MS019503 (gene) Bitter gourd (TR) v1

Overview


Name	MS019503
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Protein Ycf2
Location	scaffold729: 49419 .. 49640 (-)
RNA-Seq Expression	MS019503
Synteny	MS019503

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCCCAAACAGATCTTCCTACCTCTATATATAAACGCTGCACAAGAAAAACACTTCAGATTGTTGATTCATCGCCAGAGATGGCTTAGAACTAATAGTTCATTATTTAATGGATTTTTCGATTCTAATACTTCATCCGAGAGTTATCAGTATTTATCAAATCTGTTTCTATCTAACGGAAGGCTATTGGATCAAATGACAAAGACATTGTTGAGAAAAAGA

mRNA sequence

CTTCCCAAACAGATCTTCCTACCTCTATATATAAACGCTGCACAAGAAAAACACTTCAGATTGTTGATTCATCGCCAGAGATGGCTTAGAACTAATAGTTCATTATTTAATGGATTTTTCGATTCTAATACTTCATCCGAGAGTTATCAGTATTTATCAAATCTGTTTCTATCTAACGGAAGGCTATTGGATCAAATGACAAAGACATTGTTGAGAAAAAGA

Coding sequence (CDS)

CTTCCCAAACAGATCTTCCTACCTCTATATATAAACGCTGCACAAGAAAAACACTTCAGATTGTTGATTCATCGCCAGAGATGGCTTAGAACTAATAGTTCATTATTTAATGGATTTTTCGATTCTAATACTTCATCCGAGAGTTATCAGTATTTATCAAATCTGTTTCTATCTAACGGAAGGCTATTGGATCAAATGACAAAGACATTGTTGAGAAAAAGA

Protein sequence

LPKQIFLPLYINAAQEKHFRLLIHRQRWLRTNSSLFNGFFDSNTSSESYQYLSNLFLSNGRLLDQMTKTLLRKR

Homology

[Close]

BLAST of MS019503 vs. NCBI nr
Match: YP_009669529.1 (Ycf2 protein [Krameria lanceolata] >YP_009669546.1 Ycf2 protein [Krameria lanceolata] >QCW94528.1 Ycf2 protein [Krameria lanceolata] >QCW94545.1 Ycf2 protein [Krameria lanceolata])

HSP 1 Score: 116.3 bits (290), Expect = 1.1e-22
Identity = 60/74 (81.08%), Postives = 62/74 (83.78%), Query Frame = 0


Query: 1    LPKQIFLPLYINAAQEKHFRLLIHRQRWLRTNSSLFNGFFDSNTSSESYQYLSNLFLSNG 60
            LP  I+   +I   QEKHF LLIHRQRWLRTNSSL NGFF SNT SESYQYLSNLFLSNG
Sbjct: 2195 LPTSIYKRWFIKNTQEKHFELLIHRQRWLRTNSSLSNGFFHSNTLSESYQYLSNLFLSNG 2254

Query: 61   RLLDQMTKTLLRKR 75
            RLLDQMTKTLLRKR
Sbjct: 2255 RLLDQMTKTLLRKR 2268

[Close]

BLAST of MS019503 vs. NCBI nr
Match: YP_009669445.1 (Ycf2 protein [Krameria bicolor] >YP_009669462.1 Ycf2 protein [Krameria bicolor] >QCW94444.1 Ycf2 protein [Krameria bicolor] >QCW94461.1 Ycf2 protein [Krameria bicolor])

HSP 1 Score: 116.3 bits (290), Expect = 1.1e-22
Identity = 60/74 (81.08%), Postives = 62/74 (83.78%), Query Frame = 0


Query: 1    LPKQIFLPLYINAAQEKHFRLLIHRQRWLRTNSSLFNGFFDSNTSSESYQYLSNLFLSNG 60
            LP  I+   +I   QEKHF LLIHRQRWLRTNSSL NGFF SNT SESYQYLSNLFLSNG
Sbjct: 2195 LPTSIYKRWFIKNTQEKHFELLIHRQRWLRTNSSLSNGFFHSNTLSESYQYLSNLFLSNG 2254

Query: 61   RLLDQMTKTLLRKR 75
            RLLDQMTKTLLRKR
Sbjct: 2255 RLLDQMTKTLLRKR 2268

[Close]

BLAST of MS019503 vs. NCBI nr
Match: YP_009766718.1 (Ycf2 [Petalostylis labicheoides] >YP_009766735.1 Ycf2 [Petalostylis labicheoides] >QIS97253.1 Ycf2 [Petalostylis labicheoides] >QIS97270.1 Ycf2 [Petalostylis labicheoides])

HSP 1 Score: 115.9 bits (289), Expect = 1.5e-22
Identity = 60/74 (81.08%), Postives = 62/74 (83.78%), Query Frame = 0


Query: 1    LPKQIFLPLYINAAQEKHFRLLIHRQRWLRTNSSLFNGFFDSNTSSESYQYLSNLFLSNG 60
            LP  I+   +I   QEKHF LLIHRQRWLRTNSSL NGFF SNT SESYQYLSNLFLSNG
Sbjct: 2199 LPTSIYKRWFIKNTQEKHFELLIHRQRWLRTNSSLSNGFFRSNTLSESYQYLSNLFLSNG 2258

Query: 61   RLLDQMTKTLLRKR 75
            RLLDQMTKTLLRKR
Sbjct: 2259 RLLDQMTKTLLRKR 2272

[Close]

BLAST of MS019503 vs. NCBI nr
Match: YP_009127486.1 (hypothetical chloroplast RF21 [Indigofera tinctoria] >YP_009127503.1 hypothetical chloroplast RF21 [Indigofera tinctoria] >AHY33101.1 hypothetical chloroplast RF21 [Indigofera tinctoria] >AHY33119.1 hypothetical chloroplast RF21 [Indigofera tinctoria])

HSP 1 Score: 115.9 bits (289), Expect = 1.5e-22
Identity = 60/74 (81.08%), Postives = 62/74 (83.78%), Query Frame = 0


Query: 1    LPKQIFLPLYINAAQEKHFRLLIHRQRWLRTNSSLFNGFFDSNTSSESYQYLSNLFLSNG 60
            LP  I+   +IN  QEKHF LLIHRQRWLRTNSSL NGFF SNT SESYQYLSNLFLSNG
Sbjct: 2071 LPTSIYKRWFINNTQEKHFELLIHRQRWLRTNSSLSNGFFRSNTLSESYQYLSNLFLSNG 2130

Query: 61   RLLDQMTKTLLRKR 75
             LLDQMTKTLLRKR
Sbjct: 2131 TLLDQMTKTLLRKR 2144

[Close]

BLAST of MS019503 vs. NCBI nr
Match: KAF4396239.1 (hypothetical protein F8388_019785 [Cannabis sativa])

HSP 1 Score: 115.5 bits (288), Expect = 1.9e-22
Identity = 62/74 (83.78%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 1   LPKQIFLPLYINAAQEKHFRLLIHRQRWLRTNSSLFNGFFDSNTSSESYQYLSNLFLSNG 60
           LPKQIFL LYINA  EK+F LLI+RQRWLRTNSSL NGFF SNT SESYQYLS LFLSNG
Sbjct: 274 LPKQIFLHLYINA--EKYFELLIYRQRWLRTNSSLSNGFFHSNTPSESYQYLSKLFLSNG 333

Query: 61  RLLDQMTKTLLRKR 75
            LLD+MTKTLLRKR
Sbjct: 334 TLLDEMTKTLLRKR 345

[Close]

BLAST of MS019503 vs. ExPASy Swiss-Prot
Match: Q49KT6 (Protein Ycf2 OS=Eucalyptus globulus subsp. globulus OX=71271 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 3.2e-25
Identity = 59/73 (80.82%), Postives = 61/73 (83.56%), Query Frame = 0


Query: 2    PKQIFLPLYINAAQEKHFRLLIHRQRWLRTNSSLFNGFFDSNTSSESYQYLSNLFLSNGR 61
            P  I+   +I   QEKHF LLIHRQRWLRTNSSL NGFF SNT SESYQYLSNLFLSNGR
Sbjct: 2196 PTSIYKRWFIKNTQEKHFELLIHRQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGR 2255

Query: 62   LLDQMTKTLLRKR 75
            LLDQMTKTLLRKR
Sbjct: 2256 LLDQMTKTLLRKR 2268

[Close]

BLAST of MS019503 vs. ExPASy Swiss-Prot
Match: B1A978 (Protein Ycf2 OS=Carica papaya OX=3649 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.6e-24
Identity = 58/73 (79.45%), Postives = 60/73 (82.19%), Query Frame = 0


Query: 2    PKQIFLPLYINAAQEKHFRLLIHRQRWLRTNSSLFNGFFDSNTSSESYQYLSNLFLSNGR 61
            P  I+   +I   QEKHF LLIHRQRWLRTNSSL NGFF SNT SESYQYLSNLFLSNG 
Sbjct: 2214 PTSIYKRWFIKNTQEKHFELLIHRQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGT 2273

Query: 62   LLDQMTKTLLRKR 75
            LLDQMTKTLLRKR
Sbjct: 2274 LLDQMTKTLLRKR 2286

[Close]

BLAST of MS019503 vs. ExPASy Swiss-Prot
Match: Q09MB4 (Protein Ycf2 OS=Citrus sinensis OX=2711 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.6e-24
Identity = 58/73 (79.45%), Postives = 60/73 (82.19%), Query Frame = 0


Query: 2    PKQIFLPLYINAAQEKHFRLLIHRQRWLRTNSSLFNGFFDSNTSSESYQYLSNLFLSNGR 61
            P  I+   +I   QEKHF LLIHRQRWLRTNSSL NGFF SNT SESYQYLSNLFLSNG 
Sbjct: 2198 PTSIYKRWFIKNTQEKHFELLIHRQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGT 2257

Query: 62   LLDQMTKTLLRKR 75
            LLDQMTKTLLRKR
Sbjct: 2258 LLDQMTKTLLRKR 2270

[Close]

BLAST of MS019503 vs. ExPASy Swiss-Prot
Match: Q9B1K6 (Protein Ycf2 OS=Lotus japonicus OX=34305 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.6e-24
Identity = 57/74 (77.03%), Postives = 61/74 (82.43%), Query Frame = 0


Query: 1    LPKQIFLPLYINAAQEKHFRLLIHRQRWLRTNSSLFNGFFDSNTSSESYQYLSNLFLSNG 60
            LP  I+   +I   QEKHF LLIHRQRWLRTN+SL NGFF SNT SESYQYLSN+FLSNG
Sbjct: 2206 LPTSIYKRWFIKNTQEKHFELLIHRQRWLRTNNSLSNGFFRSNTLSESYQYLSNMFLSNG 2265

Query: 61   RLLDQMTKTLLRKR 75
             LLDQMTKTLLRKR
Sbjct: 2266 TLLDQMTKTLLRKR 2279

[Close]

BLAST of MS019503 vs. ExPASy Swiss-Prot
Match: Q14F97 (Protein Ycf2 OS=Populus alba OX=43335 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 8.0e-24
Identity = 57/73 (78.08%), Postives = 59/73 (80.82%), Query Frame = 0


Query: 2    PKQIFLPLYINAAQEKHFRLLIHRQRWLRTNSSLFNGFFDSNTSSESYQYLSNLFLSNGR 61
            P  I+   +I   QEKHF LLIHRQRWLRT SSL NGFF SNT SESYQYLSNLFLSNGR
Sbjct: 2198 PTSIYKRWFIKNTQEKHFELLIHRQRWLRTKSSLSNGFFRSNTLSESYQYLSNLFLSNGR 2257

Query: 62   LLDQMTKTLLRKR 75
            LLDQMTK LLRKR
Sbjct: 2258 LLDQMTKALLRKR 2270

[Close]

BLAST of MS019503 vs. ExPASy TrEMBL
Match: A0A4Y5PR37 (Protein Ycf2 OS=Krameria lanceolata OX=66689 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 5.4e-23
Identity = 60/74 (81.08%), Postives = 62/74 (83.78%), Query Frame = 0


Query: 1    LPKQIFLPLYINAAQEKHFRLLIHRQRWLRTNSSLFNGFFDSNTSSESYQYLSNLFLSNG 60
            LP  I+   +I   QEKHF LLIHRQRWLRTNSSL NGFF SNT SESYQYLSNLFLSNG
Sbjct: 2195 LPTSIYKRWFIKNTQEKHFELLIHRQRWLRTNSSLSNGFFHSNTLSESYQYLSNLFLSNG 2254

Query: 61   RLLDQMTKTLLRKR 75
            RLLDQMTKTLLRKR
Sbjct: 2255 RLLDQMTKTLLRKR 2268

[Close]

BLAST of MS019503 vs. ExPASy TrEMBL
Match: A0A4Y5PR25 (Protein Ycf2 OS=Krameria bicolor OX=2042419 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 5.4e-23
Identity = 60/74 (81.08%), Postives = 62/74 (83.78%), Query Frame = 0


Query: 1    LPKQIFLPLYINAAQEKHFRLLIHRQRWLRTNSSLFNGFFDSNTSSESYQYLSNLFLSNG 60
            LP  I+   +I   QEKHF LLIHRQRWLRTNSSL NGFF SNT SESYQYLSNLFLSNG
Sbjct: 2195 LPTSIYKRWFIKNTQEKHFELLIHRQRWLRTNSSLSNGFFHSNTLSESYQYLSNLFLSNG 2254

Query: 61   RLLDQMTKTLLRKR 75
            RLLDQMTKTLLRKR
Sbjct: 2255 RLLDQMTKTLLRKR 2268

[Close]

BLAST of MS019503 vs. ExPASy TrEMBL
Match: A0A158V0L0 (Protein Ycf2 OS=Indigofera tinctoria OX=198914 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 7.0e-23
Identity = 60/74 (81.08%), Postives = 62/74 (83.78%), Query Frame = 0


Query: 1    LPKQIFLPLYINAAQEKHFRLLIHRQRWLRTNSSLFNGFFDSNTSSESYQYLSNLFLSNG 60
            LP  I+   +IN  QEKHF LLIHRQRWLRTNSSL NGFF SNT SESYQYLSNLFLSNG
Sbjct: 2071 LPTSIYKRWFINNTQEKHFELLIHRQRWLRTNSSLSNGFFRSNTLSESYQYLSNLFLSNG 2130

Query: 61   RLLDQMTKTLLRKR 75
             LLDQMTKTLLRKR
Sbjct: 2131 TLLDQMTKTLLRKR 2144

[Close]

BLAST of MS019503 vs. ExPASy TrEMBL
Match: A0A6H0E618 (Protein Ycf2 OS=Petalostylis labicheoides OX=162878 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 7.0e-23
Identity = 60/74 (81.08%), Postives = 62/74 (83.78%), Query Frame = 0


Query: 1    LPKQIFLPLYINAAQEKHFRLLIHRQRWLRTNSSLFNGFFDSNTSSESYQYLSNLFLSNG 60
            LP  I+   +I   QEKHF LLIHRQRWLRTNSSL NGFF SNT SESYQYLSNLFLSNG
Sbjct: 2199 LPTSIYKRWFIKNTQEKHFELLIHRQRWLRTNSSLSNGFFRSNTLSESYQYLSNLFLSNG 2258

Query: 61   RLLDQMTKTLLRKR 75
            RLLDQMTKTLLRKR
Sbjct: 2259 RLLDQMTKTLLRKR 2272

[Close]

BLAST of MS019503 vs. ExPASy TrEMBL
Match: A0A7J6HNF0 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_019785 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 9.2e-23
Identity = 62/74 (83.78%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 1   LPKQIFLPLYINAAQEKHFRLLIHRQRWLRTNSSLFNGFFDSNTSSESYQYLSNLFLSNG 60
           LPKQIFL LYINA  EK+F LLI+RQRWLRTNSSL NGFF SNT SESYQYLS LFLSNG
Sbjct: 274 LPKQIFLHLYINA--EKYFELLIYRQRWLRTNSSLSNGFFHSNTPSESYQYLSKLFLSNG 333

Query: 61  RLLDQMTKTLLRKR 75
            LLD+MTKTLLRKR
Sbjct: 334 TLLDEMTKTLLRKR 345

[Close]

BLAST of MS019503 vs. TAIR 10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 106.3 bits (264), Expect = 1.1e-23
Identity = 54/73 (73.97%), Postives = 59/73 (80.82%), Query Frame = 0


Query: 2    PKQIFLPLYINAAQEKHFRLLIHRQRWLRTNSSLFNGFFDSNTSSESYQYLSNLFLSNGR 61
            P  I+   +I   QEKHF LLI RQRWLRTNSSL NGFF SNT SESYQYLSNLF+SNG 
Sbjct: 2210 PTSIYKRWFIKNTQEKHFELLIQRQRWLRTNSSLSNGFFRSNTRSESYQYLSNLFISNGT 2269

Query: 62   LLDQMTKTLLRKR 75
            LLD+MTKTLL+KR
Sbjct: 2270 LLDRMTKTLLKKR 2282

[Close]

BLAST of MS019503 vs. TAIR 10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 106.3 bits (264), Expect = 1.1e-23
Identity = 54/73 (73.97%), Postives = 59/73 (80.82%), Query Frame = 0


Query: 2    PKQIFLPLYINAAQEKHFRLLIHRQRWLRTNSSLFNGFFDSNTSSESYQYLSNLFLSNGR 61
            P  I+   +I   QEKHF LLI RQRWLRTNSSL NGFF SNT SESYQYLSNLF+SNG 
Sbjct: 2210 PTSIYKRWFIKNTQEKHFELLIQRQRWLRTNSSLSNGFFRSNTRSESYQYLSNLFISNGT 2269

Query: 62   LLDQMTKTLLRKR 75
            LLD+MTKTLL+KR
Sbjct: 2270 LLDRMTKTLLKKR 2282

The following BLAST results are available for this feature:

BLAST of MS019503 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009669529.1	1.1e-22	81.08	Ycf2 protein [Krameria lanceolata] >YP_009669546.1 Ycf2 protein [Krameria lanceo...	[more]
YP_009669445.1	1.1e-22	81.08	Ycf2 protein [Krameria bicolor] >YP_009669462.1 Ycf2 protein [Krameria bicolor] ...	[more]
YP_009766718.1	1.5e-22	81.08	Ycf2 [Petalostylis labicheoides] >YP_009766735.1 Ycf2 [Petalostylis labicheoides...	[more]
YP_009127486.1	1.5e-22	81.08	hypothetical chloroplast RF21 [Indigofera tinctoria] >YP_009127503.1 hypothetica...	[more]
KAF4396239.1	1.9e-22	83.78	hypothetical protein F8388_019785 [Cannabis sativa]	[more]

BLAST of MS019503 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q49KT6	3.2e-25	80.82	Protein Ycf2 OS=Eucalyptus globulus subsp. globulus OX=71271 GN=ycf2-A PE=3 SV=1	[more]
B1A978	1.6e-24	79.45	Protein Ycf2 OS=Carica papaya OX=3649 GN=ycf2-A PE=3 SV=1	[more]
Q09MB4	1.6e-24	79.45	Protein Ycf2 OS=Citrus sinensis OX=2711 GN=ycf2-A PE=3 SV=1	[more]
Q9B1K6	3.6e-24	77.03	Protein Ycf2 OS=Lotus japonicus OX=34305 GN=ycf2-A PE=3 SV=1	[more]
Q14F97	8.0e-24	78.08	Protein Ycf2 OS=Populus alba OX=43335 GN=ycf2-A PE=3 SV=1	[more]

BLAST of MS019503 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4Y5PR37	5.4e-23	81.08	Protein Ycf2 OS=Krameria lanceolata OX=66689 GN=ycf2 PE=3 SV=1	[more]
A0A4Y5PR25	5.4e-23	81.08	Protein Ycf2 OS=Krameria bicolor OX=2042419 GN=ycf2 PE=3 SV=1	[more]
A0A158V0L0	7.0e-23	81.08	Protein Ycf2 OS=Indigofera tinctoria OX=198914 GN=ycf2 PE=3 SV=1	[more]
A0A6H0E618	7.0e-23	81.08	Protein Ycf2 OS=Petalostylis labicheoides OX=162878 GN=ycf2 PE=3 SV=1	[more]
A0A7J6HNF0	9.2e-23	83.78	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_019785 PE=3 SV=1	[more]

BLAST of MS019503 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00860.1	1.1e-23	73.97	Chloroplast Ycf2;ATPase, AAA type, core	[more]
ATCG01280.1	1.1e-23	73.97	Chloroplast Ycf2;ATPase, AAA type, core	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33078	PROTEIN YCF2-RELATED	coord: 11..74
None	No IPR available	PANTHER	PTHR33078:SF65	SUBFAMILY NOT NAMED	coord: 11..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS019503.1	MS019503.1	mRNA