.6e-20	46.53	glycine-rich RNA-binding protein 3	[more]
AT3G23830.1	1.0e-19	50.00	glycine-rich RNA-binding protein 4	[more]
AT3G23830.2	1.0e-19	50.00	glycine-rich RNA-binding protein 4	[more]
AT3G46020.1	2.9e-19	48.31	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 36..109 e-value: 2.7E-28 score: 110.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 37..106 e-value: 7.3E-23 score: 80.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 35..113 score: 21.2927
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 31..133 e-value: 2.4E-30 score: 107.5
None	No IPR available	PANTHER	PTHR15241:SF335	GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL-LIKE	coord: 1..133
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 1..133
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 35..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS019505.1	MS019505.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding